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Gene: Prdm6 (PR/SET domain 6) Rattus norvegicus
Symbol: Prdm6
Name: PR/SET domain 6
RGD ID: 1559594
Description: Predicted to have identical protein binding activity. Predicted to be involved in negative regulation of smooth muscle cell differentiation; negative regulation of transcription by RNA polymerase II; and neurogenesis. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in patent ductus arteriosus. Orthologous to human PRDM6 (PR/SET domain 6); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 7,12-dimethyltetraphene.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC307305; PR domain 6; PR domain containing 6; putative histone-lysine N-methyltransferase PRDM6; RGD1559594; similar to PR-domain zinc finger protein 6
Homo sapiens (human) : PRDM6 (PR/SET domain 6)  HGNC  Alliance
Mus musculus (house mouse) : Prdm6 (PR domain containing 6)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM6 (PR/SET domain 6)
Canis lupus familiaris (dog) : PRDM6 (PR/SET domain 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm6 (PR/SET domain 6)
Sus scrofa (pig) : PRDM6 (PR/SET domain 6)
Chlorocebus sabaeus (African green monkey) : PRDM6 (PR/SET domain 6)
Heterocephalus glaber (naked mole-rat) : Prdm6 (PR/SET domain 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.01848,433,747 - 48,538,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,434,652 - 48,538,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01847,648,048 - 47,750,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41848,948,982 - 49,053,750 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1845,086,291 - 45,189,723 (+)NCBICelera
Cytogenetic Map18q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Prdm6
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1559594
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.