PMC311048P1 Marker Search Result - Rat Genome Database

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Marker: PMC311048P1

Symbol: PMC311048P1
Previously known as:
RGD ID: 5035927
Expected Size: 89 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,818,659 - 28,818,748 (+)MAPPERmRatBN7.2
Rnor_6.01830,188,352 - 30,188,440NCBIRnor6.0
Rnor_5.01829,896,899 - 29,896,987UniSTSRnor5.0
RGSC_v3.41829,900,486 - 29,900,574UniSTSRGSC3.4
Celera1828,525,314 - 28,525,402UniSTS
Cytogenetic Map18p11UniSTS
Is Marker For: Genes:   Pcdha3   Pcdha4   Pcdha8   Pcdha10   Pcdha12   Pcdha13   Pcdha1   Pcdha7   Pcdhac1   Pcdha9   Pcdha6   Pcdha2   Pcdha5   Pcdhac2   Pcdha11  


Annotation


References - curated
# Reference Title Reference Citation
1. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer CTCTGTGCACCTGGAGGAG
Reverse Primer CTGGTGTTGCACTGGATACTGTT
 

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
620337Pcdha4protocadherin alpha 4182858104028846214Rat
41284742LOC120098166protocadherin alpha-8-like182862606028818723Rat
41085620LOC120098168uncharacterized LOC120098168182880800628820392Rat

Nucleotide Sequences
RefSeq Transcripts NM_053933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB045586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB113399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY573985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH619204.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 116741 UniSTS
  116742 UniSTS
  116778 UniSTS
  116779 UniSTS
  116780 UniSTS
  116781 UniSTS
  393085 UniSTS
  393086 UniSTS
  393087 UniSTS
  393088 UniSTS
  393089 UniSTS
  393090 UniSTS
  393091 UniSTS
  393092 UniSTS
  394223 UniSTS