E230025N22Rikl (Riken cDNA E230025N22 gene like) - Rat Genome Database

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Gene: E230025N22Rikl (Riken cDNA E230025N22 gene like) Rattus norvegicus
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Symbol: E230025N22Rikl
Name: Riken cDNA E230025N22 gene like
RGD ID: 1565779
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC502155; RGD1565779; similar to hypothetical protein E230025N22; uncharacterized protein LOC502155; uncharacterized protein RGD1565779
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81828,560,015 - 28,569,702 (-)NCBIGRCr8
mRatBN7.21828,285,980 - 28,295,204 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,286,051 - 28,294,639 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,413,124 - 28,422,348 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01829,175,215 - 29,184,439 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01828,510,453 - 28,519,677 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01829,510,685 - 29,520,459 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01829,215,617 - 29,225,399 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,323,338 - 29,332,153 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1828,013,165 - 28,023,208 (-)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in E230025N22Rikl
23 total Variants

1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat

1 to 10 of 33 rows






Ensembl Acc Id: ENSRNOT00000108010   ⟹   ENSRNOP00000085189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,286,051 - 28,294,639 (-)Ensembl
RefSeq Acc Id: NM_001402538   ⟹   NP_001389467
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,560,016 - 28,569,240 (-)NCBI
mRatBN7.21828,285,980 - 28,295,204 (-)NCBI
RefSeq Acc Id: XM_063277517   ⟹   XP_063133587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,560,015 - 28,569,702 (-)NCBI
RefSeq Acc Id: XM_063277518   ⟹   XP_063133588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81828,563,644 - 28,569,702 (-)NCBI
Protein RefSeqs NP_001389467 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133587 (Get FASTA)   NCBI Sequence Viewer  
  XP_063133588 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085189.1
Ensembl Acc Id: ENSRNOP00000085189   ⟸   ENSRNOT00000108010
RefSeq Acc Id: NP_001389467   ⟸   NM_001402538
- UniProtKB: A0A8I6A2R0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133587   ⟸   XM_063277517
- Peptide Label: isoform X1
- UniProtKB: A6J326 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133588   ⟸   XM_063277518
- Peptide Label: isoform X2


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 14 of 14 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-7867 BioCyc
Ensembl Genes ENSRNOG00000066557 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000108010.1 UniProtKB/TrEMBL
Gene3D-CATH Kinesin motor domain UniProtKB/TrEMBL
InterPro Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 502155 ENTREZGENE
PANTHER RIKEN CDNA E230025N22 GENE UniProtKB/TrEMBL
  RIKEN CDNA E230025N22 GENE UniProtKB/TrEMBL
PhenoGen E230025N22Rikl PhenoGen
RatGTEx ENSRNOG00000066557 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6A2R0 ENTREZGENE, UniProtKB/TrEMBL
  A6J326 ENTREZGENE, UniProtKB/TrEMBL
1 to 14 of 14 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 E230025N22Rikl  Riken cDNA E230025N22 gene like  RGD1565779  similar to hypothetical protein E230025N22  Symbol and Name Changed 1299863 APPROVED
2022-06-02 RGD1565779  similar to hypothetical protein E230025N22  RGD1565779  similar to hypothetical protein E230025N22  Data merged from RGD:149736417 737654 PROVISIONAL
2021-08-09 RGD1565779  similar to hypothetical protein E230025N22      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-04-30 RGD1565779  similar to hypothetical protein E230025N22   RGD1565779_predicted  similar to hypothetical protein E230025N22 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565779_predicted  similar to hypothetical protein E230025N22 (predicted)  LOC502155  similar to hypothetical protein E230025N22  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC502155  similar to hypothetical protein E230025N22      Symbol and Name status set to provisional 70820 PROVISIONAL