Ctdp1 (CTD phosphatase subunit 1) - Rat Genome Database

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Gene: Ctdp1 (CTD phosphatase subunit 1) Rattus norvegicus
Analyze
Symbol: Ctdp1
Name: CTD phosphatase subunit 1
RGD ID: 1311755
Description: Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity; TFIIF-class transcription factor complex binding activity; and Tat protein binding activity. Involved in negative regulation of cell growth involved in cardiac muscle cell development. Predicted to be located in microtubule cytoskeleton; midbody; and nucleoplasm. Predicted to be part of protein-containing complex. Orthologous to human CTDP1 (CTD phosphatase subunit 1); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 2,4-dinitrotoluene; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1; LOC291414; RNA polymerase II subunit A C-terminal domain phosphatase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21873,854,277 - 73,916,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1873,854,282 - 73,916,457 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1875,956,857 - 76,017,952 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01876,626,207 - 76,687,291 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01874,471,831 - 74,532,918 (-)NCBIRnor_WKY
Rnor_6.01876,922,913 - 76,985,095 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1876,922,934 - 76,984,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01871,827,648 - 71,889,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,304,752 - 77,365,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11877,378,694 - 77,439,016 (-)NCBI
Celera1872,513,356 - 72,574,466 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Updating the RNA polymerase CTD code: adding gene-specific layers. Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
11. Endothelin-1-induced cardiomyocyte hypertrophy is partly regulated by transcription factor II-F interacting C-terminal domain phosphatase of RNA polymerase II. Sakai S, etal., Life Sci. 2012 Oct 15;91(13-14):572-7. doi: 10.1016/j.lfs.2012.04.034. Epub 2012 Apr 30.
Additional References at PubMed
PMID:9765293   PMID:12721286   PMID:12732728   PMID:15723517   PMID:22692537  


Genomics

Comparative Map Data
Ctdp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21873,854,277 - 73,916,232 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1873,854,282 - 73,916,457 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1875,956,857 - 76,017,952 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01876,626,207 - 76,687,291 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01874,471,831 - 74,532,918 (-)NCBIRnor_WKY
Rnor_6.01876,922,913 - 76,985,095 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1876,922,934 - 76,984,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01871,827,648 - 71,889,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,304,752 - 77,365,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11877,378,694 - 77,439,016 (-)NCBI
Celera1872,513,356 - 72,574,466 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
CTDP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381879,676,768 - 79,756,625 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1879,679,803 - 79,754,503 (+)EnsemblGRCh38hg38GRCh38
GRCh371877,439,803 - 77,516,625 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361875,540,789 - 75,615,495 (+)NCBINCBI36Build 36hg18NCBI36
Build 341875,540,852 - 75,615,495NCBI
Celera1874,215,047 - 74,287,164 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1874,064,930 - 74,138,466 (+)NCBIHuRef
CHM1_11877,434,835 - 77,507,005 (+)NCBICHM1_1
T2T-CHM13v2.01879,953,601 - 80,031,824 (+)NCBIT2T-CHM13v2.0
Ctdp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,451,174 - 80,522,959 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,451,174 - 80,512,910 (-)EnsemblGRCm39 Ensembl
GRCm381880,407,959 - 80,478,739 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,407,959 - 80,469,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,604,698 - 80,666,406 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,570,018 - 80,631,726 (-)NCBIMGSCv36mm8
Celera1881,529,536 - 81,591,205 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.48NCBI
Ctdp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540262,817,974 - 62,914,276 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540262,817,822 - 62,914,250 (+)NCBIChiLan1.0ChiLan1.0
CTDP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11876,646,641 - 76,720,928 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1876,646,641 - 76,722,573 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01873,279,510 - 73,357,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CTDP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11886,973 - 945,994 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,020 - 946,142 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11,890,781 - 1,949,811 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01686,920 - 745,968 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1563,434 - 745,698 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11745,299 - 798,384 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01685,224 - 744,377 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01856,454 - 915,492 (-)NCBIUU_Cfam_GSD_1.0
Ctdp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494415,048,180 - 15,085,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936616369,893 - 407,093 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936616369,306 - 407,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTDP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1145,769,771 - 145,811,678 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11145,769,763 - 145,811,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21311,558,184 - 311,582,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CTDP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118479,476 - 549,546 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18478,543 - 544,258 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606025,723,426 - 25,796,410 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctdp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624806621,804 - 719,942 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624806621,087 - 720,044 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctdp1
123 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:123
Interacting mature miRNAs:152
Transcripts:ENSRNOT00000064209
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)185917211583828827Rat
2301969Bp324Blood pressure QTL 3244.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185971241776477814Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)185979647883828827Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647883828827Rat
61384Bp48Blood pressure QTL 4819.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186062231177209844Rat
631675Iddm15Insulin dependent diabetes mellitus QTL 15urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)186062231177209844Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 26 37 21 19 21 1 1 74 35 41 11 1
Low 17 20 20 20 7 10 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000089122   ⟹   ENSRNOP00000071476
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1873,854,282 - 73,916,457 (-)Ensembl
Rnor_6.0 Ensembl1876,922,934 - 76,984,203 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096477   ⟹   ENSRNOP00000083609
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1873,854,282 - 73,916,457 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106164   ⟹   ENSRNOP00000092730
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1873,854,282 - 73,886,648 (-)Ensembl
RefSeq Acc Id: NM_001106131   ⟹   NP_001099601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21873,854,282 - 73,915,392 (-)NCBI
Rnor_6.01876,922,918 - 76,983,986 (-)NCBI
Rnor_5.01871,827,648 - 71,889,829 (+)NCBI
RGSC_v3.41877,304,752 - 77,365,895 (-)RGD
Celera1872,513,356 - 72,574,466 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254942   ⟹   XP_006255004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21873,854,277 - 73,916,232 (-)NCBI
Rnor_6.01876,922,913 - 76,985,090 (-)NCBI
Rnor_5.01871,827,648 - 71,889,829 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254943   ⟹   XP_006255005
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21873,854,922 - 73,916,232 (-)NCBI
Rnor_6.01876,923,620 - 76,985,092 (-)NCBI
Rnor_5.01871,827,648 - 71,889,829 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254944   ⟹   XP_006255006
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21873,880,630 - 73,916,232 (-)NCBI
Rnor_6.01876,949,313 - 76,985,095 (-)NCBI
Rnor_5.01871,827,648 - 71,889,829 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001099601   ⟸   NM_001106131
- Sequence:
RefSeq Acc Id: XP_006255006   ⟸   XM_006254944
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006255005   ⟸   XM_006254943
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G995 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255004   ⟸   XM_006254942
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0J7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071476   ⟸   ENSRNOT00000089122
RefSeq Acc Id: ENSRNOP00000092730   ⟸   ENSRNOT00000106164
RefSeq Acc Id: ENSRNOP00000083609   ⟸   ENSRNOT00000096477
Protein Domains
BRCT   FCP1 homology   FCP1_C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K0J7-F1-model_v2 AlphaFold A0A0G2K0J7 1-1030 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311755 AgrOrtholog
BioCyc Gene G2FUF-6852 BioCyc
Ensembl Genes ENSRNOG00000061474 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000071476 ENTREZGENE
  ENSRNOP00000071476.1 UniProtKB/TrEMBL
  ENSRNOP00000083609 ENTREZGENE
  ENSRNOP00000083609.1 UniProtKB/TrEMBL
  ENSRNOP00000092730.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089122 ENTREZGENE
  ENSRNOT00000089122.2 UniProtKB/TrEMBL
  ENSRNOT00000096477 ENTREZGENE
  ENSRNOT00000096477.1 UniProtKB/TrEMBL
  ENSRNOT00000106164.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1000 UniProtKB/TrEMBL
  3.40.50.10190 UniProtKB/TrEMBL
InterPro BRCT_dom UniProtKB/TrEMBL
  BRCT_dom_sf UniProtKB/TrEMBL
  Fcp1 UniProtKB/TrEMBL
  FCP1_C UniProtKB/TrEMBL
  FCP1_euk UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  NIF UniProtKB/TrEMBL
NCBI Gene 291414 ENTREZGENE
PANTHER PTHR23081 UniProtKB/TrEMBL
Pfam FCP1_C UniProtKB/TrEMBL
  NIF UniProtKB/TrEMBL
PhenoGen Ctdp1 PhenoGen
PROSITE BRCT UniProtKB/TrEMBL
  FCP1 UniProtKB/TrEMBL
SMART BRCT UniProtKB/TrEMBL
  CPDc UniProtKB/TrEMBL
Superfamily-SCOP BRCT UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
TIGRFAMs FCP1_euk UniProtKB/TrEMBL
UniProt A0A0G2K0J7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AIS1_RAT UniProtKB/TrEMBL
  A0A8I6G995 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Ctdp1  CTD phosphatase subunit 1  Ctdp1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ctdp1  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1   Ctdp1_predicted  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ctdp1_predicted  CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED