Epb41l4a (erythrocyte membrane protein band 4.1 like 4A) - Rat Genome Database

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Gene: Epb41l4a (erythrocyte membrane protein band 4.1 like 4A) Rattus norvegicus
Analyze
Symbol: Epb41l4a
Name: erythrocyte membrane protein band 4.1 like 4A
RGD ID: 1306034
Description: Predicted to enable cytoskeletal protein binding activity. Predicted to be involved in actomyosin structure organization. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytoskeleton. Orthologous to human EPB41L4A (erythrocyte membrane protein band 4.1 like 4A); INTERACTS WITH 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: band 4.1-like protein 4A; Epb4.1l4a; erythrocyte protein band 4.1-like 4a; LOC307514
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,680,169 - 25,890,998 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1825,680,171 - 25,888,498 (-)EnsemblGRCr8
mRatBN7.21825,405,461 - 25,615,392 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1825,406,057 - 25,615,149 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1825,533,402 - 25,614,494 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01826,296,366 - 26,377,354 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,629,144 - 25,710,238 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01826,570,051 - 26,788,586 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1826,570,647 - 26,658,892 (-)Ensemblrn6Rnor6.0
Rnor_5.01826,283,764 - 26,500,216 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41826,270,035 - 26,350,940 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1825,149,125 - 25,230,765 (-)NCBICelera
RGSC_v3.11826,296,631 - 26,506,030 (-)NCBI
Cytogenetic Map18p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoskeleton  (IBA,IEA)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Epb41l4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81825,680,169 - 25,890,998 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1825,680,171 - 25,888,498 (-)EnsemblGRCr8
mRatBN7.21825,405,461 - 25,615,392 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1825,406,057 - 25,615,149 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1825,533,402 - 25,614,494 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01826,296,366 - 26,377,354 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01825,629,144 - 25,710,238 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01826,570,051 - 26,788,586 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1826,570,647 - 26,658,892 (-)Ensemblrn6Rnor6.0
Rnor_5.01826,283,764 - 26,500,216 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41826,270,035 - 26,350,940 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1825,149,125 - 25,230,765 (-)NCBICelera
RGSC_v3.11826,296,631 - 26,506,030 (-)NCBI
Cytogenetic Map18p12NCBI
EPB41L4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385112,141,829 - 112,419,935 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5112,142,441 - 112,419,313 (-)Ensemblhg38GRCh38
GRCh375111,478,137 - 111,754,974 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365111,526,214 - 111,782,909 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345111,528,597 - 111,782,909NCBI
Celera5107,444,034 - 107,700,724 (-)NCBICelera
Cytogenetic Map5q22.1-q22.2NCBI
HuRef5106,677,500 - 106,934,094 (-)NCBIHuRef
CHM1_15110,931,551 - 111,188,234 (-)NCBICHM1_1
T2T-CHM13v2.05112,652,255 - 112,930,859 (-)NCBIT2T-CHM13v2.0
Epb41l4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391833,929,380 - 34,143,678 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1833,929,380 - 34,140,019 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381833,796,327 - 34,007,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1833,796,327 - 34,006,966 (-)Ensemblmm10GRCm38
MGSCv371833,955,981 - 34,166,860 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361833,921,128 - 34,132,007 (-)NCBIMGSCv36mm8
Celera1834,233,123 - 34,450,634 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.19NCBI
Epb41l4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,876,345 - 3,097,365 (+)Ensembl
ChiLan1.0NW_0049554182,876,345 - 3,097,365 (+)NCBIChiLan1.0ChiLan1.0
EPB41L4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24107,420,114 - 107,679,970 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15105,573,774 - 105,833,270 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05107,524,306 - 107,783,354 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15113,325,676 - 113,586,003 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5113,328,040 - 113,585,549 (-)EnsemblpanPan2panpan1.1
EPB41L4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13507,516 - 686,861 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3507,069 - 686,751 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha31,908,010 - 2,088,734 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03430,971 - 535,511 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3353,001 - 535,509 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13343,019 - 523,728 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03340,208 - 520,539 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03503,661 - 684,169 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Epb41l4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,941,925 - 155,176,898 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365316,432,927 - 6,669,668 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365316,435,014 - 6,669,794 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2117,235,472 - 117,502,424 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12117,235,187 - 117,501,698 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22121,986,206 - 122,126,208 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12315,482,824 - 15,742,956 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2315,480,565 - 15,742,359 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603462,726,101 - 62,983,859 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474329,961,687 - 30,215,681 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474329,963,689 - 30,216,767 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Epb41l4a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11510,331,028 - 10,536,910 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Epb41l4a
1469 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:305
Count of miRNA genes:200
Interacting mature miRNAs:229
Transcripts:ENSRNOT00000038247
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181221923726822399Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181221923726822399Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181221923726822399Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181221923726822399Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181221923726822399Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181221923726822399Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181221923726822399Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
RH133537  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,405,528 - 25,405,729 (+)MAPPERmRatBN7.2
Rnor_6.01826,570,119 - 26,570,319NCBIRnor6.0
Rnor_5.01826,283,832 - 26,284,032UniSTSRnor5.0
RGSC_v3.41826,269,509 - 26,269,709UniSTSRGSC3.4
Celera1825,148,599 - 25,148,799UniSTS
RH 3.4 Map18339.5UniSTS
Cytogenetic Map18p12UniSTS
BF389079  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,407,169 - 25,407,305 (+)MAPPERmRatBN7.2
Rnor_6.01826,571,760 - 26,571,895NCBIRnor6.0
Rnor_5.01826,285,473 - 26,285,608UniSTSRnor5.0
RGSC_v3.41826,271,150 - 26,271,285UniSTSRGSC3.4
Celera1825,150,240 - 25,150,375UniSTS
RH 3.4 Map18336.8UniSTS
Cytogenetic Map18p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 64 59 6 328 164 11 139 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001437518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000038247   ⟹   ENSRNOP00000032777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,680,171 - 25,862,587 (-)Ensembl
mRatBN7.2 Ensembl1825,406,057 - 25,485,157 (-)Ensembl
Rnor_6.0 Ensembl1826,570,647 - 26,658,892 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000086729   ⟹   ENSRNOP00000069707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,680,171 - 25,867,204 (-)Ensembl
mRatBN7.2 Ensembl1825,406,243 - 25,592,895 (-)Ensembl
Rnor_6.0 Ensembl1826,571,039 - 26,656,879 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099986   ⟹   ENSRNOP00000091694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,680,171 - 25,888,498 (-)Ensembl
mRatBN7.2 Ensembl1825,406,243 - 25,615,149 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000123913   ⟹   ENSRNOP00000109339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,680,171 - 25,818,189 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142918   ⟹   ENSRNOP00000104301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1825,680,171 - 25,888,498 (-)Ensembl
RefSeq Acc Id: NM_001107397   ⟹   NP_001100867
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,680,169 - 25,761,253 (-)NCBI
mRatBN7.21825,406,055 - 25,487,099 (-)NCBI
Rnor_6.01826,570,645 - 26,658,892 (-)NCBI
Rnor_5.01826,283,764 - 26,500,216 (-)NCBI
RGSC_v3.41826,270,035 - 26,350,940 (-)RGD
Celera1825,149,125 - 25,230,765 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254583   ⟹   XP_006254645
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,680,169 - 25,890,998 (-)NCBI
mRatBN7.21825,405,461 - 25,615,391 (-)NCBI
Rnor_6.01826,570,051 - 26,788,586 (-)NCBI
Rnor_5.01826,283,764 - 26,500,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006254584   ⟹   XP_006254646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,680,169 - 25,890,998 (-)NCBI
mRatBN7.21825,405,461 - 25,615,391 (-)NCBI
Rnor_6.01826,570,051 - 26,788,586 (-)NCBI
Rnor_5.01826,283,764 - 26,500,216 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096875   ⟹   XP_038952803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,680,169 - 25,773,322 (-)NCBI
mRatBN7.21825,405,461 - 25,499,168 (-)NCBI
RefSeq Acc Id: XM_063277376   ⟹   XP_063133446
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,680,169 - 25,890,998 (-)NCBI
RefSeq Acc Id: XM_063277377   ⟹   XP_063133447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81825,680,169 - 25,829,396 (-)NCBI
RefSeq Acc Id: NP_001100867   ⟸   NM_001107397
- UniProtKB: A0A0G2JW20 (UniProtKB/TrEMBL),   A0A8I6ATD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254646   ⟸   XM_006254584
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254645   ⟸   XM_006254583
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000032777   ⟸   ENSRNOT00000038247
Ensembl Acc Id: ENSRNOP00000069707   ⟸   ENSRNOT00000086729
RefSeq Acc Id: XP_038952803   ⟸   XM_039096875
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000091694   ⟸   ENSRNOT00000099986
RefSeq Acc Id: XP_063133446   ⟸   XM_063277376
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063133447   ⟸   XM_063277377
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000104301   ⟸   ENSRNOT00000142918
Ensembl Acc Id: ENSRNOP00000109339   ⟸   ENSRNOT00000123913
Protein Domains
FERM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEZ0-F1-model_v2 AlphaFold B5DEZ0 1-504 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306034 AgrOrtholog
BioCyc Gene G2FUF-7979 BioCyc
Ensembl Genes ENSRNOG00000026050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000038247.8 UniProtKB/TrEMBL
  ENSRNOT00000086729.3 UniProtKB/TrEMBL
  ENSRNOT00000099986 ENTREZGENE
  ENSRNOT00000099986.2 UniProtKB/TrEMBL
  ENSRNOT00000123913.1 UniProtKB/TrEMBL
  ENSRNOT00000142918 ENTREZGENE
  ENSRNOT00000142918.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro Band4.1-like4A UniProtKB/TrEMBL
  Band_41_domain UniProtKB/TrEMBL
  Ez/rad/moesin-like UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_sf UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report rno:307514 UniProtKB/TrEMBL
NCBI Gene 307514 ENTREZGENE
PANTHER 4.1 G PROTEIN UniProtKB/TrEMBL
  PTHR23280:SF4 UniProtKB/TrEMBL
Pfam FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
PhenoGen Epb41l4a PhenoGen
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026050 RatGTEx
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47031 UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2JW20 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8XH40_RAT UniProtKB/TrEMBL
  A0ABK0LFG9_RAT UniProtKB/TrEMBL
  A0ABK0LZZ8_RAT UniProtKB/TrEMBL
  B5DEZ0 ENTREZGENE, UniProtKB/TrEMBL
  F1LQE5 ENTREZGENE
UniProt Secondary F1LQE5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Epb4.1l4a  erythrocyte protein band 4.1-like 4a   Epb4.1l4a_predicted  erythrocyte protein band 4.1-like 4a (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Epb4.1l4a_predicted  erythrocyte protein band 4.1-like 4a (predicted)      Symbol and Name status set to approved 70820 APPROVED