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Gene: Pcdha11 (protocadherin alpha 11) Rattus norvegicus
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Symbol: Pcdha11
Name: protocadherin alpha 11
Description: Predicted to have calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to localize to the membrane. Orthologous to human PCDHA11 (protocadherin alpha 11); INTERACTS WITH 1,1-dichloroethene (ortholog); 17beta-estradiol (ortholog); 3-isobutyl-1-methyl-7H-xanthine (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: cadherin-related neuronal receptor 11; PCDH-alpha9 homolog; protocadherin alpha 9 homolog; protocadherin alpha-11; protocadherin alpha-12
Orthologs:
Homo sapiens (human) : PCDHA11 (protocadherin alpha 11)  HGNC  Alliance
Mus musculus (house mouse) : Pcdha11 (protocadherin alpha 11)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : PCDHA11 (protocadherin alpha 11)
Canis lupus familiaris (dog) : PCDHA11 (protocadherin alpha 11)
Sus scrofa (pig) : PCDHA11 (protocadherin alpha 11)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01830,017,918 - 30,215,896 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,987,206 - 30,215,897 (+)Ensembl
Rnor_5.01829,715,168 - 29,924,443 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,728,603 - 29,928,030 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1828,356,751 - 28,552,754 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Pcdha11
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1594480
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.