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Gene: Ctdp1 (CTD phosphatase subunit 1) Rattus norvegicus
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Symbol: Ctdp1
Name: CTD phosphatase subunit 1
Description: Predicted to have RNA polymerase II CTD heptapeptide repeat phosphatase activity; TFIIF-class transcription factor complex binding activity; and Tat protein binding activity. Involved in negative regulation of cell growth involved in cardiac muscle cell development. Predicted to localize to several cellular components, including the microtubule cytoskeleton; midbody; and nucleoplasm. Orthologous to human CTDP1 (CTD phosphatase subunit 1); PARTICIPATES IN RNA polymerase II transcription pathway; INTERACTS WITH 2,4-dinitrotoluene; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1; LOC291414; RNA polymerase II subunit A C-terminal domain phosphatase
Orthologs:
Homo sapiens (human) : CTDP1 (CTD phosphatase subunit 1)  HGNC  Alliance
Mus musculus (house mouse) : Ctdp1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ctdp1 (CTD phosphatase subunit 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CTDP1 (CTD phosphatase subunit 1)
Canis lupus familiaris (dog) : CTDP1 (CTD phosphatase subunit 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ctdp1 (CTD phosphatase subunit 1)
Sus scrofa (pig) : CTDP1 (CTD phosphatase subunit 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01876,922,913 - 76,985,095 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1876,922,934 - 76,984,203 (-)Ensembl
Rnor_5.01871,827,648 - 71,889,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,304,752 - 77,365,895 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11877,378,694 - 77,439,016 (-)NCBI
Celera1872,513,356 - 72,574,466 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ctdp1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311755
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.