Bin1 (bridging integrator 1) - Rat Genome Database

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Gene: Bin1 (bridging integrator 1) Rattus norvegicus
Analyze
Symbol: Bin1
Name: bridging integrator 1
RGD ID: 621786
Description: Enables GTPase binding activity. Involved in positive regulation of GTPase activity; positive regulation of endocytosis; and synaptic vesicle endocytosis. Located in several cellular components, including T-tubule; Z disc; and axon. Is extrinsic component of synaptic vesicle membrane. Human ortholog(s) of this gene implicated in breast carcinoma; centronuclear myopathy 2; and prostate adenocarcinoma. Orthologous to human BIN1 (bridging integrator 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Amph2; amphiphysin II; amphiphysin IIamph2; amphiphysin-like protein; MGC105358; myc box dependent interacting protein 1; myc box-dependent-interacting protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21824,009,731 - 24,067,267 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1825,163,561 - 25,222,135 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01825,163,575 - 25,222,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01824,878,678 - 24,937,712 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,813,407 - 24,872,852 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11824,840,052 - 24,899,497 (+)NCBI
Celera1823,761,867 - 23,818,116 (+)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IEA,ISO,ISS)
axon initial segment  (IDA)
axon terminus  (IDA)
cerebellar mossy fiber  (IDA)
cytoplasm  (IEA,ISO)
cytoskeleton  (IEA,ISO)
cytosol  (IEA,ISO)
dendrite  (IEA,ISO)
endosome  (IEA)
extrinsic component of synaptic vesicle membrane  (IDA)
glutamatergic synapse  (IDA)
I band  (IDA)
lipid tube  (IEA,ISO,ISS)
membrane  (ISO)
microtubule  (ISS)
node of Ranvier  (IDA)
nuclear envelope  (IEA,ISO)
nucleus  (ISO)
plasma membrane  (IBA)
synapse  (IEA,ISO)
synaptic vesicle  (IBA,IDA)
T-tubule  (IDA,IEA,ISO)
varicosity  (IDA)
vesicle  (IEA,ISO)
Z disc  (IDA)

Molecular Function

References

Additional References at PubMed
PMID:8782822   PMID:9195986   PMID:9341169   PMID:9694653   PMID:10036185   PMID:10412034   PMID:11382783   PMID:11498538   PMID:12477932   PMID:15126636   PMID:15953416   PMID:16530520  
PMID:18348166   PMID:19004523   PMID:21700703   PMID:22871113   PMID:23399914   PMID:23917616   PMID:24534009   PMID:24755653   PMID:24836577   PMID:25051234   PMID:25332206   PMID:26506308  
PMID:27179792   PMID:27760323   PMID:28235806   PMID:28755476   PMID:29476059   PMID:31413325  


Genomics

Comparative Map Data
Bin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21824,009,731 - 24,067,267 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1825,163,561 - 25,222,135 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01825,163,575 - 25,222,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01824,878,678 - 24,937,712 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41824,813,407 - 24,872,852 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11824,840,052 - 24,899,497 (+)NCBI
Celera1823,761,867 - 23,818,116 (+)NCBICelera
Cytogenetic Map18p12NCBI
BIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2127,048,027 - 127,107,288 (-)EnsemblGRCh38hg38GRCh38
GRCh382127,048,023 - 127,107,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372127,805,599 - 127,864,730 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362127,522,077 - 127,581,334 (-)NCBINCBI36hg18NCBI36
Build 342127,521,838 - 127,581,094NCBI
Celera2121,117,653 - 121,176,919 (-)NCBI
Cytogenetic Map2q14.3NCBI
HuRef2120,113,344 - 120,172,651 (-)NCBIHuRef
CHM1_12127,809,107 - 127,868,406 (-)NCBICHM1_1
Bin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391832,509,671 - 32,568,793 (+)NCBIGRCm39mm39
GRCm39 Ensembl1832,510,283 - 32,568,790 (+)Ensembl
GRCm381832,376,618 - 32,435,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1832,377,230 - 32,435,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371832,536,871 - 32,595,394 (+)NCBIGRCm37mm9NCBIm37
MGSCv361832,520,267 - 32,578,741 (+)NCBImm8
Celera1832,859,551 - 32,918,381 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.01NCBI
Bin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554593,399,611 - 3,422,621 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554593,376,149 - 3,423,157 (+)NCBIChiLan1.0ChiLan1.0
BIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B127,716,543 - 127,775,378 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B127,716,550 - 127,775,378 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B33,168,767 - 33,228,075 (+)NCBIMhudiblu_PPA_v0panPan3
BIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11923,503,934 - 23,534,407 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1923,375,363 - 23,534,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1923,722,237 - 23,775,092 (+)NCBI
ROS_Cfam_1.01924,808,041 - 24,860,795 (+)NCBI
UMICH_Zoey_3.11923,511,306 - 23,564,134 (+)NCBI
UNSW_CanFamBas_1.01923,700,703 - 23,753,544 (+)NCBI
UU_Cfam_GSD_1.01924,831,980 - 24,884,833 (+)NCBI
Bin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530397,432,383 - 97,489,370 (-)NCBI
SpeTri2.0NW_00493646944,128,308 - 44,185,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1525,328,674 - 25,383,652 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11525,328,679 - 25,379,675 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21529,008,956 - 29,057,185 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1103,112,605 - 3,173,522 (+)NCBI
ChlSab1.1 Ensembl103,113,868 - 3,173,620 (+)Ensembl
Vero_WHO_p1.0NW_02366606119,562,554 - 19,622,802 (-)NCBI
Bin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473213,543,975 - 13,592,942 (-)NCBI

Position Markers
U86405  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21824,066,791 - 24,066,931 (+)MAPPERmRatBN7.2
Rnor_6.01825,221,664 - 25,221,803NCBIRnor6.0
Rnor_5.01824,937,237 - 24,937,376UniSTSRnor5.0
RGSC_v3.41824,872,380 - 24,872,519UniSTSRGSC3.4
Celera1823,817,644 - 23,817,783UniSTS
Cytogenetic Map18p12UniSTS
PMC156129P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21824,044,651 - 24,045,610 (+)MAPPERmRatBN7.2
Rnor_6.01825,198,511 - 25,199,469NCBIRnor6.0
Rnor_5.01824,913,661 - 24,914,619UniSTSRnor5.0
RGSC_v3.41824,848,568 - 24,849,526UniSTSRGSC3.4
Celera1823,795,110 - 23,796,068UniSTS
Cytogenetic Map18p12UniSTS
RH141034  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21824,067,010 - 24,067,196 (+)MAPPERmRatBN7.2
Rnor_6.01825,221,883 - 25,222,068NCBIRnor6.0
Rnor_5.01824,937,456 - 24,937,641UniSTSRnor5.0
RGSC_v3.41824,872,599 - 24,872,784UniSTSRGSC3.4
Celera1823,817,863 - 23,818,048UniSTS
RH 3.4 Map18301.1UniSTS
Cytogenetic Map18p12UniSTS
RH141074  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21824,059,836 - 24,060,025 (+)MAPPERmRatBN7.2
Rnor_6.01825,214,717 - 25,214,905NCBIRnor6.0
Rnor_5.01824,930,290 - 24,930,478UniSTSRnor5.0
RGSC_v3.41824,865,433 - 24,865,621UniSTSRGSC3.4
Celera1823,810,698 - 23,810,886UniSTS
RH 3.4 Map18301.8UniSTS
Cytogenetic Map18p12UniSTS
PMC156129P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21824,043,830 - 24,044,103 (+)MAPPERmRatBN7.2
Rnor_6.01825,197,690 - 25,197,962NCBIRnor6.0
Rnor_5.01824,912,840 - 24,913,112UniSTSRnor5.0
RGSC_v3.41824,847,747 - 24,848,019UniSTSRGSC3.4
Celera1823,794,289 - 23,794,561UniSTS
Cytogenetic Map18p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125999214Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125999214Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135097280Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18138195967Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18138195967Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18138753381Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18371954732487870Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18440751362570466Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18543013441781619Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181467885259678852Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181553296332704022Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181553296332704022Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181553942725961165Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181553942732670473Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181553942753861431Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181553942761499684Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181553955127743236Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181553955127743236Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181553955127743236Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181553955127743236Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181553955127743236Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181553955127743236Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181553955127743236Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181553967129530300Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181553967161985648Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181569587268524999Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181569587287080053Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181569587287080053Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181903103068436105Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181925171732670473Rat
1331735Rf44Renal function QTL 442.981total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181925171732670473Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)182028575887080053Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142163949166639491Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182260373687074531Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182260476461985648Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182318422753861431Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:504
Count of miRNA genes:179
Interacting mature miRNAs:201
Transcripts:ENSRNOT00000017573, ENSRNOT00000042287, ENSRNOT00000049898, ENSRNOT00000051370
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 24 42 26 19 26 8 11 74 35 33 11 8
Low 19 15 15 15 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_053959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC089109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y13380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017573   ⟹   ENSRNOP00000017573
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1825,163,648 - 25,222,135 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000042287   ⟹   ENSRNOP00000042320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1825,163,561 - 25,222,135 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000049898   ⟹   ENSRNOP00000040191
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1825,163,604 - 25,222,132 (+)Ensembl
RefSeq Acc Id: NM_053959   ⟹   NP_446411
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,804 - 24,067,264 (+)NCBI
Rnor_6.01825,163,648 - 25,222,136 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
RGSC_v3.41824,813,407 - 24,872,852 (+)RGD
Celera1823,761,867 - 23,818,116 (+)RGD
Sequence:
RefSeq Acc Id: XM_006254496   ⟹   XP_006254558
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254497   ⟹   XP_006254559
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254499   ⟹   XP_006254561
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254500   ⟹   XP_006254562
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254501   ⟹   XP_006254563
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254502   ⟹   XP_006254564
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254503   ⟹   XP_006254565
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254504   ⟹   XP_006254566
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254505   ⟹   XP_006254567
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Rnor_5.01824,878,678 - 24,937,712 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772014   ⟹   XP_008770236
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600830   ⟹   XP_017456319
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600831   ⟹   XP_017456320
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600832   ⟹   XP_017456321
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Rnor_6.01825,163,575 - 25,222,139 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096550   ⟹   XP_038952478
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
RefSeq Acc Id: XM_039096551   ⟹   XP_038952479
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
RefSeq Acc Id: XM_039096552   ⟹   XP_038952480
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
RefSeq Acc Id: XM_039096553   ⟹   XP_038952481
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
RefSeq Acc Id: XM_039096554   ⟹   XP_038952482
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
RefSeq Acc Id: XM_039096555   ⟹   XP_038952483
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
RefSeq Acc Id: XM_039096556   ⟹   XP_038952484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21824,009,731 - 24,067,267 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_446411   ⟸   NM_053959
- UniProtKB: O08839 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006254567   ⟸   XM_006254505
- Peptide Label: isoform X20
- UniProtKB: Q5HZA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254558   ⟸   XM_006254496
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254561   ⟸   XM_006254499
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006254562   ⟸   XM_006254500
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006254564   ⟸   XM_006254502
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006254563   ⟸   XM_006254501
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006254559   ⟸   XM_006254497
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006254565   ⟸   XM_006254503
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006254566   ⟸   XM_006254504
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_008770236   ⟸   XM_008772014
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017456319   ⟸   XM_017600830
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017456320   ⟸   XM_017600831
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_017456321   ⟸   XM_017600832
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: ENSRNOP00000017573   ⟸   ENSRNOT00000017573
RefSeq Acc Id: ENSRNOP00000042320   ⟸   ENSRNOT00000042287
RefSeq Acc Id: ENSRNOP00000040191   ⟸   ENSRNOT00000049898
RefSeq Acc Id: XP_038952479   ⟸   XM_039096551
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038952482   ⟸   XM_039096554
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038952478   ⟸   XM_039096550
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952480   ⟸   XM_039096552
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038952484   ⟸   XM_039096556
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038952483   ⟸   XM_039096555
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038952481   ⟸   XM_039096553
- Peptide Label: isoform X12
Protein Domains
BAR   SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700688
Promoter ID:EPDNEW_R11209
Type:initiation region
Name:Bin1_1
Description:bridging integrator 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01825,163,592 - 25,163,652EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621786 AgrOrtholog
BIND 130568
  130569
  130570
Ensembl Genes ENSRNOG00000012852 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017573 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000040191 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000042320 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017573 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000042287 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000049898 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7311357 IMAGE-MGC_LOAD
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Amphiphysin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Amphiphysin-2_SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Amphiphysin_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BAR_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:117028 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105358 IMAGE-MGC_LOAD
NCBI Gene 117028 ENTREZGENE
PANTHER PTHR46514:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bin1 PhenoGen
PRINTS AMPHIPHYSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AMPHIPHYSIN2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt BIN1_RAT UniProtKB/Swiss-Prot
  D4A4P1_RAT UniProtKB/TrEMBL
  F1LMX1_RAT UniProtKB/TrEMBL
  O08839 ENTREZGENE
  Q5HZA7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D4ACI3 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-01-20 Bin1  bridging integrator 1    myc box dependent interacting protein 1  Name updated 1299863 APPROVED
2002-08-07 Bin1  myc box dependent interacting protein 1      Symbol and Name status set to provisional 70820 PROVISIONAL