Colcr3 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Colcr3 (Colorectal carcinoma resistance QTL 3) Rattus norvegicus

Symbol: Colcr3
Name: Colorectal carcinoma resistance QTL 3
RGD ID: 1641910
Previously known as: rat Colorectal carcinoma resistance 3; rCcr3
Trait: intestine integrity trait   (VT:0010554)    
Measurement Type: poorly differentiated malignant colorectal tumor surface area measurement   (CMO:0002078)    
LOD Score: 5.02
P Value: 7.0E-6
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2182,249,477 - 22,066,430RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0182,477,096 - 23,184,414RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0182,495,834 - 22,914,913RGDRnor5.0
RGSC_v3.4182,571,631 - 22,807,391RGDRGSC3.4
RGSC_v3.1182,571,631 - 22,834,037RGD
Cross Type: intercross
Strains Crossed: ACI/SegHsd WF/CrCrli 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Apc is a candidate Gene for Colcr3

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
WF/CrCrli  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Identification and chromosome mapping of loci predisposing to colorectal cancer that control Wnt/{beta}-catenin pathway and progression of early lesions in the rat. De Miglio MR, etal., Carcinogenesis. 2007 May 17;.
2. Most lung and colon cancer susceptibility genes are pair-wise linked in mice, humans and rats. Quan L, etal., PLoS One. 2011 Feb 24;6(2):e14727.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3916Ttrtransthyretin181194179111951008Rat
71046B4galt6beta-1,4-galactosyltransferase 6181195838212015247Rat
69280Cdh2cadherin 21877767047990934Rat
620899Pik3c3phosphatidylinositol 3-kinase, catalytic subunit type 3182184528221934387Rat
621566Kctd1potassium channel tetramerization domain containing 11861223906316434Rat
3081Mep1bmeprin A subunit beta181236612612392840Rat
628693Npc1NPC intracellular cholesterol transporter 11833794823425100Rat
628888Osbpl1aoxysterol binding protein-like 1A1839040064094635Rat
727963Zfp24zinc finger protein 24181529568715307319Rat
621485Rnf138ring finger protein 138181229155712315931Rat
628776Lama3laminin subunit alpha 31835231683751722Rat
620358Galnt1polypeptide N-acetylgalactosaminyltransferase 1181548901515568849Rat
1304664Slc39a6solute carrier family 39 member 6181586487415885417Rat
2143Aqp4aquaporin 41865079036524558Rat
620631Hrh4histamine receptor H41841662704182426Rat
1307345Zfp521zinc finger protein 5211847759525068592Rat
1306419Elp2elongator acetyltransferase complex subunit 2181588594015921564Rat
1307374Rprd1aregulation of nuclear pre-mRNA domain containing 1A181579141815839338Rat
1305869Asxl3ASXL transcriptional regulator 3181359352913766324Rat
1306095Zscan30zinc finger and SCAN domain containing 30181524514015266204Rat
1306757Rnf125ring finger protein 125181225406612275719Rat
1310199Ino80cINO80 complex subunit C181537876415398574Rat
1310833Riok3RIO kinase 31833277763353350Rat
1311143Dsg2desmoglein 2181184620711904630Rat
1311782Dsc3desmocollin 3181137975911413797Rat
1310768Dsc1desmocollin 1181149993611556801Rat
1312031Zfp35zinc finger protein 35181526885215284334Rat
1311659Psma8proteasome 20S subunit alpha 81858635945928226Rat
1309426Dsc2desmocollin 2181145039211482476Rat
1309925Dsg1desmoglein 1181167468711705383Rat
1307630Celf4CUGBP, Elav-like family member 4181678657817065045Rat
1308160Ccdc178coiled-coil domain containing 178181307483413472732Rat
1309102Trappc8trafficking protein particle complex subunit 8181210387412180422Rat
735015Dsg4desmoglein 4181172084411757927Rat
1307302Chst9carbohydrate sulfotransferase 91865763916851078Rat
1308872Rbbp8RB binding protein 8, endonuclease1829229852988851Rat
1310663Nol4nucleolar protein 4181393249914294873Rat
1310571Tpgs2tubulin polyglutamylase complex subunit 2181643262816489604Rat
1308496Mocosmolybdenum cofactor sulfurase181593165915977415Rat
1305516Cables1Cdk5 and Abl enzyme substrate 11830765563181181Rat
1559877Rpl29l2ribosomal protein L29 like 2181567143015672027Rat
1562608Kiaa1328KIAA1328 homolog181648856916776373Rat
1564673C18h18orf21similar to human chromosome 18 open reading frame 21181577934915786772Rat
1311919Ss18SS18 subunit of BAF chromatin remodeling complex1857730425835696Rat
1562997Taf4bTATA-box binding protein associated factor 4b1859527376086408Rat
1560045Vom2r52l1vomeronasal 2 receptor, 52 like 1181219476712207125Rat
1564026Ldha-ps30lactate dehydrogenase A, pseudogene 30182173890921739826Rat
1311805Rmc1regulator of MON1-CCZ11833598483379764Rat
1587260Ankrd29ankyrin repeat domain 291834363013494292Rat
1561985Dtnadystrobrevin, alpha181468719314944232Rat
1561788Rrs1-ps8ribosome biogenesis regulator 1 homolog, pseudogene 8181066424110665367Rat
1563861Rpl10-ps14ribosomal protein L10, pseudogene 14181500387215004638Rat
1583536Rpl6-ps3ribosomal protein L6, pseudogene 31894849369514865Rat
1566178Klhl14kelch-like family member 14181280425312917828Rat
1592101Eef1g-ps2eukaryotic translation elongation factor 1 gamma, pseudogene 2181143704511438463Rat
1592102Lap3-ps1leucine aminopeptidase 3, pseudogene 1181158152811582618Rat
1592103Dsg3desmoglein 3181179935511830988Rat
1588520Phb1-ps12prohibitin 1, pseudogene 121869698746971761Rat
1588182Mrps18b-ps1mitochondrial ribosomal protein S18B, pseudogene 11858418135845074Rat
1591344Spata45-ps1spermatogenesis associated 45, pseudogene 1181812548518125863Rat
1585423Ttc39ctetratricopeptide repeat domain 39C1837688023887932Rat
1589056Tsen34-ps1tRNA splicing endonuclease subunit 34, pseudogene 1182047688320478138Rat
1585413Cabyrcalcium binding tyrosine phosphorylation regulated1838920623904391Rat
1590602Tmem241transmembrane protein 2411831680723318340Rat
1590736Mapre2microtubule-associated protein, RP/EB family, member 2181502867515169553Rat
1592104Eef2-ps4eukaryotic translation elongation factor 2, pseudogene 4181223437412236924Rat
1592105Hsc70-ps2heat shock cognate protein 70, pseudogene 2181621046716212736Rat
1591671Vdac1-ps10voltage-dependent anion channel 1, pseudogene 10182108469821085621Rat
1595554Peds1-ps1plasmanylethanolamine desaturase 1, pseudogene 1181020945410281082Rat
1591977Impactimpact RWD domain protein1841088724147571Rat
1596770Rpl3-ps1ribosomal protein L3, pseudogene 1181160765011608894Rat
1596759Api5-ps1apoptosis inhibitor 5, pseudogene 1181163625111642861Rat
1591842Garem1GRB2 associated regulator of MAPK1 subtype 1181242016912585323Rat
1598047Dmtf1l1cyclin D binding myb-like transcription factor 1 like 1181122702911229258Rat
2320691Aktip-ps1AKT interacting protein, pseudogene 11834249533428838Rat
2322319Fhod3formin homology 2 domain containing 3181599307916425796Rat
2321885Rps15-ps18ribosomal protein S15, pseudogene 18181936632419368584Rat
2324544Tuba1b-ps14tubulin, alpha 1B, pseudogene 14181178767211788464Rat
2325557Mir187microRNA 187181573119415731297Rat
2324800Cyb5a-ps1cytochrome b5 type A, pseudogene 1181417912214179563Rat
6502448Ipo5-ps1importin 5, pseudogene 1181203772312039781Rat
6504280Zfp397zinc finger protein 397181524176415253148Rat
75277674930426D05RiklRIKEN cDNA 4930426D05 gene like181291489212918657Rat
7533724LOC102555022uncharacterized LOC1025550221826299132636062Rat
7516452LOC102546723uncharacterized LOC1025467231840318414035774Rat
7648889LOC102546931uncharacterized LOC102546931182119168421291797Rat
7641502LOC102546350uncharacterized LOC102546350182011147320130786Rat
7598702LOC102553404uncharacterized LOC102553404181100116211019181Rat
7583405LOC102551724uncharacterized LOC1025517241863652616447354Rat
7566111Slc25a19-ps1solute carrier family 25 member 19, pseudogene 11831059303106927Rat
7695838LOC102546844uncharacterized LOC102546844182109663621105059Rat
7683954LOC102547190uncharacterized LOC1025471901843634984372177Rat
7687052LOC102547510uncharacterized LOC102547510181858231618799213Rat
7690490LOC102549314uncharacterized LOC1025493141848541894859291Rat
7733249LOC102551486uncharacterized LOC102551486181201461012021819Rat
7670702LOC102551809uncharacterized LOC102551809181192270811928930Rat
7699321Pnrc1-ps1proline-rich nuclear receptor coactivator 1. pseudogene 1181529034315294509Rat
7678926Rpl32-ps6ribosomal protein L32, pseudogene 6181583163315832047Rat
9188764LOC10369417060S ribosomal protein L27a pseudogene1872017497202240Rat
9208196LOC103694180uncharacterized LOC103694180181728731017298283Rat
9258222Rpl39-ps10ribosomal protein L39, pseudogene 101863263166326691Rat
9301181LOC10369417539S ribosomal protein L30, mitochondrial pseudogene182003614220041958Rat
11469925LOC108348747uncharacterized LOC1083487471854288945441470Rat
11474431LOC108348866non-histone chromosomal protein HMG-17 pseudogene1840436384047054Rat
11436391LOC10834884640S ribosomal protein S10 pseudogene1822676782268175Rat
11431944LOC108348751uncharacterized LOC1083487511868532376865278Rat
11461088LOC108348847uncharacterized LOC1083488471854212635428777Rat
11419083LOC108348752uncharacterized LOC1083487521870559367070705Rat
11389422LOC108348750uncharacterized LOC1083487501864867606506611Rat
11391260LOC108348753uncharacterized LOC1083487531889629389079803Rat
41113362LOC120098262uncharacterized LOC120098262182023826120243346Rat
41168946LOC120098418small nucleolar RNA U3181113045211130556Rat
41250271LOC120098265uncharacterized LOC120098265181249349512509604Rat
41327931LOC120098443U1 spliceosomal RNA182011027520110438Rat
41149760LOC120098197uncharacterized LOC120098197181707994717092021Rat
41212325LOC120098434U6 spliceosomal RNA1875149757515080Rat
41154066LOC120098206uncharacterized LOC1200982061855116915553876Rat
41193066LOC120098272uncharacterized LOC120098272181208142912093465Rat
41369178LOC120098221uncharacterized LOC1200982211881283678132815Rat
41369412LOC120098112uncharacterized LOC120098112181607964916090990Rat
41396114LOC120098231uncharacterized LOC1200982311845977334615485Rat
41217115LOC120098243uncharacterized LOC1200982431854853595495255Rat
41397459LOC120098389small nucleolar RNA SNORA171869943926994528Rat
41219354LOC120098431U6 spliceosomal RNA181268326212683364Rat
41129914LOC120098207uncharacterized LOC120098207181506484215071132Rat
41271556LOC120098382small nucleolar RNA SNORA171882652818265410Rat
41350816LOC120098426U6 spliceosomal RNA181551852015518626Rat
41401461LOC120098396small nucleolar RNA SNORA17181439743314397563Rat
41230128LOC120098439U6 spliceosomal RNA181741828017418367Rat
41273281LOC120098419U4 spliceosomal RNA181890879318908908Rat
41165265Rps29-ps13ribosomal protein S29, pseudogene 13182098242820982760Rat
41295872LOC120098331uncharacterized LOC1200983311836930753768701Rat
41320385LOC120098332uncharacterized LOC1200983321836578833661456Rat
41109350LOC120098395small nucleolar RNA SNORA17181982761519827741Rat
40972921Trnas-aga31transfer RNA serine (anticodon AGA) 311883872238387304Rat
41015557LOC120098257uncharacterized LOC120098257181414626814153430Rat
40980709LOC120098415U2 spliceosomal RNA181402922314029406Rat
40933636LOC120098248uncharacterized LOC1200982481854582705462819Rat
40960381LOC120098160uncharacterized LOC1200981601832077933220103Rat
40990016LOC120098141uncharacterized LOC120098141182147176321570788Rat
40940132LOC120098122uncharacterized LOC120098122181494893914969988Rat
40942616LOC120098383small nucleolar RNA SNORA17181782146517821596Rat
41338301LOC120098413U2 spliceosomal RNA1837495233749672Rat
41151483LOC120098391small nucleolar RNA SNORA171832925623292696Rat
41315285LOC120098402small nucleolar RNA SNORA17182205448422054597Rat
41033437LOC120098417small nucleolar RNA U31896485019648587Rat
41061447LOC120098123uncharacterized LOC120098123181483976214857935Rat
41301905LOC120098397small nucleolar RNA SNORA171861091936109323Rat
41334317Osbpl1aloxysterol binding protein-like 1A like1840117054016669Rat
41307046LOC120098423U6 spliceosomal RNA181585287215852978Rat
41311100LOC120098425U6 spliceosomal RNA1824972622497368Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
33949D18Mit1496181527559715275693Ratregion
33971D18Mit7204181287462012874824Ratregion
34059D18Mit2108181495133714951437Ratregion
34296D3Mgh24116181499676814996831Ratregion
11461D18Mit1245181194429911944544Ratregion
11462D18Wox7200181194427311944420Ratregion
33606D18Mit397181963384219633937Ratregion
36129D18Rat301361855845375584636Ratregion
37466D3Rat1051331822691082269241Ratregion
37480D18Rat481481857040065704152Ratregion
37578D18Rat65195181179151811791709Ratregion
35366D18Rat28158181136754511367701Ratregion
35511D18Rat311281851858585185979Ratregion
35521D18Rat29158181352979513529957Ratregion
37020D18Rat37158181730060017300786Ratregion
37128D18Rat1332131832065053206708Ratregion
36548D18Rat27147181800745218007599Ratregion
35803D18Rat25154182004704220047196Ratregion
39682D18Rat106114181367431613674433Ratregion
39726D18Rat1112491832580043258245Ratregion
39888D18Rat1172271825180512518278Ratregion
38010D18Rat462291822494772249700Ratregion
38350D18Rat38188182206624222066430Ratregion
40622D18Rat47238181704648017046730Ratregion
38430D18Rat622251867912516791521Ratregion
38632D18Rat72200181746092317461137Ratregion
38708D18Rat642881850968125097100Ratregion
40076D18Rat107150181141823611418394Ratregion
40096D18Rat102168181927890119279072Ratregion
39230D18Rat70207181704755117047766Ratregion
39582D18Rat1092121842079414208141Ratregion
41520D18Rat104163182206618822066351Ratregion
42420D18Rat1522101872660117266214Ratregion
42421D18Rat146223181303474413034959Ratregion
40914D18Rat1102251829157092915900Ratregion
40926D18Rat105243181690511016905341Ratregion
40926D18Rat105243181690511016905393Ratregion
41572D18Rat103162181953929719539463Ratregion
43108D18Rat1531301867701256770253Ratregion
43109D18Rat1342041862228396223031Ratregion
43111D18Rat148149181490800314908139Ratregion
43112D18Rat147236181171900111719218Ratregion
45573D18Got22256181981598519816241Ratregion
45575D18Got1894181615410316154197Ratregion
45578D18Got17167181420046514200632Ratregion
45579D18Got14286181287464412874930Ratregion
45580D18Got13192181091246810912660Ratregion
45581D18Got15281181224271212242990Ratregion
45582D18Got112031898795779879780Ratregion
45584D18Got101281884879928488120Ratregion
45585D18Got122861887803238780609Ratregion
45588D18Got91231873635257363648Ratregion
45589D18Got81371869533626953458Ratregion
45589D18Got81371869533626953499Ratregion
45590D18Got21471857198725720023Ratregion
45591D18Got41551852340045234159Ratregion
45592D18Got841551832607053260860Ratregion
45593D18Got51531862920606292213Ratregion
60774D18Wox193181235769312357786Ratregion
60164D18Got19165181546396915464134Ratregion
625821D18Got61761879390027939178Ratregion
625832D18Got21229181945092419451153Ratregion
62460D18Uia3192181781924617819444Ratregion
66569D18Mco12051832872483287445Ratregion
67278D18Arb1375181194285711943232Ratregion
1578823D18Chm88172181150186711502035Ratregion
1578828D18Chm161701881649728165134Ratregion
1578830D18Chm25152182128448521284637Ratregion
1578864D18Chm89242181260885612609094Ratregion
1631641D18Wox241551877768877777044Ratregion
1578884D18Chm19210181208366712083877Ratregion
1578885D18Chm6195181593401015934209Ratregion
1578889D18Chm222081833057023305910Ratregion
1578945D18Chm87199181125670711256906Ratregion
1578949D18Chm91219181220506612205285Ratregion
1578955D18Chm841511878661207866271Ratregion
1578969D18Chm122211851524535152676Ratregion
1578999D18Chm862081895400719540275Ratregion
1579008D18Chm282411898796209879861Ratregion
1579014D18Chm8164181812599118126155Ratregion
1579017D18Chm142191861354476135669Ratregion
1579032D18Chm90219181271057612710797Ratregion
1579043D18Chm272361887925558792791Ratregion
1579080D18Chm11176182142618621426364Ratregion
1579086D18Chm152201873155907315814Ratregion
1579101D18Chm132251856636695663898Ratregion
1579110D18Chm23208181860604318606255Ratregion
1579112D18Chm851771891195989119775Ratregion
1579116D18Chm24174181975214919752325Ratregion
1579120D18Chm29240181179611611796356Ratregion
1579134D18Chm321341834834283483562Ratregion
1579142D18Chm7201181675893416759137Ratregion
1579160D18Chm93237181194890611949143Ratregion
1579175D18Chm18184181081036610810552Ratregion
1628499D18Got1131091896692829669386Ratregion
1635302D18Got1082131860993706099583Ratregion
1633713D18Wox23181195891011959165Ratregion
7205952Aqp42311865204996520730Ratregion
5038728BB384708101181393280413932905Ratregion
5036265Dtna212181494394314944155Ratregion
5036265Dtna212181494394314944336Ratregion
5039284RH1276182141857731705773384Ratregion
5026066RH1307751951877776187777813Ratregion
5031644AU0476241261883394828339605Ratregion
5029009RH143169110181190448411904594Ratregion
5031744AU047296199181245421012454409Ratregion
5026454RH132277197181579165015791847Ratregion
5034556BF416056223181460026814600491Ratregion
5026692RH133170187181538045415380641Ratregion
5029237RH144036135182004072020040855Ratregion
5032151RH94561100181239270512392805Ratregion
5026806RH1336032041862245146224718Ratregion
5032563WI-14403148181242390512424053Ratregion
5035180AW526511164181558197515582139Ratregion
5032871RH136793243181556766415567907Ratregion
5032875RH136808130181190446511904595Ratregion
5027705D12S16120181827525018275416Ratregion
5028023MDB1448163181678666016786824Ratregion
5030679BI301716173181550036715500540Ratregion
5025722RH129406186181196184611962032Ratregion
5028318D10S1559125181185518011855305Ratregion
5028318D10S1559125181185518011855305Ratregion
5051907RH947271431865114516511594Ratregion
5051927RH94739101181195088311950985Ratregion
5055097RH1436042091829409282941137Ratregion
5056257RH1442741921862221116222303Ratregion
5056261RH144276202181578766515787867Ratregion
5056325RH144313173181670624016706413Ratregion
5053789RH142852120181491881214918932Ratregion
5053825RH1428721721858299055830077Ratregion
5057454BF4185961011857744055774506Ratregion
5055233RH1436831001833800163380116Ratregion
5057796BE101561159181513906015139220Ratregion
5055683RH143942120181201445912014579Ratregion
5058684BE096939177181494365114943828Ratregion
5058736BF3870081981878599717860169Ratregion
5056109RH144188135181529723515297370Ratregion
5056571RH144455163181579360115793764Ratregion
505217510.MMHAP35FRD7.seq2011875348227535023Ratregion
5052641RH1421791921865113456511537Ratregion
5053109RH142458255181429547414295729Ratregion
5054729RH1433921201841382574139496Ratregion
5044056RH130384181181203771012037891Ratregion
5044204RH130469181181537887415379055Ratregion
5043548RH130088219181578703415787253Ratregion
5044598RH130696210181529955315299763Ratregion
5048776RH133099220181530833415308554Ratregion
5046500RH131789220181137753511377753Ratregion
5045208RH1310461991841471534147351Ratregion
5047940RH1326162181833363363336554Ratregion
5046932RH132038187181488949914890989Ratregion
5047064RH132113218181946153619461753Ratregion
5047070RH132116190181578636715786557Ratregion
5047074RH1321192101833529303353140Ratregion
5048200RH132766212181556793415568146Ratregion
5048300RH132823217181642554616425763Ratregion
5039826RH1279291941833789913379185Ratregion
5040078RH128076195181516774315167938Ratregion
5042430RH129429202181556845415568656Ratregion
5040734RH128452180181213454112134721Ratregion
5040770RH128473215181643387916434094Ratregion
5040946RH128574210181210415212104362Ratregion
5040390RH1282561671860655646065731Ratregion
5043212RH129896218181586961815869836Ratregion
5076978RH139489206182193410821934314Ratregion
5074768RH138207216181525058015250796Ratregion
5074794RH1382221321865107186510850Ratregion
5077352RH1397071861839040933904281Ratregion
5076010RH1389261761847861954786371Ratregion
5075190RH138450241181538393415384175Ratregion
5077350RH139706218181291920212919420Ratregion
5077830RH139984184181643318516433369Ratregion
5078908RH1406211811833795223379703Ratregion
5080182RH1414321891839061293906318Ratregion
5079048RH140704209182192872521928934Ratregion
5070688RH1346472021839055803906784Ratregion
5072846RH137088183181581291215813095Ratregion
5072934RH137138216181643273016432946Ratregion
5079362RH140952218181417927514179492Ratregion
5080280RH14148901865766456576845Ratregion
5080332RH1415182201839133473913567Ratregion
5071170RH1349281901879564397956630Ratregion
5073398RH137413195181170322111703416Ratregion
5080442RH1415810181652096916521163Ratregion
5080442RH1415810181652096916521163Ratregion
5071254RH1349762091833507373352041Ratregion
5073806RH137649142181492038414920526Ratregion
5073998RH137760155181696305716963212Ratregion
5074238RH137901158181506228815062446Ratregion
5072382RH136817159182193415521934314Ratregion
5066706AU048199258181569241115692669Ratregion
5066712AU0481951811847987044798885Ratregion
5066744AU0481762241874512237451447Ratregion
5067046AU047997180181312563013125810Ratregion
5067598AU047649161181878460518784766Ratregion
5068180AU047300199181428923514289432Ratregion
5069190AU0466591271878950107895134Ratregion
5060084BF388452123182193217521932298Ratregion
5062168BE1128611521838949383895092Ratregion
5060410BE0980571831833754373375620Ratregion
5065738BF4063221661836433573643522Ratregion
5061944AI0298502091861231576123366Ratregion
5065182BE1210932001851800485180248Ratregion
5060548BE110321151181597699715977148Ratregion
5060978BF389632128181577750515777633Ratregion
5066220PMC113197P11811836779703678151Ratregion
5064736BE1084201761833748213374997Ratregion
5066420AU0483671411823658472365907Ratregion
5061624BF3969002261879329397933165Ratregion
5084234AI013305123181241309512414338Ratregion
5086369AI1368541951829237992923994Ratregion
5087150BE1077651641848994344899598Ratregion
5082461BE119476165181479945214799617Ratregion
5086528AI228002150181494087914941029Ratregion
5089005AU048898255182184697721847232Ratregion
5089185AU049006113181638053516380590Ratregion
5089185AU049006113181638053516380650Ratregion
5088389AU0485402381837561013756339Ratregion
5090819AU0499811731832607053260878Ratregion
5090347AU049697214181040451910404732Ratregion
5081513BI2992411631838876923887856Ratregion
5085413BQ210126179181556705015567229Ratregion
5085511AA9438251501862830956283245Ratregion
5080798RH141787150181192871811928868Ratregion
5085363AI548503991833178533317952Ratregion
5085617BM3920711841860645616064746Ratregion
5085679BM3834131531826359102636063Ratregion
5090311AU049676240181244233412442576Ratregion
5081412AI502079200181586508515865285Ratregion
5085904BE0996701511857884515788602Ratregion
5082759BF390037155181414150214141657Ratregion
5081304RH142083220181170388911704109Ratregion
5084902AA85196390181145052911450619Ratregion
5086469AA850207209181529581615296025Ratregion
5085260AW532758197181362859813628795Ratregion
5085812BF388154156182190898021909136Ratregion
5503070Zfp191735181529939315300128Ratregion
5503968UniSTS:257001151181468718714687338Ratregion
5504062px-58c31501824950272495178Ratregion
5506105UniSTS:49836801877767637777432Ratregion
5499539stSG6118066111827298182730449Ratregion
5499539stSG6118066111827298382730449Ratregion
5499583At-8L-2631132181107969411080826Ratregion
5500184REN160272551878102667810521Ratregion
5500617RH1362582011833796313379832Ratregion
5501570RH26327163181492033414920497Ratregion
5501802MARC_13470-13471:1002300368:2125181538505915386080Ratregion
5502263C76941205181203785612038058Ratregion
5502662X97986134181150283011502964Ratregion
5502735GALNT1129181556240615563364Ratregion
5502257L33779111181145202911452140Ratregion
5502413RH124760215181195075711950972Ratregion
Position Markers

Flank 1: (D18Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2182,249,477 - 2,249,700 (+)MAPPER
Rnor_6.0182,477,096 - 2,477,318NCBI
Rnor_5.0182,495,834 - 2,496,056UniSTS
RGSC_v3.4182,571,631 - 2,571,853RGD
RGSC_v3.4182,571,631 - 2,571,853UniSTS
RGSC_v3.1182,571,631 - 2,571,853RGD
Celera182,126,553 - 2,126,775UniSTS
FHH x ACI Map180.0RGD
FHH x ACI Map180.0UniSTS
Peak: (D18Rat46)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2182,249,477 - 2,249,700 (+)MAPPER
Rnor_6.0182,477,096 - 2,477,318NCBI
Rnor_5.0182,495,834 - 2,496,056UniSTS
RGSC_v3.4182,571,631 - 2,571,853RGD
RGSC_v3.4182,571,631 - 2,571,853UniSTS
RGSC_v3.1182,571,631 - 2,571,853RGD
Celera182,126,553 - 2,126,775UniSTS
FHH x ACI Map180.0RGD
FHH x ACI Map180.0UniSTS
Flank 2: (D18Rat38)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21822,066,242 - 22,066,430 (+)MAPPER
Rnor_6.01823,184,227 - 23,184,414NCBI
Rnor_5.01822,914,726 - 22,914,913UniSTS
RGSC_v3.41822,807,203 - 22,807,391RGD
RGSC_v3.41822,807,204 - 22,807,391UniSTS
RGSC_v3.11822,833,850 - 22,834,037RGD
Celera1821,843,993 - 21,844,186UniSTS
RH 3.4 Map18245.6UniSTS
RH 3.4 Map18245.6RGD
RH 2.0 Map18650.3RGD
SHRSP x BN Map1811.4999RGD
FHH x ACI Map1813.91RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
70178EaezExperimental allergic encephalomyelitis QTL z2.4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)181235778612874620Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general only when poorly differentiated multiplicity was considered the LOD=4.3 1625309
qtl_general number of animals used: 20 ACI/SegHsd, 20 WF/CrCrli, 20 ACI/SegHsd x WF/CrCrli F1 and 138 F2; software used: MAPMAKER/EXP3.0 and ANOVA; measurement method: lesions were counted and a caliper was used to determine their maximum and minimum diameter. 1625309
qtl_general WF allele responsible for lower poorly differentiated multiplicity and surface area 1625309
qtl_general colorectal lesions appeared as spherical or ovoid lesions with a velvety smooth or slightly bossy appearance in the entire length of colon and rectum 1625309
qtl_general inducing agent: injection of s.c.dimethylhydrazine (20 mg/kg body weight) weekly for 26 weeks 1625309