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Gene: Ecscr (endothelial cell surface expressed chemotaxis and apoptosis regulator) Rattus norvegicus

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Symbol:

Ecscr

Name:

endothelial cell surface expressed chemotaxis and apoptosis regulator

RGD ID:

1594804

Description:

Predicted to be involved in negative regulation of angiogenesis; positive regulation of endothelial cell apoptotic process; and positive regulation of proteasomal protein catabolic process. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and plasma membrane. Orthologous to human ECSCR (endothelial cell surface expressed chemotaxis and apoptosis regulator); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

apoptosis regulator through modulating IAP expression; Aria; Ecscr-ps1; endothelial cell-specific chemotaxis regulator; endothelial cell-specific chemotaxis regulator, pseudogene 1; hypothetical protein LOC682650; hypothetical protein LOC689248; LOC689248

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,583,791 - 27,593,184 (-)	NCBI		GRCr8
mRatBN7.2	18	27,309,711 - 27,319,106 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,309,718 - 27,319,032 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	18	28,507,167 - 28,516,567 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,506,934 - 28,516,209 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	28,219,716 - 28,229,043 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	28,328,191 - 28,340,335 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	27,043,217 - 27,052,411 (-)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecscr	Rat	autosomal dominant intellectual developmental disorder 31		ISO	ECSCR (Homo sapiens)	8554872	ClinVar Annotator: match by term: NEURODEVELOPMENTAL DISORDER WITH NEONATAL RESPIRATORY INSUFFICIENCY more ...	ClinVar	PMID:28492532
Ecscr	Rat	autosomal dominant nonsyndromic deafness 1		ISO	ECSCR (Homo sapiens)	8554872	ClinVar Annotator: match by term: DEAFNESS more ...	ClinVar	PMID:28492532
Ecscr	Rat	familial adenomatous polyposis 1		ISO	ECSCR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial adenomatous polyposis 1	ClinVar	PMID:17963004 more ...
Ecscr	Rat	Hereditary Neoplastic Syndromes		ISO	ECSCR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hereditary cancer-predisposing syndrome	ClinVar	PMID:17963004 more ...
Ecscr	Rat	Neurodevelopmental Disorders		ISO	ECSCR (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Ecscr	Rat	STING-associated vasculopathy with onset in infancy		ISO	ECSCR (Homo sapiens)	8554872	ClinVar Annotator: match by term: STING-associated vasculopathy with onset in infancy	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecscr	Rat	1,2-dimethylhydrazine	increases expression	ISO	Ecscr (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of ECSCR mRNA	CTD	PMID:22206623
Ecscr	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Ecscr (Mus musculus)	6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of ECSCR mRNA]	CTD	PMID:22206623
Ecscr	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of ECSCR mRNA	CTD	PMID:33387578 and PMID:34747641
Ecscr	Rat	2,4-dibromophenyl 2,4,5-tribromophenyl ether	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	2 more ...	CTD	PMID:26705709
Ecscr	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	bisphenol S results in decreased expression of ECSCR mRNA	CTD	PMID:33476716
Ecscr	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of ECSCR mRNA	CTD	PMID:36041667
Ecscr	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Ecscr (Mus musculus)	6480464	bisphenol S results in increased expression of ECSCR mRNA	CTD	PMID:30951980
Ecscr	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	Ecscr (Mus musculus)	6480464	Fenretinide results in increased expression of ECSCR mRNA	CTD	PMID:28973697
Ecscr	Rat	arotinoid acid	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[4-(2-(5 more ...	CTD	PMID:34480604
Ecscr	Rat	arsenous acid	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of ECSCR mRNA	CTD	PMID:26705709
Ecscr	Rat	atrazine	decreases expression	EXP		6480464	Atrazine results in decreased expression of ECSCR mRNA	CTD	PMID:36841081
Ecscr	Rat	benzo[a]pyrene	increases methylation	ISO	ECSCR (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of ECSCR promoter	CTD	PMID:27901495
Ecscr	Rat	benzo[a]pyrene	increases expression	ISO	Ecscr (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of ECSCR mRNA	CTD	PMID:32417428
Ecscr	Rat	bisphenol A	increases expression	ISO	Ecscr (Mus musculus)	6480464	bisphenol A results in increased expression of ECSCR mRNA	CTD	PMID:30951980 and PMID:32156529
Ecscr	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of ECSCR mRNA	CTD	PMID:36041667
Ecscr	Rat	bisphenol F	increases expression	ISO	Ecscr (Mus musculus)	6480464	bisphenol F results in increased expression of ECSCR mRNA	CTD	PMID:30951980
Ecscr	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of ECSCR mRNA	CTD	PMID:36041667
Ecscr	Rat	cadmium atom	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ECSCR mRNA	CTD	PMID:35301059
Ecscr	Rat	cadmium dichloride	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of ECSCR mRNA	CTD	PMID:35301059
Ecscr	Rat	CHIR 99021	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[4-(2-(5 more ...	CTD	PMID:34480604
Ecscr	Rat	chlorpyrifos	increases expression	ISO	Ecscr (Mus musculus)	6480464	Chlorpyrifos results in increased expression of ECSCR mRNA	CTD	PMID:37019170
Ecscr	Rat	chromium(6+)	affects expression	ISO	Ecscr (Mus musculus)	6480464	chromium hexavalent ion affects the expression of ECSCR mRNA	CTD	PMID:28472532
Ecscr	Rat	copper(II) sulfate	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of ECSCR mRNA	CTD	PMID:19549813
Ecscr	Rat	cortisol	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[4-(2-(5 more ...	CTD	PMID:34480604
Ecscr	Rat	diarsenic trioxide	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	Arsenic Trioxide results in decreased expression of ECSCR mRNA	CTD	PMID:26705709
Ecscr	Rat	dibutyl phthalate	decreases expression	ISO	Ecscr (Mus musculus)	6480464	Dibutyl Phthalate results in decreased expression of ECSCR mRNA	CTD	PMID:21266533
Ecscr	Rat	dibutyl phthalate	increases expression	ISO	Ecscr (Mus musculus)	6480464	Dibutyl Phthalate results in increased expression of ECSCR mRNA	CTD	PMID:21266533
Ecscr	Rat	doxorubicin	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	Doxorubicin results in decreased expression of ECSCR mRNA	CTD	PMID:29803840
Ecscr	Rat	folic acid	multiple interactions	ISO	Ecscr (Mus musculus)	6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of ECSCR mRNA]	CTD	PMID:22206623
Ecscr	Rat	Heptachlor epoxide	decreases expression	ISO	Ecscr (Mus musculus)	6480464	Heptachlor Epoxide results in decreased expression of ECSCR mRNA	CTD	PMID:25270620
Ecscr	Rat	L-ascorbic acid	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[[Ascorbic Acid co-treated with Chir 99021 co-treated with XAV939 co-treated with BMP4 protein co-treated with FGF1 protein co-treated with WNT3A protein co-treated with HGF protein] co-treated with [INHBA protein binds to INHBA protein]] results in decreased expression of ECSCR mRNA	CTD	PMID:34480604
Ecscr	Rat	L-ascorbic acid 2-phosphate	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[[ascorbate-2-phosphate co-treated with Chir 99021 co-treated with XAV939 co-treated with BMP4 protein] co-treated with [INHBA protein binds to INHBA protein]] results in decreased expression of ECSCR mRNA	CTD	PMID:34480604
Ecscr	Rat	lipopolysaccharide	increases expression	ISO	Ecscr (Mus musculus)	6480464	Lipopolysaccharides results in increased expression of ECSCR mRNA	CTD	PMID:27339419
Ecscr	Rat	paracetamol	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	Acetaminophen results in decreased expression of ECSCR mRNA	CTD	PMID:21420995
Ecscr	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of ECSCR mRNA	CTD	PMID:33387578
Ecscr	Rat	SB 431542	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[LDN 193189 co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with EGF protein co-treated with FGF2 protein] results in decreased expression of ECSCR mRNA	CTD	PMID:34480604
Ecscr	Rat	silver atom	decreases expression	ISO	Ecscr (Mus musculus)	6480464	Silver results in decreased expression of ECSCR mRNA	CTD	PMID:27131904
Ecscr	Rat	silver(0)	decreases expression	ISO	Ecscr (Mus musculus)	6480464	Silver results in decreased expression of ECSCR mRNA	CTD	PMID:27131904
Ecscr	Rat	tetrachloromethane	increases expression	ISO	Ecscr (Mus musculus)	6480464	Carbon Tetrachloride results in increased expression of ECSCR mRNA	CTD	PMID:31919559
Ecscr	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of ECSCR mRNA	CTD	PMID:34492290
Ecscr	Rat	triadimefon	decreases expression	ISO	ECSCR (Homo sapiens)	6480464	triadimefon results in decreased expression of ECSCR mRNA	CTD	PMID:26705709
Ecscr	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of ECSCR mRNA	CTD	PMID:33387578
Ecscr	Rat	valproic acid	affects expression	ISO	ECSCR (Homo sapiens)	6480464	Valproic Acid affects the expression of ECSCR mRNA	CTD	PMID:25979313
Ecscr	Rat	valproic acid	increases expression	ISO	ECSCR (Homo sapiens)	6480464	Valproic Acid results in increased expression of ECSCR mRNA	CTD	PMID:28001369
Ecscr	Rat	XAV939	multiple interactions	ISO	ECSCR (Homo sapiens)	6480464	[[ascorbate-2-phosphate co-treated with Chir 99021 co-treated with XAV939 co-treated with BMP4 protein] co-treated with [INHBA protein binds to INHBA protein]] results in decreased expression of ECSCR mRNA and [[Ascorbic Acid co-treated with Chir 99021 co-treated with XAV939 co-treated with BMP4 protein co-treated with FGF1 protein co-treated with WNT3A protein co-treated with HGF protein] co-treated with [INHBA protein binds to INHBA protein]] results in decreased expression of ECSCR mRNA	CTD	PMID:34480604

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecscr	Rat	negative regulation of angiogenesis	acts_upstream_of_or_within	ISO	ECSCR (Homo sapiens)	1624291	PMID:19416853	RGD	PMID:19416853
Ecscr	Rat	negative regulation of angiogenesis	acts_upstream_of_or_within	ISO	Ecscr (Mus musculus)	1624291	PMID:19416853	RGD	PMID:19416853
Ecscr	Rat	negative regulation of angiogenesis	involved_in	IBA	MGI:1915795 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecscr	Rat	positive regulation of endothelial cell apoptotic process	acts_upstream_of_or_within	ISO	ECSCR (Homo sapiens)	1624291	PMID:19416853	RGD	PMID:19416853
Ecscr	Rat	positive regulation of endothelial cell apoptotic process	involved_in	IBA	PANTHER:PTN002006527 and UniProtKB:Q19T08	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecscr	Rat	positive regulation of proteasomal protein catabolic process	acts_upstream_of_or_within	ISO	ECSCR (Homo sapiens)	1624291	PMID:19416853	RGD	PMID:19416853
Ecscr	Rat	positive regulation of proteasomal protein catabolic process	involved_in	IBA	PANTHER:PTN002006527 and UniProtKB:Q19T08	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecscr	Rat	cytosol	located_in	ISO	ECSCR (Homo sapiens)	1624291	PMID:19416853	RGD	PMID:19416853
Ecscr	Rat	cytosol	located_in	ISO	Ecscr (Mus musculus)	1624291	PMID:19416853	RGD	PMID:19416853
Ecscr	Rat	cytosol	is_active_in	IBA	MGI:1915795 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Ecscr	Rat	intracellular membrane-bounded organelle	located_in	ISO	ECSCR (Homo sapiens)	1624291		RGD	GO_REF:0000052
Ecscr	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Ecscr	Rat	nucleoplasm	located_in	ISO	ECSCR (Homo sapiens)	1624291		RGD	GO_REF:0000052
Ecscr	Rat	plasma membrane	located_in	ISO	ECSCR (Homo sapiens)	1624291	PMID:19416853	RGD	GO_REF:0000052 and PMID:19416853
Ecscr	Rat	plasma membrane	located_in	ISO	Ecscr (Mus musculus)	1624291	PMID:19416853	RGD	PMID:19416853
Ecscr	Rat	plasma membrane	is_active_in	IBA	MGI:1915795 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ecscr	Rat	protein binding	enables	ISO	ECSCR (Homo sapiens)	1624291	UniProtKB:O14818 more ...	RGD	PMID:19416853 and PMID:21593423

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:19416853	PMID:24338479

Ecscr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,583,791 - 27,593,184 (-)	NCBI		GRCr8
mRatBN7.2	18	27,309,711 - 27,319,106 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,309,718 - 27,319,032 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	18	28,507,167 - 28,516,567 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,506,934 - 28,516,209 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	28,219,716 - 28,229,043 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	28,328,191 - 28,340,335 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	27,043,217 - 27,052,411 (-)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

ECSCR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	139,448,560 - 139,462,743 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	139,448,560 - 139,462,743 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	138,784,249 - 138,842,328 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	138,817,313 - 138,822,504 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	134,904,524 - 134,917,004 (-)	NCBI		Celera
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	133,976,927 - 133,984,822 (-)	NCBI		HuRef
HuRef	5	133,973,970 - 133,974,590 (-)	NCBI		HuRef
CHM1_1	5	138,269,725 - 138,274,901 (-)	NCBI		CHM1_1
CHM1_1	5	138,216,851 - 138,217,469 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	139,974,387 - 139,987,818 (-)	NCBI		T2T-CHM13v2.0

Ecscr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	35,846,139 - 35,855,460 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	35,846,139 - 35,855,409 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	35,713,086 - 35,722,413 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	35,713,086 - 35,722,356 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	35,872,743 - 35,881,145 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	35,839,063 - 35,847,465 (-)	NCBI		MGSCv36	mm8
Celera	18	36,169,173 - 36,177,565 (-)	NCBI		Celera
Cytogenetic Map	18	B2	NCBI
cM Map	18	19.22	NCBI

Ecscr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	1,109,092 - 1,115,997 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	1,108,805 - 1,116,338 (+)	NCBI	ChiLan1.0	ChiLan1.0

ECSCR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	134,715,413 - 134,730,371 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	132,854,965 - 132,870,071 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	134,819,568 - 134,833,508 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	140,940,578 - 140,955,137 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	140,940,578 - 140,955,140 (-)	Ensembl	panpan1.1		panPan2

ECSCR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	34,763,814 - 34,773,491 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	31,866,062 - 31,875,564 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	35,219,054 - 35,227,401 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	35,217,688 - 35,243,000 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	32,270,349 - 32,279,851 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	33,136,664 - 33,146,167 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	33,889,703 - 33,898,041 (-)	NCBI		UU_Cfam_GSD_1.0

Ecscr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	153,068,890 - 153,077,585 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	8,532,353 - 8,542,551 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	8,533,926 - 8,542,516 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ECSCR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	141,343,803 - 141,352,603 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	141,343,818 - 141,352,618 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	147,153,633 - 147,162,663 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ECSCR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	42,124,181 - 42,137,577 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	42,123,875 - 42,137,196 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	35,750,604 - 35,763,890 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ecscr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	32,246,966 - 32,256,617 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	32,248,768 - 32,272,352 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ecscr
41 total Variants

Assembly: mRatBN7.2

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
18	27318690	27318691	C	T	snv	HXB4/IpcvMcwi (2020)	View more Information

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
18	28516145	28516146	C	T	snv	HXB4/IpcvMcwi (2020)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	110
Count of miRNA genes:	68
Interacting mature miRNAs:	73
Transcripts:	ENSRNOT00000060689, ENSRNOT00000072580
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat

D18Mit15

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	18	27,581,336 - 27,581,421 (+)	Marker Load Pipeline
mRatBN7.2	18	27,307,256 - 27,307,341 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	28,504,713 - 28,504,797	NCBI	Rnor6.0
Rnor_5.0	18	28,217,262 - 28,217,346	UniSTS	Rnor5.0
RGSC_v3.4	18	28,329,666 - 28,329,750	UniSTS	RGSC3.4
RGSC_v3.4	18	28,329,665 - 28,329,750	RGD	RGSC3.4
RGSC_v3.1	18	28,356,168 - 28,356,559	RGD
Celera	18	27,040,623 - 27,040,707	UniSTS
Cytogenetic Map	18	p11	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001432559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000072580 ⟹ ENSRNOP00000067313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	27,309,765 - 27,318,822 (-)	Ensembl
Rnor_6.0 Ensembl	18	28,506,934 - 28,516,209 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097911 ⟹ ENSRNOP00000087965

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	27,310,432 - 27,318,747 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110568 ⟹ ENSRNOP00000088865

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	27,309,765 - 27,317,832 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120258 ⟹ ENSRNOP00000079454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	27,309,718 - 27,319,032 (-)	Ensembl

RefSeq Acc Id:

XM_008772057 ⟹ XP_008770279

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,583,791 - 27,592,878 (-)	NCBI
mRatBN7.2	18	27,309,711 - 27,318,795 (-)	NCBI
Rnor_6.0	18	28,507,167 - 28,516,564 (-)	NCBI

Sequence:

show sequence

GTGGGTTGAACTTAGAGCAAGGTTCTTGGAGAGAATGTGTCTGCAAAAGTAGGCTTGGGGGGAACGCAGGTGCTGCAGTTGGAAGGACCTGAAGGATCCCTCTGAGAGGAAGGAAGCTCCTGGAGAGC
CAGCCCCCGCCCCCGCCCCCGCCCCGTCTCACCCCAGTACTCCCTCTCTCTTCTCTACTATGGACAGAGAATACACAGAGGAGCCTGCTACACACCCAGCTGATCTGGGGACCAACGGAGCCATGAGG
CTGGGTTCAGCAATCCTCAGTTTACTCCTGCTCCAAGGTTACAGCTCTCAGCCTACGACAACGCAGACCTCTCAGGAAATTCTACAGAAGTCATCTCAGGCCTCCTTGGCATCCAGTCAGCCTGTGAC
ACCAAGGTCAAGCACCATGGATAGACACTCTCTTTCCTTGCCCGACCCCATGTCGTTCCAGACCCAGAGACACACACCTGGCACAGGGGCTCCAGAAAGCAGCAGCAGCAGCAGCAGGAGAGGAGAAT
CATCTCTGGATGCTACTCCCAGTCCAGGAACCTCCAGCCTTCGGACAAAAGAGGGGACCATCCTGCCTACCCCCACATCAGAGTCAGTGCTAACTGTGGCTGCCTTTGGTGTCATCAGCTTCATTGTC
ATCCTGGTGGTTGTAGTGATCGTTCTGGTCAGTGTGGTCAGCCTAAGGTTTAAGTGTCGGAAGAACAAGGAGTCTGAAGATCCACAGAAACCCGGGAGTTCAGGGCTATCTGAAAGCTGCTCCACAGC
CAATGGAGAAAAAGACAGCATCACACTCATCTCCATGAAGAATATCAACACGAACAACAGCAAAGGCTGCACCTCAGCAGAAAAGATTCTTTAAAAGTGACCTGGAGTGGCGATGTGTCCACGAATGA
TTCAGTGTCCAGTGGCCATAAGGAAGAAGAGACGAGAAGAGACTGGTGAAGGCAGCAGACCACACATAAATTATTTTATTTCACGCCTGCTCCCAGCTCTAAAGGATAGGAAATTCCTCTAGATCCAG
AAGCAACCTACCACAGGAGAGACTCCCTTCCATTTGGAAGCCACGCTGGACATTCAACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAACCCCCCCTCC
TCCTCCTGCTCCTCCTCAGAAACTCAGGGATGAGGAGGCAATGGAGCAGGACTTAAGGAAGCAATGAGGTAGACTGTCCATGCTACTCGAATTAAAGTTATTTTCTGGCCTGGAA

hide sequence

RefSeq Acc Id:

XM_017601091 ⟹ XP_017456580

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,583,791 - 27,592,896 (-)	NCBI
mRatBN7.2	18	27,309,711 - 27,318,797 (-)	NCBI
Rnor_6.0	18	28,507,167 - 28,516,567 (-)	NCBI

Sequence:

show sequence

CTGGTGGGTTGAACTTAGAGCAAGGTTCTTGGAGAGAATGTGTCTGCAAAAGTAGGCTTGGGGGGAACGCAGGTGCTGCAGTTGGAAGGACCTGAAGGATCCCTCTGAGAGGAAGGAAGCTCCTGGAG
AGCCAGCCCCCGCCCCCGCCCCCGCCCCGTCTCACCCCAGTACTCCCTCTCTCTTCTCTACTATGGACAGAGAATACACAGAGGAGCCTGCTACACACCCAGCTGATCTGGGGACCAACGGAGCCATG
AGGCTGGGTTCAGCAATCCTCAGTTTACTCCTGCTCCAAGGTTACAGCTCTCAGCCTACGACAACGCAGACCTCTCAGGGAGACAGATCTTCCTCAGAGCCTGGCAGCTCAGGGCTTCCGCTTAGCAC
CATTACCCCAGAAATTCTACAGAAGTCATCTCAGGCCTCCTTGGCATCCAGTCAGCCTGTGACACCAAGGTCAAGCACCATGGATAGACACTCTCTTTCCTTGCCCGACCCCATGTCGTTCCAGACCC
AGAGACACACACCTGGCACAGGGGCTCCAGAAAGCAGCAGCAGCAGCAGCAGGAGAGGAGAATCATCTCTGGATGCTACTCCCAGTCCAGGAACCTCCAGCCTTCGGACAAAAGAGGGGACCATCCTG
CCTACCCCCACATCAGAGTCAGTGCTAACTGTGGCTGCCTTTGGTGTCATCAGCTTCATTGTCATCCTGGTGGTTGTAGTGATCGTTCTGGTCAGTGTGGTCAGCCTAAGGTTTAAGTGTCGGAAGAA
CAAGGAGTCTGAAGATCCACAGAAACCCGGGAGTTCAGGGCTATCTGAAAGCTGCTCCACAGCCAATGGAGAAAAAGACAGCATCACACTCATCTCCATGAAGAATATCAACACGAACAACAGCAAAG
GCTGCACCTCAGCAGAAAAGATTCTTTAAAAGTGACCTGGAGTGGCGATGTGTCCACGAATGATTCAGTGTCCAGTGGCCATAAGGAAGAAGAGACGAGAAGAGACTGGTGAAGGCAGCAGACCACAC
ATAAATTATTTTATTTCACGCCTGCTCCCAGCTCTAAAGGATAGGAAATTCCTCTAGATCCAGAAGCAACCTACCACAGGAGAGACTCCCTTCCATTTGGAAGCCACGCTGGACATTCAACCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAACCCCCCCTCCTCCTCCTGCTCCTCCTCAGAAACTCAGGGATGAGGAGGCAATGGAGCAGGACTTAAGGAAGCAAT
GAGGTAGACTGTCCATGCTACTCGAATTAAAGTTATTTTCTGGCCTGGAA

hide sequence

RefSeq Acc Id:

XM_017601092 ⟹ XP_017456581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,583,791 - 27,592,882 (-)	NCBI
mRatBN7.2	18	27,309,711 - 27,318,796 (-)	NCBI
Rnor_6.0	18	28,507,167 - 28,516,565 (-)	NCBI

Sequence:

show sequence

GGTGGGTTGAACTTAGAGCAAGGTTCTTGGAGAGAATGTGTCTGCAAAAGTAGGCTTGGGGGGA
ACGCAGGTGCTGCAGTTGGAAGGACCTGAAGGATCCCTCTGAGAGGAAGGAAGCTCCTGGAGAGCCAGCCCCCGCCCCCGCCCCCGCCCCGTCTCACCCCAGTACTCCCTCTCTCTTCTCTACTATGG
ACAGAGAATACACAGAGGAGCCTGCTACACACCCAGCTGATCTGGGGACCAACGGAGCCATGAGGCTGGGTTCAGCAATCCTCAGTTTACTCCTGCTCCAAGGTTACAGCTCTCAGCCTACGACAACG
CAGACCTCTCAGGGAGACAGATCTTCCTCAGAGCCTGGCAGCTCAGGGCTTCCGCTTAGCACCATTACCCCAGAAATTCTACAGAAGTCATCTCAGGCCTCCTTGGCATCCAGTCAGCCTGTGACACC
AAGGTCAAGCACCATGGATAGACACTCTCTTTCCTTGCCCGACCCCATGTCGTTCCAGACCCAGAGACACACACCTGAATCATCTCTGGATGCTACTCCCAGTCCAGGAACCTCCAGCCTTCGGACAA
AAGAGGGGACCATCCTGCCTACCCCCACATCAGAGTCAGTGCTAACTGTGGCTGCCTTTGGTGTCATCAGCTTCATTGTCATCCTGGTGGTTGTAGTGATCGTTCTGGTCAGTGTGGTCAGCCTAAGG
TTTAAGTGTCGGAAGAACAAGGAGTCTGAAGATCCACAGAAACCCGGGAGTTCAGGGCTATCTGAAAGCTGCTCCACAGCCAATGGAGAAAAAGACAGCATCACACTCATCTCCATGAAGAATATCAA
CACGAACAACAGCAAAGGCTGCACCTCAGCAGAAAAGATTCTTTAAAAGTGACCTGGAGTGGCGATGTGTCCACGAATGATTCAGTGTCCAGTGGCCATAAGGAAGAAGAGACGAGAAGAGACTGGTG
AAGGCAGCAGACCACACATAAATTATTTTATTTCACGCCTGCTCCCAGCTCTAAAGGATAGGAAATTCCTCTAGATCCAGAAGCAACCTACCACAGGAGAGACTCCCTTCCATTTGGAAGCCACGCTG
GACATTCAACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAACCCCCCCTCCTCCTCCTGCTCCTCCTCAGAAACTCAGGGATGAGGAGGCAATGGAGCA
GGACTTAAGGAAGCAATGAGGTAGACTGTCCATGCTACTCGAATTAAAGTTATTTTCTGGCCTGGAA

hide sequence

RefSeq Acc Id:

XM_017601093 ⟹ XP_017456582

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,583,791 - 27,593,184 (-)	NCBI
mRatBN7.2	18	27,309,711 - 27,319,106 (-)	NCBI
Rnor_6.0	18	28,507,167 - 28,516,566 (-)	NCBI

Sequence:

show sequence

TGGTGGGTTGAACTTAGAGCAAGGTTCTTGGAGAGAATGTGTCTGCAAAAGTAGGCTTGGGGGGAACGCAGGTGCTGCAGTTGGAAGGACCTGAAGGATCCCTCTGAGAGGAAGAGAATACACAGAGG
AGCCTGCTACACACCCAGCTGATCTGGGGACCAACGGAGCCATGAGGCTGGGTTCAGCAATCCTCAGTTTACTCCTGCTCCAAGGTTACAGCTCTCAGCCTACGACAACGCAGACCTCTCAGGGAGAC
AGATCTTCCTCAGAGCCTGGCAGCTCAGGGCTTCCGCTTAGCACCATTACCCCAGAAATTCTACAGAAGTCATCTCAGGCCTCCTTGGCATCCAGTCAGCCTGTGACACCAAGGTCAAGCACCATGGA
TAGACACTCTCTTTCCTTGCCCGACCCCATGTCGTTCCAGACCCAGAGACACACACCTGGCACAGGGGCTCCAGAAAGCAGCAGCAGCAGCAGCAGGAGAGGAGAATCATCTCTGGATGCTACTCCCA
GTCCAGGAACCTCCAGCCTTCGGACAAAAGAGGGGACCATCCTGCCTACCCCCACATCAGAGTCAGTGCTAACTGTGGCTGCCTTTGGTGTCATCAGCTTCATTGTCATCCTGGTGGTTGTAGTGATC
GTTCTGGTCAGTGTGGTCAGCCTAAGGTTTAAGTGTCGGAAGAACAAGGAGTCTGAAGATCCACAGAAACCCGGGAGTTCAGGGCTATCTGAAAGCTGCTCCACAGCCAATGGAGAAAAAGACAGCAT
CACACTCATCTCCATGAAGAATATCAACACGAACAACAGCAAAGGCTGCACCTCAGCAGAAAAGATTCTTTAAAAGTGACCTGGAGTGGCGATGTGTCCACGAATGATTCAGTGTCCAGTGGCCATAA
GGAAGAAGAGACGAGAAGAGACTGGTGAAGGCAGCAGACCACACATAAATTATTTTATTTCACGCCTGCTCCCAGCTCTAAAGGATAGGAAATTCCTCTAGATCCAGAAGCAACCTACCACAGGAGAG
ACTCCCTTCCATTTGGAAGCCACGCTGGACATTCAACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCAACCCCCCCTCCTCCTCCTGCTCCTCCTCAGAA
ACTCAGGGATGAGGAGGCAATGGAGCAGGACTTAAGGAAGCAATGAGGTAGACTGTCCATGCTACTCGAATTAAAGTTATTTTCTGGCCTGGAA

hide sequence

RefSeq Acc Id:

XM_039097302 ⟹ XP_038953230

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,584,513 - 27,593,175 (-)	NCBI
mRatBN7.2	18	27,310,432 - 27,318,798 (-)	NCBI

RefSeq Acc Id:

XM_063277649 ⟹ XP_063133719

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,583,791 - 27,592,877 (-)	NCBI

RefSeq Acc Id:

XM_063277650 ⟹ XP_063133720

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	27,583,791 - 27,593,164 (-)	NCBI


Protein RefSeqs	NP_001419488	(Get FASTA)	NCBI Sequence Viewer
	NP_001419489	(Get FASTA)	NCBI Sequence Viewer
	XP_008770279	(Get FASTA)	NCBI Sequence Viewer
	XP_017456580	(Get FASTA)	NCBI Sequence Viewer
	XP_017456581	(Get FASTA)	NCBI Sequence Viewer
	XP_017456582	(Get FASTA)	NCBI Sequence Viewer
	XP_038953230	(Get FASTA)	NCBI Sequence Viewer
	XP_063133719	(Get FASTA)	NCBI Sequence Viewer
	XP_063133720	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76276	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000067313
	ENSRNOP00000067313.2
	ENSRNOP00000079454
	ENSRNOP00000079454.1
	ENSRNOP00000087965
	ENSRNOP00000087965.1
	ENSRNOP00000088865.1

RefSeq Acc Id:

XP_008770279 ⟸ XM_008772057

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDREYTEEPATHPADLGTNGAMRLGSAILSLLLLQGYSSQPTTTQTSQEILQKSSQASLASSQPVTPRSSTMDRHSLSLPDPMSFQTQRHTPGTGAPESSSSSSRRGESSLDATPSPGTSSLRTKEGT
ILPTPTSESVLTVAAFGVISFIVILVVVVIVLVSVVSLRFKCRKNKESEDPQKPGSSGLSESCSTANGEKDSITLISMKNINTNNSKGCTSAEKIL

hide sequence

RefSeq Acc Id:	XP_017456580 ⟸ XM_017601091
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A8X7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDREYTEEPATHPADLGTNGAMRLGSAILSLLLLQGYSSQPTTTQTSQGDRSSSEPGSSGLPLSTITPEILQKSSQASLASSQPVTPRSSTMDRHSLSLPDPMSFQTQRHTPGTGAPESSSSSSRRGE SSLDATPSPGTSSLRTKEGTILPTPTSESVLTVAAFGVISFIVILVVVVIVLVSVVSLRFKCRKNKESEDPQKPGSSGLSESCSTANGEKDSITLISMKNINTNNSKGCTSAEKIL hide sequence

RefSeq Acc Id:	XP_017456582 ⟸ XM_017601093
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A8X7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLGSAILSLLLLQGYSSQPTTTQTSQGDRSSSEPGSSGLPLSTITPEILQKSSQASLASSQPVTPRSSTMDRHSLSLPDPMSFQTQRHTPGTGAPESSSSSSRRGESSLDATPSPGTSSLRTKEGTI LPTPTSESVLTVAAFGVISFIVILVVVVIVLVSVVSLRFKCRKNKESEDPQKPGSSGLSESCSTANGEKDSITLISMKNINTNNSKGCTSAEKIL hide sequence

RefSeq Acc Id:	XP_017456581 ⟸ XM_017601092
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A8X7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDREYTEEPATHPADLGTNGAMRLGSAILSLLLLQGYSSQPTTTQTSQGDRSSSEPGSSGLPLSTITPEILQKSSQASLASSQPVTPRSSTMDRHSLSLPDPMSFQTQRHTPESSLDATPSPGTSSLR TKEGTILPTPTSESVLTVAAFGVISFIVILVVVVIVLVSVVSLRFKCRKNKESEDPQKPGSSGLSESCSTANGEKDSITLISMKNINTNNSKGCTSAEKIL hide sequence

Ensembl Acc Id:

ENSRNOP00000067313 ⟸ ENSRNOT00000072580

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RCJ4-F1-model_v2	AlphaFold	M0RCJ4	1-224	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700716

Promoter ID:

EPDNEW_R11237

Type:

initiation region

Name:

Ecscr_1

Description:

endothelial cell surface expressed chemotaxis and apoptosis regulator

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	28,516,172 - 28,516,232	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-7896	BioCyc
Ensembl Genes	ENSRNOG00000039593	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000072580	ENTREZGENE
	ENSRNOT00000072580.4	UniProtKB/TrEMBL
	ENSRNOT00000097911	ENTREZGENE
	ENSRNOT00000097911.1	UniProtKB/TrEMBL
	ENSRNOT00000110568.1	UniProtKB/TrEMBL
	ENSRNOT00000120258	ENTREZGENE
	ENSRNOT00000120258.1	UniProtKB/TrEMBL
InterPro	ECSCR	UniProtKB/TrEMBL
KEGG Report	rno:689248	UniProtKB/TrEMBL
NCBI Gene	689248	ENTREZGENE
PANTHER	ENDOTHELIAL CELL-SPECIFIC CHEMOTAXIS REGULATOR	UniProtKB/TrEMBL
	PTHR28602	UniProtKB/TrEMBL
Pfam	ECSCR	UniProtKB/TrEMBL
PhenoGen	Ecscr	PhenoGen
PRINTS	ECCREGULATOR	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000039593	RatGTEx
UniProt	A0A8I6A6Y3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8X7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G5C4	ENTREZGENE, UniProtKB/TrEMBL
	A6J2Z3	ENTREZGENE, UniProtKB/TrEMBL
	M0RCJ4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Ecscr	endothelial cell surface expressed chemotaxis and apoptosis regulator	LOC682650	hypothetical protein LOC682650	Data merged from RGD:1596642	1643240	APPROVED
2013-03-06	Ecscr	endothelial cell surface expressed chemotaxis and apoptosis regulator	Ecscr	endothelial cell-specific chemotaxis regulator	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-03-05	Ecscr	endothelial cell-specific chemotaxis regulator	Ecscr-ps1	endothelial cell-specific chemotaxis regulator, pseudogene 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2011-06-08	Ecscr-ps1	endothelial cell-specific chemotaxis regulator, pseudogene 1	Ecscr	endothelial cell-specific chemotaxis regulator	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-04-23	Ecscr	endothelial cell-specific chemotaxis regulator	LOC689248	hypothetical protein LOC689248	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC689248	hypothetical protein LOC689248			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC682650	hypothetical protein LOC682650			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar