Ipo5-ps1 (importin 5, pseudogene 1) - Rat Genome Database

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Gene: Ipo5-ps1 (importin 5, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Ipo5-ps1
Name: importin 5, pseudogene 1
RGD ID: 6502448
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: importin-5-like; LOC100909691; LOC364820; similar to RAN binding protein 5
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81812,307,061 - 12,314,738 (-)NCBIGRCr8
mRatBN7.21812,037,723 - 12,039,781 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01815,438,421 - 15,441,383 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01815,217,776 - 15,220,015 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,501,570 - 12,503,688 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1812,044,711 - 12,047,673 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181221923726822399Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181221923726822399Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181221923726822399Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181221923726822399Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181221923726822399Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181221923726822399Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181221923726822399Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
RH130384  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,037,710 - 12,037,891 (-)MAPPERmRatBN7.2
mRatBN7.21598,039,233 - 98,039,872 (+)MAPPERmRatBN7.2
Rnor_6.015106,291,486 - 106,292,124NCBIRnor6.0
Rnor_6.01815,440,311 - 15,440,491NCBIRnor6.0
Rnor_5.01815,219,000 - 15,219,180UniSTSRnor5.0
Rnor_5.015109,687,385 - 109,688,023UniSTSRnor5.0
RGSC_v3.41812,501,618 - 12,501,798UniSTSRGSC3.4
RGSC_v3.415106,020,163 - 106,020,801UniSTSRGSC3.4
Celera1596,847,637 - 96,848,275UniSTS
Celera1812,045,603 - 12,045,783UniSTS
Cytogenetic Map15q24UniSTS
C76941  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,037,856 - 12,038,058 (-)MAPPERmRatBN7.2
mRatBN7.21598,037,637 - 98,039,268 (+)MAPPERmRatBN7.2
Rnor_6.015106,289,890 - 106,291,520NCBIRnor6.0
Rnor_6.01815,440,144 - 15,440,345NCBIRnor6.0
Rnor_5.01815,218,833 - 15,219,034UniSTSRnor5.0
Rnor_5.015109,685,789 - 109,687,419UniSTSRnor5.0
RGSC_v3.41812,501,764 - 12,501,965UniSTSRGSC3.4
RGSC_v3.415106,018,567 - 106,020,197UniSTSRGSC3.4
Celera1596,846,041 - 96,847,671UniSTS
Celera1812,045,749 - 12,045,950UniSTS
Cytogenetic Map15q24UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-8219 BioCyc
NCBI Gene LOC100909691 ENTREZGENE
PhenoGen Ipo5-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ipo5-ps1  importin 5, pseudogene 1  LOC100909691  importin-5-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC100909691  importin-5-like  LOC364820  similar to RAN binding protein 5  Data merged from RGD:1588519 737654 PROVISIONAL
2012-07-05 LOC100909691  importin-5-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC364820  similar to RAN binding protein 5      Symbol and Name status set to provisional 70820 PROVISIONAL