Mcs22 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Mcs22 (Mammary carcinoma susceptibility QTL 22) Rattus norvegicus

Symbol: Mcs22
Name: Mammary carcinoma susceptibility QTL 22
RGD ID: 1600375
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor growth rate   (CMO:0000344)    
LOD Score: 3.3
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21852,539,763 - 63,933,058RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01854,108,375 - 68,819,562RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01853,346,348 - 67,970,489RGDRnor5.0
RGSC_v3.41854,856,551 - 67,024,547RGDRGSC3.4
RGSC_v3.11854,928,784 - 67,097,748RGD
Cross Type: backcross
Strains Crossed: WKY/Ztm SPRD/Ztm 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SPRD/Ztm  (IEA)
WKY/Ztm  (IEA)

References


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3057Mc4rmelanocortin 4 receptor186041983260421719Rat
3058Mc5rmelanocortin 5 receptor186191518861920229Rat
3680St8sia3ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3185775434957760839Rat
62025Rps14ribosomal protein S14185422785454232638Rat
71098Csnk1a1casein kinase 1, alpha 1185501704955050184Rat
3285Pdgfrbplatelet derived growth factor receptor beta185450000254538843Rat
69271Tcf4transcription factor 4186294173963288126Rat
71023Dctn4dynactin subunit 4185398235554009409Rat
69303Ndst1N-deacetylase and N-sulfotransferase 1185413688754199545Rat
2313Cd74CD74 molecule185425675754266003Rat
621717Txnl1thioredoxin-like 1185712536257155167Rat
628692Impa2inositol monophosphatase 2186083420660867575Rat
620928Slc6a7solute carrier family 6 member 7185444846454467319Rat
620710Ptpn2protein tyrosine phosphatase, non-receptor type 2186122901261294662Rat
620114Rab27bRAB27B, member RAS oncogene family186359755463794124Rat
620371Raxretina and anterior neural fold homeobox185946373759467431Rat
628665Sec11cSEC11 homolog C, signal peptidase complex subunit185932093259337272Rat
2425Csf1rcolony stimulating factor 1 receptor185454667354590418Rat
621740Grpgastrin releasing peptide185938867959402061Rat
628864Smim3small integral membrane protein 3185393001953982339Rat
1303077Spink7serine peptidase inhibitor, Kazal type 7185604622756049699Rat
71020Lman1lectin, mannose-binding, 1185950899659530873Rat
735047Nedd4lNEDD4 like E3 ubiquitin protein ligase185839375958726709Rat
1304867Psmg2proteasome assembly chaperone 2186120866961227671Rat
628649Mc2rmelanocortin 2 receptor186200198062015567Rat
727948Ppargc1bPPARG coactivator 1 beta185475889154861103Rat
620614Il17binterleukin 17B185514119455145565Rat
620622Slc26a2solute carrier family 26 member 2185464827654666627Rat
2060Adrb2adrenoceptor beta 2185564245955644501Rat
1306835Pde6aphosphodiesterase 6A185467686354749644Rat
1304731OacylO-acyltransferase like185921235459263722Rat
620668Synposynaptopodin185404829954106388Rat
1307238Nars1asparaginyl-tRNA synthetase 1185798930858005639Rat
2850Htr45-hydroxytryptamine receptor 4185576598155949921Rat
2261Camk2acalcium/calmodulin-dependent protein kinase II alpha185437864254441120Rat
1305259Afg3l2AFG3 like matrix AAA peptidase subunit 2186095426860999110Rat
1305106Cideacell death-inducing DFFA-like effector a186089491760920485Rat
621233Cdx1caudal type homeo box 1185447244854499799Rat
1305183Cep76centrosomal protein 76186117451461208512Rat
1305184RGD1305184similar to CDNA sequence BC023105185383842653854858Rat
2715GnalG protein subunit alpha L186062231160762599Rat
1305887Tubb6tubulin, beta 6 class V186094339460953031Rat
1311719Zfp532zinc finger protein 532185908008259203672Rat
1311505Fbxo38F-box protein 38185595695056004013Rat
1311580Afap1l1actin filament associated protein 1-like 1185518378655244174Rat
1309038Sh3tc2SH3 domain and tetratricopeptide repeats 2185541638355477419Rat
1308488Atp8b1ATPase phospholipid transporting 8B1185801638258157213Rat
1309850Tcof1treacle ribosome biogenesis factor 1185426701554300324Rat
1310109NapgNSF attachment protein gamma185643962056459159Rat
1307670Ccbe1collagen and calcium binding EGF domains 1185957985159823977Rat
1307556Fechferrochelatase185794512357978327Rat
1305892Spire1spire-type actin nucleation factor 1186104129061171670Rat
1310242Arsiarylsulfatase family, member I185436441654370995Rat
1305770Rbm22RNA binding motif protein 22185401337454024182Rat
1309195Malt1MALT1 paracaspase185894228258996318Rat
1309242RnmtRNA (guanine-7-) methyltransferase186188623061909775Rat
1307643Cplx4complexin 4185948136059504716Rat
1309184Mppe1metallophosphoesterase 1186076341860781553Rat
1564677Onecut2one cut homeobox 2185783164757881287Rat
1560471Arhgef37Rho guanine nucleotide exchange factor 37185493525655001017Rat
1560009Hmgxb3HMG-box containing 3185459055854638050Rat
1565894RGD1565894similar to ribosomal protein L31185753260857533012Rat
1564431Alpk2alpha-kinase 2185877560358906150Rat
1563290Pcyox1lprenylcysteine oxidase 1 like185515063755161334Rat
1562699RGD1562699RGD1562699185782681557831464Rat
619836Wdr7WD repeat domain 7185716548257448568Rat
1562758RGD1562758similar to glyceraldehyde-3-phosphate dehydrogenase186162698861628224Rat
1560919LOC502176hypothetical protein LOC502176185873293458770726Rat
1359266Pmaip1phorbol-12-myristate-13-acetate-induced protein 1185998618759990174Rat
1562797Cep192centrosomal protein 192186134695761458405Rat
1560819Chsy3chondroitin sulfate synthase 3185264435652901257Rat
1312005Minar2membrane integral NOTCH2 associated receptor 2185253971452554465Rat
1359421MGC108823similar to interferon-inducible GTPase185376111853770183Rat
1564795RGD1564795similar to suppression of tumorigenicity 13186027657260277769Rat
1587255LOC498874hypothetical LOC498874185816465258227747Rat
1585231Grpel2GrpE-like 2, mitochondrial185516783155180073Rat
1561424Ccdc68coiled-coil domain containing 68186354182863584122Rat
1566303RGD1566303similar to LRRGT00004186009713760098997Rat
1565797MGC105567similar to cDNA sequence BC023105185387083853890135Rat
1564477RGD1564477similar to cytoskeleton associated protein 2186381875863822861Rat
1359600Fam210afamily with sequence similarity 210, member A186184644761886123Rat
1565118Ablim3actin binding LIM protein family, member 3185525613555376629Rat
1582858Prelid3aPRELI domain containing 3A186099889861034821Rat
1582973Piezo2piezo-type mechanosensitive ion channel component 2185646844956844984Rat
1593500Chmp1bcharged multivesicular body protein 1B186074034960742879Rat
1589962Apcdd1APC down-regulated 1185638539856416065Rat
1587105Ldlrad4low density lipoprotein receptor class A domain containing 4186151925361848403Rat
1594355LOC502175similar to peroxiredoxin 1185768022257680814Rat
1594356LOC502174similar to 40S ribosomal protein S7 (S8)185759871757647400Rat
1596811LOC680077dynactin-associated protein-like186388516463909464Rat
1591057Spink13serine peptidase inhibitor Kazal type 13185606483956206257Rat
1594778Myoz3myozenin 3185402585854046505Rat
1594572LOC291547similar to 60S ribosomal protein L18185996343659964074Rat
2320365Spink10serine peptidase inhibitor, Kazal type 10185610053556111771Rat
2322794LOC100363554LUC7-like 3-like186030551760306759Rat
2322845LOC100363502cytochrome c, somatic-like186028282660284023Rat
2320730LOC100361130ribosomal protein S23-like185509504755095573Rat
2321524LOC100360734trafficking protein particle complex 6B-like185994739559948031Rat
2322702LOC10036014726S proteasome non-ATPase regulatory subunit 14-like185608967356096216Rat
2323345LOC100363296ribosomal protein L13a-like185905781659058468Rat
4888557Mir3557microRNA 3557185485853754858649Rat
2325365Mir378microRNA 378185485855954858623Rat
2325565Mir145microRNA 145185509964055099727Rat
2325566Mir143microRNA 143185510100655101110Rat
2325577Mir122microRNA 122185875870358758787Rat
4888568Mir3591microRNA 3591185875869058758798Rat
6488390LOC100912208thioredoxin-like protein 4A-like185987908759925914Rat
7500552LOC102548951uncharacterized LOC102548951185343914553494664Rat
7509835LOC102547035serine protease inhibitor Kazal-type 9-like185601533656031021Rat
7512909LOC102556293uncharacterized LOC102556293185565595755676904Rat
7515734LOC102549109uncharacterized LOC102549109185350406953767681Rat
7516836LOC102548285uncharacterized LOC102548285186380156463806104Rat
7633439LOC102552297uncharacterized LOC102552297186136366461373917Rat
7609587LOC102553013uncharacterized LOC102553013185782355957827741Rat
7616480LOC102548061uncharacterized LOC102548061186206865262155679Rat
7546100LOC102550733uncharacterized LOC102550733185433675454348014Rat
7550710Dynapdynactin associated protein186386513663868338Rat
7552381LOC102553083uncharacterized LOC102553083185825709058286296Rat
7567679LOC102551356uncharacterized LOC102551356186002982260038450Rat
7694763LOC102551836uncharacterized LOC102551836186067679260692718Rat
7719142LOC102548758uncharacterized LOC102548758185299200353016509Rat
7748007LOC102550835interferon-inducible GTPase 1-like185390703453909527Rat
7681870LOC102553438U6 snRNA-associated Sm-like protein LSm7-like186008223760093262Rat
9158344LOC103694268cytochrome b-c1 complex subunit 7 pseudogene186100109961001697Rat
9383011LOC103694235uncharacterized LOC103694235186219624362205929Rat
9366255LOC103694233thymosin beta-10 pseudogene186133109661332947Rat
11371572LOC108348797uncharacterized LOC108348797185578286455807163Rat
11465729LOC108348805uncharacterized LOC108348805185982392859852542Rat
11465878LOC108348808uncharacterized LOC108348808186249611662509136Rat
11411640LOC10834885640S ribosomal protein S25 pseudogene185903362859034270Rat
11403005LOC108348801uncharacterized LOC108348801185886018958897832Rat
11479093LOC108353173heterogeneous nuclear ribonucleoprotein A3 pseudogene186102871661033474Rat
11508213LOC108348798uncharacterized LOC108348798185624247156248072Rat
11512205LOC108348809uncharacterized LOC108348809186267937362697171Rat
11489235LOC108348800uncharacterized LOC108348800185746136957468508Rat
41321002LOC120098399small nucleolar RNA SNORA17186007453260074652Rat
41378201LOC120098163uncharacterized LOC120098163185518933055191531Rat
41138415LOC120098442U6 spliceosomal RNA185737920457379309Rat
41167261LOC120098275uncharacterized LOC120098275185412539654133520Rat
41202754LOC120098212uncharacterized LOC120098212185907224659093316Rat
41282418LOC120098155uncharacterized LOC120098155185255029452553031Rat
41204336LOC120098363small nucleolar RNA SNORA42/SNORA80 family186056304960563183Rat
41249766LOC120098239protein FAM136A-like186062292560631357Rat
41383976LOC120098209uncharacterized LOC120098209186018363660194583Rat
41170621NEWGENE_40964986transfer RNA alanine (anticodon GGC)185689805556898129Rat
41285070LOC120098190uncharacterized LOC120098190186247060262487267Rat
41142472LOC120098306uncharacterized LOC120098306185868582858687512Rat
41142733LOC12009828960S ribosomal protein L13-like185366148053667294Rat
41254053LOC120098171glyceraldehyde-3-phosphate dehydrogenase-like186045712460458562Rat
41386982LOC120098247uncharacterized LOC120098247186019638960198601Rat
41145245LOC120098180uncharacterized LOC120098180185835272558365404Rat
41389142LOC120098238interferon-inducible GTPase 1-like185378908553794279Rat
41187398LOC120098341U6 spliceosomal RNA185828961858289715Rat
41187572LOC120098441U6 spliceosomal RNA185634998356350089Rat
41187941LOC120098172tubulin alpha-1B chain-like186148541761521355Rat
41331930LOC120098240uncharacterized LOC120098240186059041860612179Rat
41391092LOC120098113uncharacterized LOC120098113185509784855118810Rat
41393772LOC120098307uncharacterized LOC120098307185869770758707320Rat
41395188LOC120098256uncharacterized LOC120098256185903613759041329Rat
41126198LOC120098227uncharacterized LOC120098227185754185757548461Rat
41372130LOC120098202uncharacterized LOC120098202185540050855401347Rat
41103344LOC120098357U1 spliceosomal RNA186104474161044905Rat
41292884LOC120098287uncharacterized LOC120098287185597921556004282Rat
41400088LOC120098151uncharacterized LOC120098151185549906955508163Rat
41107086LOC120098367small nucleolar RNA SNORA33186142409361424221Rat
41273283LOC120098308multifunctional methyltransferase subunit TRM112-like protein186182926261829727Rat
41295430LOC120098169uncharacterized LOC120098169185473616654737789Rat
41132838LOC120098259uncharacterized LOC120098259186095927460961550Rat
40996812LOC120098195uncharacterized LOC120098195185902615459032101Rat
40947909LOC120098110uncharacterized LOC120098110185454967654554826Rat
40955792LOC120098422U4 spliceosomal RNA186379633663796423Rat
40930674LOC120098374small nucleolar RNA SNORA48186052144960521579Rat
40983148LOC120098183uncharacterized LOC120098183186380773563810721Rat
40940698LOC120098414U2 spliceosomal RNA186065208560652252Rat
41314139LOC120098170glyceraldehyde-3-phosphate dehydrogenase-like186027355160273961Rat
41315866LOC120098241uncharacterized LOC120098241186063690560660960Rat
41319348LOC120098152glyceraldehyde-3-phosphate dehydrogenase-like186045510760457522Rat
41332966LOC1200984125S ribosomal RNA185765745157657572Rat
41144187LOC120098114uncharacterized LOC120098114185509639455099323Rat
41315393LOC120098225NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1-like186056202260562179Rat
41224917LOC120098242uncharacterized LOC120098242186070732560711524Rat
41035120LOC120098336uncharacterized LOC120098336185881556058817400Rat
41334865LOC120098375small nucleolar RNA SNORA48185876537658765506Rat
41017389LOC12009825260S acidic ribosomal protein P1-like185906596859068700Rat
41306054LOC120098339uncharacterized LOC120098339186083857560844484Rat
41239909LOC120098447U6 spliceosomal RNA185493098054931089Rat
41045620LOC120098182uncharacterized LOC120098182185893713558941989Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10108D18Mgh11344185564260755642948Ratregion
10647D18Wox12140186037761560377755Ratregion
10648D18Wox13171186037759060377753Ratregion
10667D18Mit17117186076313260763249Ratregion
33856D18Mit10239186040871960408944Ratregion
33884D18Mit8147185979647859796643Ratregion
34043D18Mit16150186169831761698465Ratregion
34218D18Mgh2213185971223459712417Ratregion
34256D4Mgh18124186205711662057171Ratregion
37412D18Rat40152185933040959330563Ratregion
37514D18Rat43212186357104063571267Ratregion
37548D18Rat52202185853611658536311Ratregion
37568D18Rat55100185253976352539863Ratregion
37628D18Rat41219185659458956594808Ratregion
36638D18Rat14173186393288563933058Ratregion
34975D18Rat13149186363672163636873Ratregion
39610D18Rat91124185846525358465364Ratregion
40670D18Rat87240186314087063141096Ratregion
40710D18Rat89219186072228660722497Ratregion
39000D18Rat61245185880568758805936Ratregion
42048D18Arb3360185564272855643097Ratregion
42050D18Arb5268186076305360763320Ratregion
42052D18Arb6197186037758460377792Ratregion
42054D18Arb7185186319560063195769Ratregion
41404D18Rat88125186336571863365833Ratregion
40908D18Rat90234186218573862185972Ratregion
43121D18Rat138231185909078459091013Ratregion
43151DXRat132201185505409455054132Ratregion
45534D18Got63170186392072763920897Ratregion
45536D18Got62213186090670160906914Ratregion
45537D18Wox6166186113406361134215Ratregion
45540D18Got64223186040871660408939Ratregion
45541D18Wox16152185969518459695364Ratregion
45543D18Got61114185950330559503419Ratregion
45544D18Got58179185708644357086624Ratregion
45545D18Got56110185624702156247133Ratregion
45546D18Got57270185575756855757837Ratregion
45550D18Got53184185542212755422311Ratregion
45551D18Got54197185440165254401849Ratregion
45553D18Got52184185254885052549031Ratregion
60779D18Wox5223185575768955757912Ratregion
629607D18Got60220185791018257910399Ratregion
1578845D18Chm94239185838301258383251Ratregion
1630796D18Wox25152185449832954498481Ratregion
1578887D18Chm98245185782629857826543Ratregion
1578888D18Chm37174185699620956996386Ratregion
1578944D18Chm95240185844122358441462Ratregion
1578971D18Chm38173185900596059006133Ratregion
1578988D18Chm35198185478055854780754Ratregion
1578997D18Chm100165185794171757941882Ratregion
1579026D18Chm96218185813835658138576Ratregion
1579092D18Chm34190185409583554096025Ratregion
1579127D18Chm97218185808551258085730Ratregion
1579147D18Chm36179185601732056017501Ratregion
1579151D18Chm33194185311605153116249Ratregion
1579162D18Chm99242185755651957556757Ratregion
1628675D18Got110163185595523855955399Ratregion
1629471D18Mco91038186229986662300904Ratregion
5038988RH127448205185464843254648637Ratregion
5036563AU048444185185962506259625247Ratregion
5036651AU048720142185813844658138590Ratregion
5035572MC4R478186042046060420938Ratregion
7206184Htr4121185590840455908525Ratregion
5031518AU048064184185283779552837979Ratregion
5034015RH141033181185647759156477772Ratregion
5034321AA955740185185645734556457530Ratregion
5026314RH131736191186184658561846776Ratregion
5026502RH132459181185402428954024470Ratregion
5026526RH132552208185433693654337244Ratregion
5029133RH143646131186303825563038386Ratregion
5034678BI275599172186088721860887390Ratregion
5034686BG374199221185475139654751617Ratregion
5026816RH133642183186117925261179435Ratregion
5029651BF386607150186169410661694256Ratregion
5032435AI66221592185289785152897943Ratregion
5035398AI228240201185788395057884151Ratregion
5035470BE108561160186319636663196526Ratregion
5027155RH65263127186095219660952323Ratregion
5029837BI27883398186358381063583908Ratregion
5034986Adrb2384185564299055643374Ratregion
5032825RH135441202185469787354698075Ratregion
5027531AI173486151185518394455184095Ratregion
5024950Mc2r116186200503362005149Ratregion
5025154AU015601228185638679656387024Ratregion
5030405BI288375171185457665954576946Ratregion
5030473BE106644179185646926956469448Ratregion
5030589AA955742136185788562157885757Ratregion
5033359RH138542124186184227861842402Ratregion
5028103X90945156185504742255047578Ratregion
5028199D18Mit140105185456374854563853Ratregion
5033571RH139312196185949029759490493Ratregion
5033775RH140076211185801806958018280Ratregion
5051921RH94735170185564258055642750Ratregion
5056033RH144144156185872414958724305Ratregion
5056201RH144242179185982527459825453Ratregion
5056283RH144289260185495781254958072Ratregion
5051593AW550622100186104237661042476Ratregion
5053851RH142887203186306546063065663Ratregion
5056729RH144546241185915740059157641Ratregion
5051873RH94707190186037758160377763Ratregion
5051923RH94736133185564558255645715Ratregion
5052039RH94805254186041983860420092Ratregion
5054271RH143128149185999218159992332Ratregion
5054399RH143202203185948145959481664Ratregion
5059528BI291322205185639195156392156Ratregion
5055475RH143823154185405423654054390Ratregion
5055677RH143938125185914426759144392Ratregion
5057898BI283816237185457240254572639Ratregion
5057992BF386416173185902630959027255Ratregion
5055987RH144118264185789293657893200Ratregion
5056061RH144160208185504253655042744Ratregion
5055157RH143638121186118071961181005Ratregion
5059596BE097391179186153318061533359Ratregion
5056845RH144614191186073798360738174Ratregion
5056901RH144646157185518338855183545Ratregion
5056939RH144668168185517600355176170Ratregion
5052231D18928106185950904259509148Ratregion
5052295MHAa74a6.seq150185978157559781725Ratregion
5058152BI277637192186136941361369605Ratregion
5056805RH144591153185872907158729224Ratregion
5052673RH142200181186191647961916660Ratregion
5058966BE102632152185794244357942595Ratregion
5059000BF387306170185776483057765000Ratregion
5059714BF394247162186076925160769413Ratregion
5059858BF394679123185595554455955667Ratregion
5058206BI277765161185495771854957879Ratregion
5058276BF386932172186102683761027009Ratregion
5049976RH133790205185564523355645438Ratregion
5052357X80502163185776069257760855Ratregion
5059188BF387606153186102763561027788Ratregion
5050412RH134041180186095282860953009Ratregion
5050564RH134129195185877574458775939Ratregion
5050628RH134166150185402618054026330Ratregion
5050684RH134198198185956000459560202Ratregion
7193120ADRB2888185564328855644176Ratregion
5054283RH143135141185442438254424523Ratregion
5054347RH143172110185876799858768108Ratregion
5051681RH94596146185426580754265953Ratregion
5054629RH143334237186135492761356264Ratregion
5050930RH134340192185783888757839079Ratregion
5041806RH129069180186104309161043271Ratregion
5044906RH130871208185712544957125657Ratregion
5041102RH128664200185518254155182741Ratregion
5041114RH128670218186184803261848250Ratregion
5041154RH128693218185377159153771809Ratregion
5045668RH131310199185459017854590377Ratregion
5046074RH131543204185872633158726535Ratregion
5044572RH130681182185794612857946310Ratregion
5047432RH132324189186104203161042220Ratregion
5047496RH132361220185444795954448179Ratregion
5047568RH132402197185776057257760769Ratregion
5048892RH133166219185712690657127125Ratregion
5049000RH133228180185289784952898029Ratregion
5045944RH131469220185788899157889212Ratregion
5046890RH132013219185645877056458989Ratregion
5047018RH132087214186101814061018354Ratregion
5047238RH132213212185645652856456740Ratregion
5048464RH132919187186359496763595154Ratregion
5048488RH132932181185871669158716872Ratregion
5039802RH127915180185798945257989632Ratregion
5042546RH129499208186074167060741878Ratregion
5048632RH133015191185782718557827462Ratregion
5040176RH128133182186086500360865185Ratregion
5042614RH129541191186190663061906821Ratregion
5042100RH129239216186074167060741886Ratregion
5040408RH128266215185712847457128689Ratregion
5043124RH129846165186200201162002176Ratregion
5043378RH129991195185422019454220389Ratregion
5040284RH128195198186003374260033940Ratregion
5042646RH129559215186104241061042625Ratregion
5075184RH138447142185442438154424523Ratregion
5075860RH138839149185744819157448340Ratregion
5072504RH136887199185557246255572661Ratregion
5072664RH136981206186134376361343969Ratregion
5076618RH139280166185474827254748438Ratregion
5075292RH138510123186103453861034661Ratregion
5080684RH141722193186076360260763795Ratregion
5076046RH138947148186328705963287207Ratregion
5075164RH138435123186118619161186314Ratregion
5076732RH139346139185470304954703188Ratregion
5079628RH141112209185504934555049554Ratregion
5077080RH139549182185518384055184022Ratregion
5077348RH139705202185547704955477251Ratregion
5077372RH139718191185516850155168692Ratregion
5078840RH140582195185641494356415138Ratregion
5078348RH140289206186359792863598134Ratregion
5079060RH140712131185872176658721897Ratregion
5070850RH134741171185255427752554448Ratregion
5079264RH140881199185595702855957227Ratregion
5078868RH140598199186185141161851610Ratregion
5073786RH137638135185872386258723997Ratregion
5071508RH135122206185464867254648878Ratregion
5071628RH135192186185400916054009346Ratregion
5073176RH137284184185641565956415843Ratregion
5071916RH135359183185920343759203620Ratregion
5074378RH137982168185909258259092750Ratregion
5074384RH137986170185442428354424453Ratregion
5072320RH13678184185518400055184084Ratregion
5074820RH138237122185587119455871316Ratregion
5071802RH135293205186185385761854062Ratregion
5061678BE105826162185465731554657477Ratregion
5061786AI709546149185958377359583922Ratregion
5061830AW533757197185646909556469291Ratregion
5063336BE107548194186120847761208671Ratregion
5069006AU046785103185842222058422323Ratregion
5070235RH94550172186191785461918026Ratregion
5069104AU046722136186206675362066889Ratregion
5069180AU046666226185260546552605691Ratregion
5060196BF400698145186121510561215250Ratregion
5063802AW535225203185982889859829104Ratregion
5064064BE120588214185537444455374658Ratregion
5065690BE109630150185915210759152257Ratregion
5062516BF403348180185624759556247775Ratregion
5062576BF403438165186122708561227250Ratregion
5062778AW534410169186319711063197279Ratregion
5065850AI045751205185799001757990222Ratregion
5060208BI279712166185564258055642746Ratregion
5063694BE107988177185495892054959097Ratregion
5065328BI297035163186184982161849984Ratregion
5062448BI288878199186185280561853004Ratregion
5062488BF397987160185917659759176757Ratregion
5063982BE120364151186129662761296778Ratregion
5063990BE120385219186306729163067511Ratregion
5065698BE109662152186119251561192667Ratregion
5062696BF403869151185776866857768819Ratregion
5062774AW534396150185958002359580173Ratregion
5066030BE116587150186324976163249911Ratregion
5064500BF411259132185841837358418505Ratregion
5064536BF399308248186175514961755397Ratregion
5064578BF399379130185440363454403764Ratregion
5066142BF407035116185920271259202828Ratregion
5061188BE111197178185504534755045525Ratregion
5064648BE108290159185915022759150386Ratregion
5061364BE111683181185513815355138334Ratregion
5061372BI293856160185916645059166610Ratregion
5066500AU048320195185633350456333699Ratregion
5061650BF396987221185788605657886277Ratregion
5086989BE114822155185412800954128164Ratregion
5082303BE119145177185717631257176489Ratregion
5086215BF409925151185453983154540171Ratregion
5086215BF409925151185453983154539982Ratregion
5089201AU049015245185881519758815442Ratregion
5083061BF390729164185600408456004248Ratregion
5083193BF390958192186301840463018596Ratregion
5089233AU049034179185831645358316632Ratregion
5083339BF417987147186067258460672731Ratregion
5088707AU048729123185848868558488808Ratregion
5090473AU049771289185745622657456515Ratregion
5090239AU049633183185804627958046462Ratregion
5087177AA819654197185914562759145824Ratregion
5082365BE119266151185442340554423556Ratregion
5085339BM390185210185454118654541396Ratregion
5090673AU049893216186290710462907320Ratregion
5090717AU049921182186142044361420625Ratregion
5090757AU049945191185906066759060858Ratregion
5088377AU048533125185810420358104328Ratregion
5081320RH142092193186086721960867412Ratregion
5085447BM390389172185510271455102886Ratregion
5082483BI274883209185514528055145489Ratregion
5086082BM386044212185509450955094721Ratregion
5082893BF390349156185264314552643301Ratregion
5081336Ndst1441185414128354141724Ratregion
5083117BF390803151185899664758996798Ratregion
5086685BM385927172185643998056440152Ratregion
5085910BM384410186185511487355115059Ratregion
5503296UniSTS:237838320186328689963287219Ratregion
5503784UniSTS:471069118185564299555643113Ratregion
5503908Csf1r342185456783354568481Ratregion
5504121ADRB2sts1455185564343155643886Ratregion
5504666PMC343810P598185405523954055337Ratregion
5504608PMC314306P3270186042065460420924Ratregion
5505867Htr479185588487255884951Ratregion
5506527CSF1R_1770642185458976554590407Ratregion
5507045UniSTS:224229104185259871152598815Ratregion
5507069UniSTS:224353158185413694854137106Ratregion
5507145UniSTS:224845185185400915954009344Ratregion
5500248AW455934127185444807654448203Ratregion
5500891STS-Z407940186327565363275991Ratregion
5503300UniSTS:237833200186074091960741119Ratregion
5501217PMC156124P3298186095190660952204Ratregion
5504474PMC219482P283185456689254566975Ratregion
5505144Onecut277185783248857832565Ratregion
5501373STS-X524861389185884672658848115Ratregion
5501778MARC_12115-12116:1004707389:1117185458905554589477Ratregion
5506777G452980185811342158113709Ratregion
5506777G452980185811316258113709Ratregion
5507209UniSTS:225275155185444049954440654Ratregion
Position Markers

Flank 1: (D18Rat55)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21852,539,763 - 52,539,863 (+)MAPPER
Rnor_6.01854,108,375 - 54,108,474NCBI
Rnor_5.01853,346,348 - 53,346,447UniSTS
RGSC_v3.41854,856,552 - 54,856,651UniSTS
RGSC_v3.41854,856,551 - 54,856,651RGD
RGSC_v3.11854,928,784 - 54,928,883RGD
Celera1850,643,852 - 50,643,951UniSTS
RH 3.4 Map18497.9RGD
RH 3.4 Map18497.9UniSTS
RH 2.0 Map18411.9RGD
SHRSP x BN Map1822.7899RGD
FHH x ACI Map1831.46RGD
Cytogenetic Map18q12.1UniSTS
Peak: (D18Rat14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21863,932,885 - 63,933,058 (+)MAPPER
Rnor_6.01868,819,390 - 68,819,562NCBI
Rnor_5.01867,970,317 - 67,970,489UniSTS
RGSC_v3.41867,024,128 - 67,024,547RGD
RGSC_v3.41867,024,317 - 67,024,489UniSTS
RGSC_v3.11867,097,329 - 67,097,748RGD
Celera1862,007,007 - 62,007,179UniSTS
SHRSP x BN Map1838.7499RGD
SHRSP x BN Map1838.7499UniSTS
Flank 2: (D18Rat14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21863,932,885 - 63,933,058 (+)MAPPER
Rnor_6.01868,819,390 - 68,819,562NCBI
Rnor_5.01867,970,317 - 67,970,489UniSTS
RGSC_v3.41867,024,128 - 67,024,547RGD
RGSC_v3.41867,024,317 - 67,024,489UniSTS
RGSC_v3.11867,097,329 - 67,097,748RGD
Celera1862,007,007 - 62,007,179UniSTS
SHRSP x BN Map1838.7499RGD
SHRSP x BN Map1838.7499UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185971241776477814Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)185917211583828827Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647871893566Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
631675Iddm15Insulin dependent diabetes mellitus QTL 15urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)186062231177209844Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
2312600Bp341Blood pressure QTL 3410.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185933040970263868Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)185253976369140759Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)185880568763636873Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1600375Mcs22Mammary carcinoma susceptibility QTL 223.3mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)185253976363933058Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2301969Bp324Blood pressure QTL 3244.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
61384Bp48Blood pressure QTL 4819.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186062231177209844Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)185979647883828827Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647883828827Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_general number of animals used: 187 1599317
qtl_general gender: 53-58 days old virgin females 1599317
qtl_general allele responsible: WKY allele reduces aggressiveness 1599317
qtl_general inducing agent and dosage: single dosage of DMBA, 65mg/kg 1599317