Scort10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Scort10 (Serum corticosterone level QTL 10) Rattus norvegicus

Symbol: Scort10
Name: Serum corticosterone level QTL 10
RGD ID: 9590248
Also known as: plasma cort at basal level; plasma corticosterone at basal level
Trait: blood corticosterone amount   (VT:0005345)    
Measurement Type: plasma corticosterone level   (CMO:0001173)    
LOD Score: 19.71
P Value: 0.001
Variance: 24.6
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181 - 25,758,124RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0181 - 25,999,214RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0181 - 26,009,785RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.4181 - 26,107,031RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
1. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3916Ttrtransthyretin181194179111951008Rat
71046B4galt6beta-1,4-galactosyltransferase 6181195838212015247Rat
3411Procprotein C, inactivator of coagulation factors Va and VIIIa182376436723774816Rat
2264Camk4calcium/calmodulin-dependent protein kinase IV182458298824811918Rat
69280Cdh2cadherin 21877767047990934Rat
2666Gata6GATA binding protein 61821881212219532Rat
727845F8coagulation factor VIII18140848172330Rat
631411Nrepneuronal regeneration related protein182501706925046564Rat
620899Pik3c3phosphatidylinositol 3-kinase, catalytic subunit type 3182184528221934387Rat
621566Kctd1potassium channel tetramerization domain containing 11861223906316434Rat
3081Mep1bmeprin A subunit beta181236612612392840Rat
708414Vom2r75vomeronasal 2 receptor, 75187019499837Rat
628693Npc1NPC intracellular cholesterol transporter 11833794823425100Rat
620967Map3k2mitogen activated protein kinase kinase kinase 2182380721823879722Rat
628888Osbpl1aoxysterol binding protein-like 1A1839040064094635Rat
727963Zfp24zinc finger protein 24181529568715307319Rat
621485Rnf138ring finger protein 138181229155712315931Rat
620424Rock1Rho-associated coiled-coil containing protein kinase 11811145321236345Rat
628776Lama3laminin subunit alpha 31835231683751722Rat
620358Galnt1polypeptide N-acetylgalactosaminyltransferase 1181548901515568849Rat
1304664Slc39a6solute carrier family 39 member 6181586487415885417Rat
2143Aqp4aquaporin 41865079036524558Rat
620246Cetn1centrin 118651591652293Rat
620631Hrh4histamine receptor H41841662704182426Rat
621786Bin1bridging integrator 1182400973124067267Rat
68397Syt4synaptotagmin 4182303697323046380Rat
735039Colec12collectin sub-family member 1218732950920620Rat
1307345Zfp521zinc finger protein 5211847759525068592Rat
1306345Snrpd1small nuclear ribonucleoprotein D1 polypeptide1816968381707400Rat
1305072Slc25a46solute carrier family 25, member 46182321595423244917Rat
1306419Elp2elongator acetyltransferase complex subunit 2181588594015921564Rat
1308565Polr2dRNA polymerase II subunit D182341809723425228Rat
1307374Rprd1aregulation of nuclear pre-mRNA domain containing 1A181579141815839338Rat
1310655Abhd3abhydrolase domain containing 3, phospholipase1817232031778488Rat
1307195Mib1MIB E3 ubiquitin protein ligase 11818025191926988Rat
1306034Epb41l4aerythrocyte membrane protein band 4.1 like 4A182540546125615392Rat
1304762Iws1interacts with SUPT6H, CTD assembly factor 1182369549623737363Rat
1305869Asxl3ASXL transcriptional regulator 3181359352913766324Rat
1306095Zscan30zinc finger and SCAN domain containing 30181524514015266204Rat
1306757Rnf125ring finger protein 125181225406612275719Rat
1310199Ino80cINO80 complex subunit C181537876415398574Rat
1310833Riok3RIO kinase 31833277763353350Rat
1311143Dsg2desmoglein 2181184620711904630Rat
1311782Dsc3desmocollin 3181137975911413797Rat
1310768Dsc1desmocollin 1181149993611556801Rat
1312031Zfp35zinc finger protein 35181526885215284334Rat
1307915Ammecr1lAMMECR1 like182338611423411177Rat
1308657Thoc1THO complex 1189836061020379Rat
1311657Sap130Sin3A associated protein 130182324433723345368Rat
1311659Psma8proteasome 20S subunit alpha 81858635945928226Rat
1309426Dsc2desmocollin 2181145039211482476Rat
1309475Stard4StAR-related lipid transfer domain containing 4182481468324830024Rat
1309925Dsg1desmoglein 1181167468711705383Rat
1307630Celf4CUGBP, Elav-like family member 4181678657817065045Rat
1308160Ccdc178coiled-coil domain containing 178181307483413472732Rat
1306569Mtmr1myotubularin related protein 118215031248541Rat
1307139Ercc3ERCC excision repair 3, TFIIH core complex helicase subunit182388361323914326Rat
1309102Trappc8trafficking protein particle complex subunit 8181210387412180422Rat
735015Dsg4desmoglein 4181172097511756234Rat
1309230Wdr33WD repeat domain 33182343223323535460Rat
1310295Gypcglycophorin C (Gerbich blood group)182416073824193408Rat
1307654Rit2Ras-like without CAAX 2182256540322921648Rat
1307302Chst9carbohydrate sulfotransferase 91865763916851078Rat
1308872Rbbp8RB binding protein 8, endonuclease1829229852988851Rat
1310663Nol4nucleolar protein 4181393249914294873Rat
1305273Lims2LIM zinc finger domain containing 2182355381323592137Rat
1310571Tpgs2tubulin polyglutamylase complex subunit 2181643262816489604Rat
1308496Mocosmolybdenum cofactor sulfurase181593165415977415Rat
1305516Cables1Cdk5 and Abl enzyme substrate 11830765563181183Rat
1559877RGD1559877similar to 60S ribosomal protein L29 (P23)181567142615671913Rat
1562608RGD1562608similar to KIAA1328 protein181648856916776373Rat
1561764Sft2d3SFT2 domain containing 3182353710523539305Rat
1564673MGC116121similar to RIKEN cDNA 2700062C07181577934915786772Rat
1311919Ss18SS18 subunit of BAF chromatin remodeling complex1857730425835696Rat
1562997Taf4bTATA-box binding protein associated factor 4b1859527376086408Rat
1560045LOC498826LRRGT00165181219476712207125Rat
1560916Fundc2FUN14 domain containing 218128473138232Rat
1562371Greb1lGREB1 like retinoic acid receptor coactivator1813923301629483Rat
1564026RGD1564026similar to L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M)182173890921739826Rat
1564290Ubbp4ubiquitin B pseudogene 4182424283624243530Rat
1311825Usp14ubiquitin specific peptidase 141810181111057727Rat
1311805Rmc1regulator of MON1-CCZ11833598483379764Rat
1585827LOC680962similar to fibrillarin1865390746541753Rat
1561153Myo7bmyosin VIIb182358830723669841Rat
1587260Ankrd29ankyrin repeat domain 291834363013494292Rat
1587262LOC498816similar to RNA binding motif, single stranded interacting protein 218796846797934Rat
1586479Tslpthymic stromal lymphopoietin182444740924454244Rat
1586463Wdr36WD repeat domain 36182447364524501773Rat
1561771RGD1561771similar to EEF1A1 protein18684820686801Rat
1586730LOC684764similar to cytokine induced protein 29 kDa1815990821602262Rat
1561985Dtnadystrobrevin, alpha181468719314944232Rat
1561788RGD1561788similar to homolog of yeast ribosome biogenesis regulatory protein RRS1181066424110665367Rat
1563879LOC498829Ab2-143181557139615575435Rat
1563861RGD1563861similar to ribosomal protein L10181500387215004638Rat
1561352Mtcp1mature T-cell proliferation 118126189130123Rat
1566345LOC498836LRRG00125182421873424219463Rat
1565635Zfp136zinc finger protein 13618609472618190Rat
1584390PotefPOTE ankyrin domain family, member F182362651823629132Rat
1583536LOC681155similar to 60S ribosomal protein L6 (Neoplasm-related protein C140)1894849369514865Rat
1566178Klhl14kelch-like family member 14181280425312917828Rat
1589785Gpr17G protein-coupled receptor 17182357621223583177Rat
1592101LOC291761similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)181143704511438463Rat
1592102LOC291758similar to leucine aminopeptidase 3181158152811582618Rat
1592103Dsg3desmoglein 3181179890511833415Rat
1588518LOC364832similar to heat shock protein 8182244294622444872Rat
1588520LOC364817similar to prohibitin1869698746971761Rat
1588182LOC680784similar to mitochondrial ribosomal protein S18B1858418135845074Rat
1591344Spata45spermatogenesis associated 45181812551218125881Rat
1588521LOC364811similar to SDA1 domain containing 11820646062066630Rat
1588522LOC364806similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)18686787689788Rat
1585423Ttc39ctetratricopeptide repeat domain 39C1837688023887932Rat
1589056LOC685830similar to tRNA splicing endonuclease 34182047688320478138Rat
1585413Cabyrcalcium binding tyrosine phosphorylation regulated1838920623904391Rat
1590602Tmem241transmembrane protein 2411831680723318340Rat
1590736Mapre2microtubule-associated protein, RP/EB family, member 2181502867515169553Rat
1586622LOC686074similar to 60S ribosomal protein L35182315940123159843Rat
1586633LOC686063similar to cytoplasmic beta-actin182312917123129806Rat
1595453LOC680171similar to SEC13-like 118967396968674Rat
1592104LOC291746similar to Elongation factor 2 (EF-2)181223437412236924Rat
1592105Hsc70-ps2heat shock cognate protein 70, pseudogene 2181621046716212736Rat
1591671LOC681731similar to Voltage-dependent anion-selective channel protein 1 (VDAC-1) (mVDAC1) (mVDAC5) (Outer mitochondrial membrane protein porin 1) (Plasmalemmal porin)182108469821085621Rat
1595554LOC678864similar to ubiquitin-conjugating enzyme variant Kua181020945410281082Rat
1596873Esco1establishment of sister chromatid cohesion N-acetyltransferase 11816305601686803Rat
1596861LOC680026similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G1816648001668290Rat
1591977Impactimpact RWD domain protein1841088724147571Rat
1596770LOC681320similar to 60S ribosomal protein L3 (L4)181160765011608894Rat
1596759LOC681331similar to apoptosis inhibitor 5181163625111642861Rat
1591842Garem1GRB2 associated regulator of MAPK1 subtype 1181242016912585323Rat
1598047LOC681224similar to cyclin D binding myb-like transcription factor 1181122702911229258Rat
2322847LOC100363500hypothetical LOC100363500182421228024213310Rat
2320691LOC100361170AKT interacting protein-like1834249533428838Rat
2322319Fhod3formin homology 2 domain containing 3181599307916425796Rat
2321885LOC10036057240S ribosomal protein S15-like181936632419368584Rat
2321916LOC100360541cyclin B2-like18617183636852Rat
4888581Mir3582microRNA 35821818850631885180Rat
4888552Mir3571microRNA 35711818875261887636Rat
2324544LOC100362510tubulin alpha 6-like181178767211788464Rat
2325528Mir1microRNA 11818875371887623Rat
2325557Mir187microRNA 187181573119415731297Rat
2325571Mir133a1microRNA 133a-11818850821885168Rat
2324800LOC100363089cytochrome b5 type A (microsomal)-like181417912214179563Rat
6495224LOC100911019serine/arginine-rich splicing factor 3-like182527432525274813Rat
6501875LOC100909782uncharacterized LOC1009097821821730742187558Rat
6502448LOC100909691importin-5-like181203772312039781Rat
6499927LOC100910201uncharacterized LOC100910201182340323323417959Rat
6504280Zfp397zinc finger protein 397181524176415253148Rat
7527767LOC102555023uncharacterized LOC102555023181291489212918657Rat
7524065LOC102547344lateral signaling target protein 2 homolog181825008418253006Rat
7509723LOC102553011uncharacterized LOC102553011181544996315478670Rat
7533724LOC102555022uncharacterized LOC1025550221826299132636062Rat
7516452LOC102546723uncharacterized LOC1025467231840318414035774Rat
7647017Cmc4C-X9-C motif containing 418125308132163Rat
7648889LOC102546931uncharacterized LOC102546931182119168421291797Rat
7650892LOC102549754zinc finger protein 726-like18427830428828Rat
7635703LOC102551904uncharacterized LOC102551904181183503811837513Rat
7641502LOC102546350uncharacterized LOC102546350182011147320130786Rat
7590894Tex51testis expressed 51182409301524097223Rat
7598702LOC102553404uncharacterized LOC102553404181100116211019181Rat
7565214LOC102549443uncharacterized LOC102549443182505782525070704Rat
7583405LOC102551724uncharacterized LOC1025517241863652616447354Rat
7551261LOC102551287uncharacterized LOC1025512871855539435607857Rat
7604961LOC102546433uncharacterized LOC10254643318121784126065Rat
7566111LOC102555446mitochondrial thiamine pyrophosphate carrier-like1831059303106927Rat
7567273LOC102547033zinc finger protein 624-like18359334371945Rat
7695838LOC102546844uncharacterized LOC102546844182109663621105059Rat
7705638LOC102553967protein RCC2-like1816389871641047Rat
7683954LOC102547190uncharacterized LOC1025471901843634984372177Rat
7687052LOC102547510uncharacterized LOC102547510181858231618799213Rat
7690490LOC102549314uncharacterized LOC1025493141848541894859291Rat
7733249LOC102551486uncharacterized LOC102551486181201461012021819Rat
7670702LOC102551809uncharacterized LOC102551809181192270811928930Rat
7699321LOC102552794proline-rich nuclear receptor coactivator 1-like181529034315294509Rat
7678926LOC10255357260S ribosomal protein L32-like181583163315832047Rat
7679439LOC102551353uncharacterized LOC1025513531856594795680970Rat
7710893LOC102546308ATP synthase subunit g, mitochondrial-like1837451153748135Rat
9089883LOC10369417660 kDa heat shock protein, mitochondrial pseudogene1815879311590330Rat
9179798LOC103694167uncharacterized LOC1036941671831820283196136Rat
9188764LOC10369417060S ribosomal protein L27a pseudogene1872017497202240Rat
9208196LOC103694180uncharacterized LOC103694180181728731017298283Rat
9292390LOC103694159NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 pseudogene1811204291120655Rat
9258222LOC10369416960S ribosomal protein L391863263166326696Rat
9301181LOC10369417539S ribosomal protein L30, mitochondrial pseudogene182003614220041958Rat
9433650LOC103694950uncharacterized LOC103694950182245930122466852Rat
11469925LOC108348747uncharacterized LOC1083487471854288945441470Rat
11474431LOC108348866non-histone chromosomal protein HMG-17 pseudogene1840436384047054Rat
11436391LOC10834884640S ribosomal protein S10 pseudogene1822676782268175Rat
11458426LOC10834875440S ribosomal protein S26-like181213877112139362Rat
11431944LOC108348751uncharacterized LOC1083487511868532376865278Rat
11461088LOC108348847uncharacterized LOC1083488471854212635428777Rat
11419083LOC108348752uncharacterized LOC1083487521870559367070705Rat
11422045LOC108348758uncharacterized LOC108348758181806733018139478Rat
11410492LOC108348741uncharacterized LOC1083487411819659881972501Rat
11389422LOC108348750uncharacterized LOC1083487501864867606506611Rat
11391260LOC108348753uncharacterized LOC1083487531889629389079803Rat
11481642LOC108348742uncharacterized LOC1083487421819478491965675Rat
41105457LOC120098438U6 spliceosomal RNA182525852925258634Rat
41321995LOC120098185tubulin alpha chain-like181178826111791295Rat
41136700LOC120098387small nucleolar RNA SNORA17182423632524236450Rat
41113362LOC120098262uncharacterized LOC120098262182023826120243346Rat
41138763LOC120098298UBA-like domain-containing protein 21819016011902099Rat
41168946LOC120098418small nucleolar RNA U3181113045211130556Rat
41250271LOC120098265uncharacterized LOC120098265181249349512509604Rat
41283036LOC120098266uncharacterized LOC120098266182473052024765008Rat
41279374LOC120098222uncharacterized LOC120098222182378721123806982Rat
41115189LOC120098364small nucleolar RNA SNORA21182347861323478747Rat
41171414LOC120098302igE-binding protein-like182230425214Rat
41327931LOC120098443U1 spliceosomal RNA182011027520110438Rat
41093685LOC120098360small nucleolar RNA SNORA13182540445225404585Rat
41187057LOC120098277zinc finger protein 813-like18488576489553Rat
41261369LOC120098232uncharacterized LOC1200982321853573335379176Rat
41329969LOC120098228uncharacterized LOC120098228182399037924009573Rat
41148153LOC120098267uncharacterized LOC120098267182514858725165025Rat
41149760LOC120098197uncharacterized LOC120098197181707994717092021Rat
41176885LOC120098138uncharacterized LOC1200981381863959546406241Rat
41212325LOC120098434U6 spliceosomal RNA1875149757515080Rat
41122946LOC120098299ribosomal protein L18-like182280094422801850Rat
41154066LOC120098206uncharacterized LOC1200982061855116915553876Rat
41101543LOC120098381small nucleolar RNA SNORA17182425045024250580Rat
41193066LOC120098272uncharacterized LOC120098272181208142912093465Rat
41369178LOC120098221uncharacterized LOC1200982211881283678132815Rat
41369412LOC120098112uncharacterized LOC120098112181607964916090990Rat
41396114LOC120098231uncharacterized LOC1200982311845977334615485Rat
41217115LOC120098243uncharacterized LOC1200982431854853595495255Rat
41217121LOC120098432U6 spliceosomal RNA182477719624777302Rat
41397459LOC120098389small nucleolar RNA SNORA171869943926994528Rat
41219354LOC120098431U6 spliceosomal RNA181268326212683364Rat
41105460LOC120098427U6 spliceosomal RNA18274507274613Rat
41129914LOC120098207uncharacterized LOC120098207181506484215071132Rat
41186084LOC120098303zinc finger protein 850-like18405654443575Rat
41271556LOC120098382small nucleolar RNA SNORA171882652818265410Rat
41350816LOC120098426U6 spliceosomal RNA181551852015518626Rat
41401461LOC120098396small nucleolar RNA SNORA17181439743314397563Rat
41081752LOC120098304WW domain binding protein 1-like18674850678381Rat
41106525LOC120098305DNA-directed RNA polymerases I, II, and III subunit RPABC3-like1812576661258121Rat
41198857LOC120098153uncharacterized LOC120098153182206823022110779Rat
41230128LOC120098439U6 spliceosomal RNA181741828017418367Rat
41273281LOC120098419U4 spliceosomal RNA181890879318908908Rat
41165265LOC12009811540S ribosomal protein S29-like182098242820982760Rat
41295872LOC120098331uncharacterized LOC1200983311836930753768701Rat
41320385LOC120098332uncharacterized LOC1200983321836578833661456Rat
41084204LOC120098213uncharacterized LOC1200982131824816832492307Rat
41109350LOC120098395small nucleolar RNA SNORA17181982761519827741Rat
41202102LOC120098269uncharacterized LOC120098269182540307925405115Rat
40972159LOC120098297uncharacterized LOC120098297182419345424207788Rat
40972921NEWGENE_40938314transfer RNA serine (anticodon AGA)1883872238387304Rat
41340234LOC120098216uncharacterized LOC120098216182455839224572223Rat
40977739LOC120098356small nucleolar RNA SNORA701818567641856880Rat
41014578LOC120098385small nucleolar RNA SNORA17182570042225700556Rat
41015119LOC120098349small nucleolar RNA SNORA62/SNORA6 family182432317024323325Rat
41015557LOC120098257uncharacterized LOC120098257181414626814153430Rat
40955952NEWGENE_40934091transfer RNA alanine (anticodon AGC)182436171824361789Rat
40980709LOC120098415U2 spliceosomal RNA181402922314029406Rat
40956852LOC120098268uncharacterized LOC120098268182516595525169703Rat
41003880LOC120098253uncharacterized LOC120098253182294782022955187Rat
40933636LOC120098248uncharacterized LOC1200982481854582705462819Rat
40960381LOC120098160uncharacterized LOC1200981601832077933220103Rat
40989749LOC120098416U2 spliceosomal RNA182535315825353328Rat
40990016LOC120098141uncharacterized LOC120098141182147176321570788Rat
40940132LOC120098122uncharacterized LOC120098122181494893914969988Rat
40942616LOC120098383small nucleolar RNA SNORA17181782146517821596Rat
40943294LOC120098229uncharacterized LOC120098229182409705724101106Rat
40943959LOC12009830960S ribosomal protein L23a-like182565633325656683Rat
41076199LOC120098330uncharacterized LOC1200983301838897233899593Rat
41244839LOC120098390small nucleolar RNA SNORA171817049451705053Rat
41078696LOC120098181uncharacterized LOC120098181182426174624265324Rat
41080340LOC120098111uncharacterized LOC120098111181665440416672905Rat
41338301LOC120098413U2 spliceosomal RNA1837495233749672Rat
41151483LOC120098391small nucleolar RNA SNORA171832925623292696Rat
41336072LOC120098343U7 small nuclear RNA182563899525639057Rat
41221388LOC12009826060S ribosomal protein L36a-like1813578171358712Rat
41059240LOC120098296uncharacterized LOC120098296182420836324212249Rat
41315285LOC120098402small nucleolar RNA SNORA17182205448422054597Rat
41033437LOC120098417small nucleolar RNA U31896485019648587Rat
41061447LOC120098123uncharacterized LOC120098123181483976214857935Rat
41061823LOC120098263uncharacterized LOC120098263182286871922879737Rat
41301905LOC120098397small nucleolar RNA SNORA171861091936109323Rat
41334317LOC120098328uncharacterized LOC1200983281840117054016669Rat
41303873LOC120098193uncharacterized LOC120098193182451873624530112Rat
41065389LOC120098376small nucleolar RNA SNORA17182307170523071836Rat
41237235LOC120098388U1 spliceosomal RNA181212848412128622Rat
41304700LOC120098203uncharacterized LOC1200982031879106227951444Rat
41307046LOC120098423U6 spliceosomal RNA181585287215852978Rat
41310718LOC120098329uncharacterized LOC1200983291841000404108710Rat
41311100LOC120098425U6 spliceosomal RNA1824972622497368Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10287D18Wox14148182458653424586682Ratregion
33949D18Mit1496181527559715275693Ratregion
33971D18Mit7204181287462012874824Ratregion
33975D18Mit1223818805014805250Ratregion
34059D18Mit2108181495133714951437Ratregion
34296D3Mgh24116181499676814996831Ratregion
34550D18Mgh9136182479697724797117Ratregion
11461D18Mit1245181194429911944544Ratregion
11462D18Wox7200181194427311944420Ratregion
33606D18Mit397181963384219633937Ratregion
33705D18Mit131481820883482088498Ratregion
36129D18Rat301361855845375584636Ratregion
37466D3Rat1051331822691082269241Ratregion
37480D18Rat481481857040065704152Ratregion
37578D18Rat65195181179151811791709Ratregion
35366D18Rat28158181136754511367701Ratregion
35511D18Rat311281851858585185979Ratregion
35521D18Rat29158181352979513529957Ratregion
37020D18Rat37158181730060017300786Ratregion
37128D18Rat1332131832065053206708Ratregion
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Position Markers

Peak: (D18Rat111)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,258,004 - 3,258,245 (+)MAPPER
Rnor_6.0183,499,094 - 3,499,334NCBI
Rnor_5.0183,509,665 - 3,509,905UniSTS
RGSC_v3.4183,606,816 - 3,607,247RGD
RGSC_v3.4183,606,822 - 3,607,062UniSTS
RGSC_v3.1183,606,822 - 3,607,062RGD
Celera183,124,576 - 3,124,816UniSTS
RH 3.4 Map1844.3RGD
RH 3.4 Map1844.3UniSTS
RH 2.0 Map18894.4RGD
SHRSP x BN Map182.52RGD
Cytogenetic Map18p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
70178EaezExperimental allergic encephalomyelitis QTL z2.4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)181235778612874620Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general confidence interval 0.0-39.7 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: blood samples were taken in the morning and collected on EDTA, centrifuged at 4000g for 10 min to extract the plasma, plasma corticosterone was measured with an in-house RIA kit using an anti-Cort antibody 8694157
qtl_general software package used: MultiQTL software 8694157
qtl_general an additional peak at D18Rat25 with confidence interval 13.4-37.8 Mb was observed 8694157