Spire1 (spire-type actin nucleation factor 1) - Rat Genome Database

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Gene: Spire1 (spire-type actin nucleation factor 1) Rattus norvegicus
Analyze
Symbol: Spire1
Name: spire-type actin nucleation factor 1
RGD ID: 1305892
Description: Predicted to enable actin binding activity. Predicted to be involved in several processes, including cytoskeleton organization; cytoskeleton-dependent cytokinesis; and positive regulation of mitochondrial fission. Predicted to act upstream of or within behavioral fear response and dendritic spine development. Predicted to be located in several cellular components, including Golgi apparatus; mitochondrial outer membrane; and nucleoplasm. Predicted to be active in cell cortex and cytoplasmic vesicle membrane. Predicted to colocalize with cleavage furrow. Orthologous to human SPIRE1 (spire type actin nucleation factor 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307348; spire homolog 1; spire homolog 1 (Drosophila)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81863,311,800 - 63,441,545 (-)NCBIGRCr8
mRatBN7.21861,041,914 - 61,171,670 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1861,041,290 - 61,171,899 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1863,111,702 - 63,241,976 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01863,810,453 - 63,940,728 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01861,662,447 - 61,790,483 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01863,226,557 - 63,357,420 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1863,226,557 - 63,357,298 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01862,411,829 - 62,542,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41864,017,521 - 64,148,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11864,092,433 - 64,221,561 (-)NCBI
Celera1859,147,554 - 59,277,678 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11747823   PMID:21620703   PMID:21983562   PMID:24345451   PMID:26287480   PMID:26305500   PMID:29434191  


Genomics

Comparative Map Data
Spire1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81863,311,800 - 63,441,545 (-)NCBIGRCr8
mRatBN7.21861,041,914 - 61,171,670 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1861,041,290 - 61,171,899 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1863,111,702 - 63,241,976 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01863,810,453 - 63,940,728 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01861,662,447 - 61,790,483 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01863,226,557 - 63,357,420 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1863,226,557 - 63,357,298 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01862,411,829 - 62,542,377 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41864,017,521 - 64,148,448 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11864,092,433 - 64,221,561 (-)NCBI
Celera1859,147,554 - 59,277,678 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
SPIRE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381812,446,512 - 12,662,091 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1812,446,512 - 12,658,107 (-)EnsemblGRCh38hg38GRCh38
GRCh371812,446,511 - 12,662,090 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361812,436,511 - 12,647,912 (-)NCBINCBI36Build 36hg18NCBI36
Celera1812,327,387 - 12,540,805 (-)NCBICelera
Cytogenetic Map18p11.21NCBI
HuRef1812,400,079 - 12,611,281 (-)NCBIHuRef
CHM1_11812,445,876 - 12,657,284 (-)NCBICHM1_1
T2T-CHM13v2.01812,609,480 - 12,825,076 (-)NCBIT2T-CHM13v2.0
Spire1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391867,621,279 - 67,745,880 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1867,621,279 - 67,743,860 (-)EnsemblGRCm39 Ensembl
GRCm381867,488,209 - 67,612,810 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1867,488,209 - 67,610,790 (-)EnsemblGRCm38mm10GRCm38
MGSCv371867,647,863 - 67,712,375 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361867,613,578 - 67,678,090 (-)NCBIMGSCv36mm8
Celera1868,771,101 - 68,835,669 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1839.99NCBI
Spire1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955402920,308 - 1,011,332 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955402920,730 - 1,011,339 (+)NCBIChiLan1.0ChiLan1.0
SPIRE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21725,383,793 - 25,599,056 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11811,076,386 - 11,291,651 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0181,663,614 - 1,881,357 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11816,800,870 - 16,992,959 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1816,800,870 - 16,992,959 (+)Ensemblpanpan1.1panPan2
SPIRE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1777,860,287 - 78,062,894 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl777,854,875 - 78,092,466 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha777,261,005 - 77,465,420 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0777,919,016 - 78,123,607 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl777,913,596 - 78,123,521 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1777,615,867 - 77,820,318 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0777,663,291 - 77,868,120 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0777,949,784 - 78,154,319 (-)NCBIUU_Cfam_GSD_1.0
Spire1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049442,923,674 - 3,063,993 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366262,151,827 - 2,227,374 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366262,151,990 - 2,292,307 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPIRE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl696,934,227 - 97,114,587 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1696,934,023 - 97,114,591 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2690,558,260 - 90,614,719 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPIRE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11870,995,611 - 71,178,844 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1870,995,390 - 71,178,538 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605046,022,752 - 46,213,708 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spire1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477019,653,848 - 19,745,067 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477019,652,842 - 19,756,581 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spire1
451 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:790
Count of miRNA genes:311
Interacting mature miRNAs:402
Transcripts:ENSRNOT00000066103
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
1600375Mcs22Mammary carcinoma susceptibility QTL 223.3mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)185253976363933058Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)185253976369140759Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
631834Sach3Saccharin preference QTL 33.90.01consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)185880568763636873Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)185917211583828827Rat
2312600Bp341Blood pressure QTL 3410.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185933040970263868Rat
2301969Bp324Blood pressure QTL 3244.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185971241776477814Rat
1331770Bp234Blood pressure QTL 2343.807arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647871893566Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)185979647883828827Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647883828827Rat
61384Bp48Blood pressure QTL 4819.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186062231177209844Rat
631675Iddm15Insulin dependent diabetes mellitus QTL 15urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)186062231177209844Rat

Markers in Region
D18Wox6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21861,134,063 - 61,134,215 (+)MAPPERmRatBN7.2
Rnor_6.01863,319,678 - 63,319,829NCBIRnor6.0
Rnor_5.01862,504,950 - 62,505,101UniSTSRnor5.0
RGSC_v3.41864,110,311 - 64,110,463RGDRGSC3.4
RGSC_v3.41864,110,312 - 64,110,463UniSTSRGSC3.4
RGSC_v3.11864,183,513 - 64,183,664RGD
Celera1859,240,306 - 59,240,471UniSTS
RH 3.4 Map18620.0UniSTS
RH 3.4 Map18620.0RGD
RH 2.0 Map18298.6RGD
Cytogenetic Map18q12.1UniSTS
RH129069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21861,043,091 - 61,043,271 (+)MAPPERmRatBN7.2
Rnor_6.01863,228,358 - 63,228,537NCBIRnor6.0
Rnor_5.01862,413,630 - 62,413,809UniSTSRnor5.0
RGSC_v3.41864,019,322 - 64,019,501UniSTSRGSC3.4
Celera1859,149,355 - 59,149,534UniSTS
RH 3.4 Map18617.1UniSTS
Cytogenetic Map18q12.1UniSTS
RH129559  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21861,042,410 - 61,042,625 (+)MAPPERmRatBN7.2
Rnor_6.01863,227,677 - 63,227,891NCBIRnor6.0
Rnor_5.01862,412,949 - 62,413,163UniSTSRnor5.0
RGSC_v3.41864,018,641 - 64,018,855UniSTSRGSC3.4
Celera1859,148,674 - 59,148,888UniSTS
RH 3.4 Map18617.6UniSTS
Cytogenetic Map18q12.1UniSTS
RH132324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21861,042,031 - 61,042,220 (+)MAPPERmRatBN7.2
Rnor_6.01863,227,298 - 63,227,486NCBIRnor6.0
Rnor_5.01862,412,570 - 62,412,758UniSTSRnor5.0
RGSC_v3.41864,018,262 - 64,018,450UniSTSRGSC3.4
Celera1859,148,295 - 59,148,483UniSTS
RH 3.4 Map18618.1UniSTS
Cytogenetic Map18q12.1UniSTS
AW550622  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21861,042,376 - 61,042,476 (+)MAPPERmRatBN7.2
Rnor_6.01863,227,643 - 63,227,742NCBIRnor6.0
Rnor_5.01862,412,915 - 62,413,014UniSTSRnor5.0
RGSC_v3.41864,018,607 - 64,018,706UniSTSRGSC3.4
Celera1859,148,640 - 59,148,739UniSTS
Cytogenetic Map18q12.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 16 8 8 74 35 39 11
Low 3 43 40 32 19 32 8 11 2 8
Below cutoff 1 1 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000066103   ⟹   ENSRNOP00000062729
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1861,041,290 - 61,171,538 (-)Ensembl
Rnor_6.0 Ensembl1863,226,557 - 63,357,298 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089408   ⟹   ENSRNOP00000071145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1861,041,290 - 61,171,899 (-)Ensembl
Rnor_6.0 Ensembl1863,229,500 - 63,357,194 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108704   ⟹   ENSRNOP00000097454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1861,041,290 - 61,171,899 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112905   ⟹   ENSRNOP00000096614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1861,041,290 - 61,171,538 (-)Ensembl
RefSeq Acc Id: NM_001415681   ⟹   NP_001402610
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,441,534 (-)NCBI
mRatBN7.21861,041,914 - 61,171,654 (-)NCBI
RefSeq Acc Id: NM_001415682   ⟹   NP_001402611
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,441,534 (-)NCBI
mRatBN7.21861,041,914 - 61,171,654 (-)NCBI
RefSeq Acc Id: NM_001415684   ⟹   NP_001402613
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,441,534 (-)NCBI
mRatBN7.21861,041,914 - 61,171,654 (-)NCBI
RefSeq Acc Id: XM_006254860   ⟹   XP_006254922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,441,545 (-)NCBI
mRatBN7.21861,041,914 - 61,171,670 (-)NCBI
Rnor_6.01863,228,270 - 63,357,420 (-)NCBI
Rnor_5.01862,411,829 - 62,542,377 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600946   ⟹   XP_017456435
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,441,545 (-)NCBI
mRatBN7.21861,041,914 - 61,171,670 (-)NCBI
Rnor_6.01863,228,270 - 63,357,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096794   ⟹   XP_038952722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,405,115 (-)NCBI
mRatBN7.21861,041,914 - 61,135,203 (-)NCBI
RefSeq Acc Id: XM_063277313   ⟹   XP_063133383
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,414,912 (-)NCBI
RefSeq Acc Id: XM_063277314   ⟹   XP_063133384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81863,311,800 - 63,386,267 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_006254922   ⟸   XM_006254860
- Peptide Label: isoform X1
- UniProtKB: A6IXV4 (UniProtKB/TrEMBL),   D3ZEX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456435   ⟸   XM_017600946
- Peptide Label: isoform X2
- UniProtKB: A6IXV4 (UniProtKB/TrEMBL),   D3ZEX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071145   ⟸   ENSRNOT00000089408
RefSeq Acc Id: ENSRNOP00000062729   ⟸   ENSRNOT00000066103
RefSeq Acc Id: XP_038952722   ⟸   XM_039096794
- Peptide Label: isoform X3
- UniProtKB: A6IXV4 (UniProtKB/TrEMBL),   D3ZEX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000097454   ⟸   ENSRNOT00000108704
RefSeq Acc Id: ENSRNOP00000096614   ⟸   ENSRNOT00000112905
RefSeq Acc Id: NP_001402613   ⟸   NM_001415684
- Peptide Label: isoform 3
- UniProtKB: A6IXV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402610   ⟸   NM_001415681
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JZR0 (UniProtKB/TrEMBL),   A6IXV4 (UniProtKB/TrEMBL),   D3ZEX7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001402611   ⟸   NM_001415682
- Peptide Label: isoform 2
- UniProtKB: A0A8I6B5T2 (UniProtKB/TrEMBL),   A6IXV3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133383   ⟸   XM_063277313
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063133384   ⟸   XM_063277314
- Peptide Label: isoform X5
Protein Domains
KIND

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEX7-F1-model_v2 AlphaFold D3ZEX7 1-749 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700849
Promoter ID:EPDNEW_R11369
Type:initiation region
Name:Spire1_1
Description:spire-type actin nucleation factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01863,357,277 - 63,357,337EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305892 AgrOrtholog
BioCyc Gene G2FUF-7137 BioCyc
Ensembl Genes ENSRNOG00000025324 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066103.3 UniProtKB/TrEMBL
  ENSRNOT00000089408 ENTREZGENE
  ENSRNOT00000089408.2 UniProtKB/TrEMBL
  ENSRNOT00000108704 ENTREZGENE
  ENSRNOT00000108704.1 UniProtKB/TrEMBL
  ENSRNOT00000112905.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro KIND UniProtKB/TrEMBL
  Spire UniProtKB/TrEMBL
  Spire1 UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
KEGG Report rno:307348 UniProtKB/TrEMBL
NCBI Gene 307348 ENTREZGENE
PANTHER PTHR21345 UniProtKB/TrEMBL
  PTHR21345:SF8 UniProtKB/TrEMBL
Pfam KIND UniProtKB/TrEMBL
PhenoGen Spire1 PhenoGen
PROSITE KIND UniProtKB/TrEMBL
RatGTEx ENSRNOG00000025324 RatGTEx
SMART KIND UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
UniProt A0A0G2JZR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM47_RAT UniProtKB/TrEMBL
  A0A8I6B5T2 ENTREZGENE, UniProtKB/TrEMBL
  A6IXV3 ENTREZGENE, UniProtKB/TrEMBL
  A6IXV4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEX7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-17 Spire1  spire-type actin nucleation factor 1  Spire1  spire homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Spire1  spire homolog 1 (Drosophila)   Spire1_predicted  spire homolog 1 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Spire1_predicted  spire homolog 1 (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED