Scl22 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scl22 (Serum cholesterol level QTL 22) Rattus norvegicus

Symbol: Scl22
Name: Serum cholesterol level QTL 22
RGD ID: 631264
Previously known as: Total cholesterol QTL 1
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: 6.2
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21811,941,791 - 31,393,320RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01815,532,963 - 32,704,022RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01815,307,563 - 32,348,480RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41812,406,571 - 32,459,145RGDRGSC3.4
RGSC_v3.11812,433,216 - 32,494,411RGD
Cross Type: intercross
Strains Crossed: BB/OK SHR/Mol 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BB/OK  (IEA)
SHR/Mol  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Novel quantitative trait loci for blood pressure and related traits on rat chromosomes 1, 10, and 18. Kovacs P, etal., Biochem Biophys Res Commun 1997 Jun 18;235(2):343-8

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3916Ttrtransthyretin181194179111951008Rat
71046B4galt6beta-1,4-galactosyltransferase 6181195838212015247Rat
7733249LOC102551486uncharacterized LOC102551486181201461012021819Rat
6502448Ipo5-ps1importin 5, pseudogene 1181203772312039781Rat
41193066LOC120098272uncharacterized LOC120098272181208142912093465Rat
1309102Trappc8trafficking protein particle complex subunit 8181210387412180422Rat
1560045Vom2r52l1vomeronasal 2 receptor, 52 like 1181219476712207125Rat
1592104Eef2-ps4eukaryotic translation elongation factor 2, pseudogene 4181223437412236924Rat
1306757Rnf125ring finger protein 125181225406612275719Rat
621485Rnf138ring finger protein 138181229155712315931Rat
3081Mep1bmeprin A subunit beta181236612612392840Rat
1591842Garem1GRB2 associated regulator of MAPK1 subtype 1181242016912585323Rat
41250271LOC120098265uncharacterized LOC120098265181249349512509604Rat
41219354LOC120098431U6 spliceosomal RNA181268326212683364Rat
1566178Klhl14kelch-like family member 14181280425312917828Rat
75277674930426D05RiklRIKEN cDNA 4930426D05 gene like181291489212918657Rat
1308160Ccdc178coiled-coil domain containing 178181307483413472732Rat
1305869Asxl3ASXL transcriptional regulator 3181359352913766324Rat
1310663Nol4nucleolar protein 4181393249914294873Rat
40980709LOC120098415U2 spliceosomal RNA181402922314029406Rat
41015557LOC120098257uncharacterized LOC120098257181414626814153430Rat
2324800Cyb5a-ps1cytochrome b5 type A, pseudogene 1181417912214179563Rat
41401461LOC120098396small nucleolar RNA SNORA17181439743314397563Rat
1561985Dtnadystrobrevin, alpha181468719314944232Rat
41061447LOC120098123uncharacterized LOC120098123181483976214857935Rat
40940132LOC120098122uncharacterized LOC120098122181494893914969988Rat
1563861Rpl10-ps14ribosomal protein L10, pseudogene 14181500387215004638Rat
1590736Mapre2microtubule-associated protein, RP/EB family, member 2181502867515169553Rat
41129914LOC120098207uncharacterized LOC120098207181506484215071132Rat
6504280Zfp397zinc finger protein 397181524176415253148Rat
1306095Zscan30zinc finger and SCAN domain containing 30181524514015266204Rat
1312031Zfp35zinc finger protein 35181526885215284334Rat
7699321Pnrc1-ps1proline-rich nuclear receptor coactivator 1. pseudogene 1181529034315294509Rat
727963Zfp24zinc finger protein 24181529568715307319Rat
1310199Ino80cINO80 complex subunit C181537876415398574Rat
620358Galnt1polypeptide N-acetylgalactosaminyltransferase 1181548901515568849Rat
41350816LOC120098426U6 spliceosomal RNA181551852015518626Rat
1559877Rpl29l2ribosomal protein L29 like 2181567143015672027Rat
2325557Mir187microRNA 187181573119415731297Rat
1564673C18h18orf21similar to human chromosome 18 open reading frame 21181577934915786772Rat
1307374Rprd1aregulation of nuclear pre-mRNA domain containing 1A181579141815839338Rat
7678926Rpl32-ps6ribosomal protein L32, pseudogene 6181583163315832047Rat
41307046LOC120098423U6 spliceosomal RNA181585287215852978Rat
1304664Slc39a6solute carrier family 39 member 6181586487415885417Rat
1306419Elp2elongator acetyltransferase complex subunit 2181588594015921564Rat
1308496Mocosmolybdenum cofactor sulfurase181593165915977415Rat
2322319Fhod3formin homology 2 domain containing 3181599307916425796Rat
41369412LOC120098112uncharacterized LOC120098112181607964916090990Rat
1592105Hsc70-ps2heat shock cognate protein 70, pseudogene 2181621046716212736Rat
1310571Tpgs2tubulin polyglutamylase complex subunit 2181643262816489604Rat
1562608Kiaa1328KIAA1328 homolog181648856916776373Rat
1307630Celf4CUGBP, Elav-like family member 4181678657817065045Rat
41149760LOC120098197uncharacterized LOC120098197181707994717092021Rat
9208196LOC103694180uncharacterized LOC103694180181728731017298283Rat
41230128LOC120098439U6 spliceosomal RNA181741828017418367Rat
40942616LOC120098383small nucleolar RNA SNORA17181782146517821596Rat
1591344Spata45-ps1spermatogenesis associated 45, pseudogene 1181812548518125863Rat
7687052LOC102547510uncharacterized LOC102547510181858231618799213Rat
41273281LOC120098419U4 spliceosomal RNA181890879318908908Rat
2321885Rps15-ps18ribosomal protein S15, pseudogene 18181936632419368584Rat
41109350LOC120098395small nucleolar RNA SNORA17181982761519827741Rat
9301181LOC10369417539S ribosomal protein L30, mitochondrial pseudogene182003614220041958Rat
41327931LOC120098443U1 spliceosomal RNA182011027520110438Rat
7641502LOC102546350uncharacterized LOC102546350182011147320130786Rat
41113362LOC120098262uncharacterized LOC120098262182023826120243346Rat
1589056Tsen34-ps1tRNA splicing endonuclease subunit 34, pseudogene 1182047688320478138Rat
41165265Rps29-ps13ribosomal protein S29, pseudogene 13182098242820982760Rat
1591671Vdac1-ps10voltage-dependent anion channel 1, pseudogene 10182108469821085621Rat
7695838LOC102546844uncharacterized LOC102546844182109663621105059Rat
7648889LOC102546931uncharacterized LOC102546931182119168421291797Rat
40990016LOC120098141uncharacterized LOC120098141182147176321570788Rat
1564026Ldha-ps30lactate dehydrogenase A, pseudogene 30182173890921739826Rat
620899Pik3c3phosphatidylinositol 3-kinase, catalytic subunit type 3182184528221934387Rat
41315285LOC120098402small nucleolar RNA SNORA17182205448422054597Rat
41198857LOC120098153uncharacterized LOC120098153182206823022110779Rat
1588518Hspa8-ps19heat shock protein family A (Hsp70) member 8, pseudogene 19182244294622444872Rat
9433650LOC103694950uncharacterized LOC103694950182245930122466852Rat
1307654Rit2Ras-like without CAAX 2182256540322921648Rat
41122946Rpl18-ps3ribosomal protein L18, pseudogene 3182280094422801850Rat
41061823LOC120098263uncharacterized LOC120098263182286871922879737Rat
41003880LOC120098253uncharacterized LOC120098253182294782022955187Rat
68397Syt4synaptotagmin 4182303697323046380Rat
41065389LOC120098376small nucleolar RNA SNORA17182307170523071836Rat
1586633Actb-ps5actin, beta, pseudogene 5182312917123129806Rat
1586622Rpl35l1ribosomal protein L35 like 1182315940123159843Rat
1305072Slc25a46solute carrier family 25, member 46182321595423244917Rat
1311657Sap130Sin3A associated protein 130182324433723345368Rat
1307915Ammecr1lAMMECR1 like182338611423411177Rat
6499927LOC100910201uncharacterized LOC100910201182340323323417959Rat
1308565Polr2dRNA polymerase II subunit D182341809723425228Rat
1309230Wdr33WD repeat domain 33182343223323535460Rat
41115189LOC120098364small nucleolar RNA SNORA21182347861323478747Rat
1561764Sft2d3SFT2 domain containing 3182353710523539305Rat
1305273Lims2LIM zinc finger domain containing 2182355393723592137Rat
1589785Gpr17G protein-coupled receptor 17182357623223583153Rat
1561153Myo7bmyosin VIIb182358830723669841Rat
1584390PotefPOTE ankyrin domain family, member F182362651823629132Rat
1304762Iws1interacts with SUPT6H, CTD assembly factor 1182369549623737363Rat
3411Procprotein C, inactivator of coagulation factors Va and VIIIa182376436723774816Rat
620967Map3k2mitogen activated protein kinase kinase kinase 2182380721823879722Rat
1307139Ercc3ERCC excision repair 3, TFIIH core complex helicase subunit182388361323914326Rat
621786Bin1bridging integrator 1182400973124067267Rat
7590894Tex51testis expressed 51182409301524097223Rat
40943294LOC120098229uncharacterized LOC120098229182409705724101106Rat
1310295Gypcglycophorin C182416073824193408Rat
40972159LOC120098297uncharacterized LOC120098297182419345424207788Rat
41059240LOC120098296uncharacterized LOC120098296182420836324212249Rat
41136700LOC120098387small nucleolar RNA SNORA17182423632524236450Rat
1564290Rps27a-ps12ribosomal protein S27a, pseudogene 12182424283624243530Rat
41101543LOC120098381small nucleolar RNA SNORA17182425045024250580Rat
41078696LOC120098181uncharacterized LOC120098181182426174624265324Rat
41015119LOC120098349small nucleolar RNA SNORA62/SNORA6 family182432317024323325Rat
40955952Trnaa-agc30transfer RNA alanine (anticodon AGC) 30182436171824361789Rat
1586479Tslpthymic stromal lymphopoietin182444740924454244Rat
1586463Wdr36WD repeat domain 36182447365724501773Rat
2264Camk4calcium/calmodulin-dependent protein kinase IV182458298824811918Rat
41283036LOC120098266uncharacterized LOC120098266182473052024765008Rat
41217121LOC120098432U6 spliceosomal RNA182477719624777302Rat
1309475Stard4StAR-related lipid transfer domain containing 4182481468324830024Rat
631411Nrepneuronal regeneration related protein182501706925046593Rat
7565214LOC102549443uncharacterized LOC102549443182505782525070704Rat
41148153LOC120098267uncharacterized LOC120098267182514858725165025Rat
40956852LOC120098268uncharacterized LOC120098268182516595525169703Rat
41105457LOC120098438U6 spliceosomal RNA182525852925258634Rat
6495224Srsf3-ps5serine and arginine rich splicing factor 3, pseudogene 5182527432525274813Rat
40989749LOC120098416U2 spliceosomal RNA182535315825353328Rat
41202102LOC120098269uncharacterized LOC120098269182540307925405115Rat
41093685LOC120098360small nucleolar RNA SNORA13182540445225404585Rat
1306034Epb41l4aerythrocyte membrane protein band 4.1 like 4A182540546125615392Rat
41336072LOC120098343U7 small nuclear RNA182563899525639057Rat
40943959LOC12009830960S ribosomal protein L23a-like182565633325656683Rat
41014578LOC120098385small nucleolar RNA SNORA17182570042225700556Rat
41173243LOC120098345U7 small nuclear RNA182579781525797876Rat
9353936LOC103694952uncharacterized LOC103694952182580088325819754Rat
2123ApcAPC regulator of WNT signaling pathway182582855825925511Rat
7613549LOC102549857uncharacterized LOC102549857182587653325878164Rat
1308437Srp19signal recognition particle 19182593173425937974Rat
1306047Reep5receptor accessory protein 5182594537525983271Rat
7637519Srp19-ps2signal recognition particle 19, pseudogene 2182595080025951722Rat
1310272Pkd2l2polycystin 2 like 2, transient receptor potential cation channel182600778926042428Rat
9264054Set-ps8Set nuclear proto-oncogene, pseudogene 8182602222726024458Rat
1310484Fam13bfamily with sequence similarity 13, member B182604028526107112Rat
1306312Wnt8aWnt family member 8A182613769026143283Rat
1583004Nme5NME/NM23 family member 5182616355826180742Rat
1307003Brd8bromodomain containing 8182620489226229999Rat
1307695Kif20akinesin family member 20A182623029426238780Rat
1304819Cdc23cell division cycle 23182623689126260611Rat
620502Gfra3GDNF family receptor alpha 3182629782826326105Rat
1311875Cdc25ccell division cycle 25C182633515626356199Rat
2323347Slbplstem-loop binding protein like182635647826363577Rat
41208786LOC120098428U6 spliceosomal RNA182635916126359267Rat
11451504LOC108348765uncharacterized LOC108348765182636357126366910Rat
1593851Fam53cfamily with sequence similarity 53, member C182636405026378173Rat
1583423Kdm3blysine demethylase 3B182638085926436701Rat
1586980Reep2receptor accessory protein 2182643813026447165Rat
2544Egr1early growth response 1182646296726466766Rat
41083422LOC1200983405S ribosomal RNA182647851126478629Rat
1305712Etf1eukaryotic translation termination factor 1182650241326530753Rat
41139103LOC120098404small nucleolar RNA SNORA26182650802726508142Rat
1311806Hspa9heat shock protein family A (Hsp70) member 9182653613126554294Rat
41184218LOC120098355small nucleolar RNA SNORD63182654013726540204Rat
41307513LOC120098354small nucleolar RNA SNORD63182654146926541541Rat
41150603LOC120098310mucin-6-like182657999326594636Rat
11514929LOC108353164uncharacterized LOC108353164182670856326728317Rat
1359485Ctnna1catenin alpha 1182672824626860911Rat
40929473LOC120098430U6 spliceosomal RNA182673841626738522Rat
41166828Trnap-agg77transfer RNA proline (anticodon AGG) 77182675270626752780Rat
1593785Lrrtm2leucine rich repeat transmembrane neuronal 2182681781626822864Rat
735103Sil1SIL1 nucleotide exchange factor182687242327104365Rat
41054661LOC120098407small nucleolar RNA U13182691710726917200Rat
7650468LOC102550858uncharacterized LOC102550858182710449427110858Rat
41199427LOC120098220uncharacterized LOC120098220182713097927140288Rat
3052Matr3matrin 3182715409827193212Rat
4888598Mir1949microRNA 1949182715559527155691Rat
40940619Snora74asmall nucleolar RNA, H/ACA box 74A182715776527157961Rat
5130376Snhg4small nucleolar RNA host gene 4 (non-protein coding)182715843327158669Rat
1359176Paip2poly(A) binding protein interacting protein 2182719976227218359Rat
619875Slc23a1solute carrier family 23 member 1182721494027230564Rat
1310251Mzb1marginal zone B and B1 cell-specific protein182723899927241060Rat
1594845Prob1proline-rich basic protein 1182724251127247355Rat
1311742Spata24spermatogenesis associated 24182724904727257129Rat
1310237Dnajc18DnaJ heat shock protein family (Hsp40) member C18182726935027303453Rat
1594804Ecscrendothelial cell surface expressed chemotaxis and apoptosis regulator182730971127319106Rat
41099412Smim33small integral membrane protein 33182732530227327193Rat
1562552Sting1stimulator of interferon response cGAMP interactor 1182733211927338371Rat
41070320LOC120098144uncharacterized LOC120098144182733943827349050Rat
1591897Ube2d2ubiquitin-conjugating enzyme E2D 2182736432527406322Rat
40996649LOC120098406U6atac minor spliceosomal RNA182739233927392461Rat
1359466Cxxc5CXXC finger protein 5182742759127458579Rat
1564574Rps16-ps2ribosomal protein S16, pseudogene 2182748383127500578Rat
9272642LOC103694193NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene182754707827548571Rat
7591891LOC102551758uncharacterized LOC102551758182755724427560273Rat
1311075Psd2pleckstrin and Sec7 domain containing 2182756491227616674Rat
1303302Nrg2neuregulin 2182761654227798505Rat
41334145LOC120098187uncharacterized LOC120098187182779871627865414Rat
1308543Purapurine rich element binding protein A182788507127905509Rat
2323374IgipIgA-inducing protein182790401827905509Rat
2323233Cystm1cysteine-rich transmembrane module containing 1182794586228013509Rat
1305603Pfdn1prefoldin subunit 1182801414528067148Rat
2526Hbegfheparin-binding EGF-like growth factor182810628428116167Rat
628811Slc4a9solute carrier family 4 member 9182812874028144554Rat
4892133Ankhd1ankyrin repeat and KH domain containing 1182816188228260917Rat
2324556Eif4ebp3eukaryotic translation initiation factor 4E binding protein 3182826308928268033Rat
621148Sra1steroid receptor RNA activator 1182826919228273023Rat
620853Apbb3amyloid beta precursor protein binding family B member 3182827316828280347Rat
628792Slc35a4solute carrier family 35, member A4182828048328284610Rat
41186981LOC120098313SLC35A4 upstream open reading frame protein-like182828059228282477Rat
1565779E230025N22RiklRiken cDNA E230025N22 gene like182828598028295204Rat
1590895Blvrb-ps1biliverdin reductase B, pseudogene 1182831033928315448Rat
1563066Rpl17-ps9ribosomal protein L17, pseudogene 9182833082028332264Rat
620588Cd14CD14 molecule182833552228337383Rat
1309263Tmco6transmembrane and coiled-coil domains 6182834924828355843Rat
1309997Ndufa2NADH:ubiquinone oxidoreductase subunit A2182835577428357863Rat
1359352IkIK cytokine182835800428372809Rat
1305640Wdr55WD repeat domain 55182837536628378834Rat
1583648Dnd1DND microRNA-mediated repression inhibitor 1182837869228381316Rat
1310695Hars1histidyl-tRNA synthetase 1182838164928398699Rat
41048330LOC120098350small nucleolar RNA SNORA72182839098328391114Rat
1308426Hars2histidyl-tRNA synthetase 2, mitochondrial182839879028408075Rat
1583592Zmat2zinc finger, matrin type 2182840960628414241Rat
6487485Zfp260-ps1zinc finger protein 260, pseudogene 1182851639128519872Rat
620337Pcdha4protocadherin alpha 4182858104028846214Rat
41298473LOC120098411U2 spliceosomal RNA182860983728609969Rat
41284742LOC120098166protocadherin alpha-8-like182862606028818723Rat
41150048Pcdhac1protocadherin alpha subfamily C, 1182874035328750216Rat
41085620LOC120098168uncharacterized LOC120098168182880800628820392Rat
41288194LOC120098314ATP synthase F(0) complex subunit C1, mitochondrial-like182885858528862055Rat
1308760Pcdhb1protocadherin beta 1182891383528916746Rat
1563132Pcdhb2protocadherin beta 2182900599629008782Rat
1305171Pcdhb3protocadherin beta 3182901166729014221Rat
1308912Pcdhb4protocadherin beta 4182901828229020821Rat
1304665Pcdhb5protocadherin beta 5182902431529032183Rat
1306123Pcdhb6protocadherin beta 6182904638329049745Rat
1309422Pcdhb7protocadherin beta 7182905504429058488Rat
1309895Pcdhb8protocadherin beta 8182906546629067805Rat
1596855Aldoa-ps4aldolase, fructose-bisphosphate A, pseudogene 4182909563629097081Rat
1596840Pcdhb9protocadherin beta 9182910529829108468Rat
1308364Pcdhb10protocadherin beta 10182911360229123201Rat
1309608Pcdhb11protocadherin beta 11182912644529130193Rat
2322275Mrpl15-ps1mitochondrial ribosomal protein L15, pseudogene 1182913743729139285Rat
3266Pcdhb12protocadherin beta 12182913974629142764Rat
11376545Pcdhb6lprotocadherin beta-6-like182914601729149871Rat
1307591Pcdhb14protocadherin beta 14182915787729160683Rat
11368541Pcdhb15protocadherin beta 15182917886929183847Rat
11492646Pcdhb16protocadherin beta 16182919226029195669Rat
1549775Pcdhb17protocadherin beta 17182919685829201822Rat
1549697Pcdhb19protocadherin beta 19182920483829207646Rat
41352637LOC120098359small nucleolar RNA SNORA31182920948229209583Rat
1594228Pcdhb20protocadherin beta 20182921187829215272Rat
1305349Pcdhb21protocadherin beta 21182921820929221142Rat
1310328Pcdhb22protocadherin beta 22182922302829229132Rat
1588517Ftl1-ps3ferritin light chain 1, pseudogene 3182944979629450237Rat
1310667Slc25a2solute carrier family 25 member 2182945294329456324Rat
1309935Taf7TATA-box binding protein associated factor 7182945993729462086Rat
1563159Zfp605l1zinc finger protein 605 like 1182948047429481239Rat
1590761Pcdhga1protocadherin gamma subfamily A, 1182948740429667865Rat
1587259Pcdhga2protocadherin gamma subfamily A, 2182949395429667865Rat
1598664Pcdhga3protocadherin gamma subfamily A, 3182949914829667865Rat
1560482Pcdhgb1protocadherin gamma subfamily B, 1182950173929508024Rat
620725Pcdhga4protocadherin gamma subfamily A, 4182950815229543103Rat
1311949Pcdhga5protocadherin gamma subfamily A, 5182951970529667865Rat
9133771LOC103694196uncharacterized LOC103694196182952837729551871Rat
41180547LOC120098403small nucleolar RNA SNORA40182953461329534733Rat
1305108Pcdhga7protocadherin gamma subfamily A, 7182954301829667865Rat
1310676Pcdhga8protocadherin gamma subfamily A, 8182955388229667865Rat
620729Pcdhga9protocadherin gamma subfamily A, 9182956461429667865Rat
1308289Pcdhga10protocadherin gamma subfamily A, 10182957469329667865Rat
1588516Pcdhgb7protocadherin gamma subfamily B, 7182957912929667868Rat
621232Pcdhga11protocadherin gamma subfamily A, 11182958337329667865Rat
1307432Pcdhgb8protocadherin gamma subfamily B, 8182958832729667865Rat
1587258Pcdhga12protocadherin gamma subfamily A, 12182959266429667865Rat
620746Pcdhgc3protocadherin gamma subfamily C, 3182963301629667865Rat
2312582Pcdhgc5protocadherin gamma subfamily C, 5182964720129666336Rat
1310707Diaph1diaphanous-related formin 1182966965929769070Rat
40926502LOC120098325uncharacterized LOC120098325182971035129729530Rat
619977Hdac3histone deacetylase 3182977063729789850Rat
1305276Rell2RELT-like 2182978999629793986Rat
1308240Fchsd1FCH and double SH3 domains 1182979389929804533Rat
1304938Arap3ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3182980621429834217Rat
11369277LOC108348772uncharacterized LOC108348772182998329130000247Rat
1308490Pcdh1protocadherin 1183001169230039679Rat
735029Dele1DAP3 binding cell death enhancer 1183008509330098105Rat
619917Pcdh12protocadherin 12183010372830119307Rat
1589576Rnf14ring finger protein 14183013162730155686Rat
40969390LOC120098448U6 spliceosomal RNA183013293230133034Rat
1585624Gnpda1glucosamine-6-phosphate deaminase 1183016543530177462Rat
41320469LOC120098124uncharacterized LOC120098124183024868730258445Rat
1310053Ndfip1Nedd4 family interacting protein 1183026580830316068Rat
41236582Rpl34-ps10ribosomal protein L34, pseudogene 10183028140630281757Rat
41302367LOC120098127uncharacterized LOC120098127183035758630383465Rat
1305324Spry4sprouty RTK signaling antagonist 4183043651330451426Rat
2605Fgf1fibroblast growth factor 1183068655530772667Rat
41167718LOC120098315uncharacterized LOC120098315183074279630779070Rat
1310923Arhgap26Rho GTPase activating protein 26183083580631237945Rat
41328206Cox7c-ps2Cytochrome c oxidase subunit 7C, pseudogene 2183094480030944969Rat
41402961LOC120098335uncharacterized LOC120098335183108878631096355Rat
6493059LOC100911367uncharacterized LOC100911367183123627731252492Rat
2741Nr3c1nuclear receptor subfamily 3, group C, member 1183127168131393320Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10287D18Wox14148182458653424586682Ratregion
10689D18Mit5110183135940831359530Ratregion
33949D18Mit1496181527559715275693Ratregion
33971D18Mit7204181287462012874824Ratregion
34059D18Mit2108181495133714951437Ratregion
34296D3Mgh24116181499676814996831Ratregion
34550D18Mgh9136182479697724797117Ratregion
11461D18Mit1245181194429911944544Ratregion
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33577D18Mit1583182730725627307341Ratregion
33606D18Mit397181963384219633937Ratregion
33766D18Mit4125182653319226533309Ratregion
37524D18Rat63245182754179827542049Ratregion
35491D18Rat22125183041899130419110Ratregion
35495D18Rat35175182802602128026196Ratregion
35521D18Rat29158181352979513529957Ratregion
37020D18Rat37158181730060017300786Ratregion
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37910D18Rat71128183007625430076376Ratregion
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36548D18Rat27147181800745218007599Ratregion
35020D18Rat36321182768042127680742Ratregion
35803D18Rat25154182004704220047196Ratregion
35815D18Rat23294182612480326125080Ratregion
39682D18Rat106114181367431613674433Ratregion
38350D18Rat38188182206624222066430Ratregion
38366D18Rat59202182805046428050665Ratregion
40592D18Rat132248182473227124732519Ratregion
40622D18Rat47238181704648017046730Ratregion
38632D18Rat72200181746092317461137Ratregion
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39230D18Rat70207181704755117047766Ratregion
39294D18Rat51163183024674330246916Ratregion
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39550D18Rat100211182960700129607214Ratregion
41520D18Rat104163182206618822066351Ratregion
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40842D18Rat101209182654808226548295Ratregion
40926D18Rat105243181690511016905341Ratregion
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41572D18Rat103162181953929719539463Ratregion
43111D18Rat148149181490800314908139Ratregion
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1578822D18Chm42158183086264630862802Ratregion
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5036265Dtna212181494394314944155Ratregion
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5028035MHAa67b10.seq172183115487531155047Ratregion
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5506159Lrrtm2637182682102826821665Ratregion
5501802MARC_13470-13471:1002300368:2125181538505915386080Ratregion
5502114MARC_4701-4702:996679619:1324182827598428276704Ratregion
5502259AA959952246182826942628269672Ratregion
5502263C76941205181203785612038058Ratregion
5502383RH124673314182966971029670024Ratregion
5502735GALNT1129181556240615563364Ratregion
5502750ALDOA246182909663929096885Ratregion
5502413RH124760215181195075711950972Ratregion
Position Markers

Flank 1: (Ttr)
Rat AssemblyChrPosition (strand)Source
GRCr81812,216,684 - 12,225,972 (+)NCBI
mRatBN7.21811,941,791 - 11,951,008 (+)NCBI
mRatBN7.2 Ensembl1811,943,789 - 11,951,008 (+)Ensembl
UTH_Rnor_SHR_Utx1812,139,290 - 12,146,732 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01812,926,943 - 12,934,381 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01812,198,580 - 12,206,019 (+)NCBI
Rnor_6.01815,532,963 - 15,542,180 (-)NCBI
Rnor_6.0 Ensembl1815,532,963 - 15,540,177 (-)Ensembl
Rnor_5.01815,307,563 - 15,316,780 (-)NCBI
RGSC_v3.41812,406,571 - 12,413,680 (+)NCBI
RGSC_v3.11812,433,216 - 12,440,326 (+)NCBI
Celera1811,951,406 - 11,958,617 (+)NCBI
RH 3.4 Map1891.82RGD
Cytogenetic Map18p12NCBI
Peak: (Ttr)
Rat AssemblyChrPosition (strand)Source
GRCr81812,216,684 - 12,225,972 (+)NCBI
mRatBN7.21811,941,791 - 11,951,008 (+)NCBI
mRatBN7.2 Ensembl1811,943,789 - 11,951,008 (+)Ensembl
UTH_Rnor_SHR_Utx1812,139,290 - 12,146,732 (+)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01812,926,943 - 12,934,381 (+)NCBI
UTH_Rnor_WKY_Bbb_1.01812,198,580 - 12,206,019 (+)NCBI
Rnor_6.01815,532,963 - 15,542,180 (-)NCBI
Rnor_6.0 Ensembl1815,532,963 - 15,540,177 (-)Ensembl
Rnor_5.01815,307,563 - 15,316,780 (-)NCBI
RGSC_v3.41812,406,571 - 12,413,680 (+)NCBI
RGSC_v3.11812,433,216 - 12,440,326 (+)NCBI
Celera1811,951,406 - 11,958,617 (+)NCBI
RH 3.4 Map1891.82RGD
Cytogenetic Map18p12NCBI
Flank 2: (Nr3c1)
Rat AssemblyChrPosition (strand)Source
GRCr81831,522,783 - 31,644,508 (-)NCBI
mRatBN7.21831,271,681 - 31,393,320 (-)NCBI
mRatBN7.2 Ensembl1831,271,681 - 31,393,375 (-)Ensembl
UTH_Rnor_SHR_Utx1831,375,854 - 31,463,901 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.01832,142,851 - 32,230,932 (-)NCBI
UTH_Rnor_WKY_Bbb_1.01831,471,103 - 31,559,156 (-)NCBI
Rnor_6.01831,728,373 - 32,704,022 (-)NCBI
Rnor_6.0 Ensembl1831,728,373 - 31,749,647 (-)Ensembl
Rnor_5.01832,347,227 - 32,348,480 (-)NCBI
Rnor_5.01831,408,742 - 31,442,725 (-)NCBI
RGSC_v3.41832,371,496 - 32,459,145 (-)NCBI
RGSC_v3.11832,406,765 - 32,494,411 (-)NCBI
Celera1830,905,394 - 30,993,522 (-)NCBI
RH 3.4 Map18442.9RGD
Cytogenetic Map18p11NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
70178EaezExperimental allergic encephalomyelitis QTL z2.4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)181235778612874620Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl22


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Scl22  Serum cholesterol level QTL 22  Tc1  Total cholesterol QTL 1  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general associates with the increased level of total serum cholesterol