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Gene: Prdm6 (PR/SET domain 6) Rattus norvegicus
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Symbol: Prdm6
Name: PR/SET domain 6
RGD ID: 1559594
Description: Predicted to have identical protein binding activity. Predicted to be involved in negative regulation of smooth muscle cell differentiation; negative regulation of transcription by RNA polymerase II; and neurogenesis. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in patent ductus arteriosus. Orthologous to human PRDM6 (PR/SET domain 6); PARTICIPATES IN histone modification pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 7,12-dimethyltetraphene.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC307305; PR domain 6; PR domain containing 6; putative histone-lysine N-methyltransferase PRDM6; RGD1559594; similar to PR-domain zinc finger protein 6
Orthologs:
Homo sapiens (human) : PRDM6 (PR/SET domain 6)  HGNC  Alliance
Mus musculus (house mouse) : Prdm6 (PR domain containing 6)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM6 (PR/SET domain 6)
Canis lupus familiaris (dog) : PRDM6 (PR/SET domain 6)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm6 (PR/SET domain 6)
Sus scrofa (pig) : PRDM6 (PR/SET domain 6)
Chlorocebus sabaeus (African green monkey) : PRDM6 (PR/SET domain 6)
Heterocephalus glaber (naked mole-rat) : Prdm6 (PR/SET domain 6)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01848,433,747 - 48,538,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1848,434,652 - 48,538,023 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01847,648,048 - 47,750,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41848,948,982 - 49,053,750 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1845,086,291 - 45,189,723 (+)NCBICelera
Cytogenetic Map18q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prdm6
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1559594
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.