Dtna (dystrobrevin, alpha) - Rat Genome Database

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Gene: Dtna (dystrobrevin, alpha) Rattus norvegicus
Analyze
Symbol: Dtna
Name: dystrobrevin, alpha
RGD ID: 1561985
Description: Enables PDZ domain binding activity and phosphatase binding activity. Predicted to be involved in synaptic signaling. Located in axon; cytoplasm; and sarcolemma. Is extrinsic component of cytoplasmic side of plasma membrane. Human ortholog(s) of this gene implicated in cardiomyopathy and left ventricular noncompaction. Orthologous to human DTNA (dystrobrevin alpha); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Dtna-ps1; dystrobrevin alpha; dystrobrevin alpha, pseudogene 1; LOC307548; RGD1561985; similar to dystrobrevin alpha isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21814,687,193 - 14,944,232 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1814,587,852 - 14,944,261 (+)Ensembl
Rnor_6.01814,544,725 - 14,671,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1814,471,213 - 14,657,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01814,340,984 - 14,465,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41815,024,302 - 15,571,410 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1814,647,976 - 14,904,179 (+)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Association of dystrobrevin and regulatory subunit of protein kinase A: a new role for dystrobrevin as a scaffold for signaling proteins. Ceccarini M, etal., J Mol Biol. 2007 Aug 31;371(5):1174-87. doi: 10.1016/j.jmb.2007.06.019. Epub 2007 Jun 14.
2. WW and EF hand domains of dystrophin-family proteins mediate dystroglycan binding. Chung W and Campanelli JT, Mol Cell Biol Res Commun. 1999 Sep-Dec;2(3):162-71.
3. Characterization of the intermolecular associations of the dystrophin-associated glycoprotein complex in retinal Muller glial cells. Claudepierre T, etal., J Cell Sci. 2000 Oct;113 Pt 19:3409-17.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. The expression of alpha-dystrobrevin and dystrophin during skeletal muscle regeneration. Hoshino S, etal., J Muscle Res Cell Motil. 2002;23(2):131-8.
6. Novel gene mutations in patients with left ventricular noncompaction or Barth syndrome. Ichida F, etal., Circulation. 2001 Mar 6;103(9):1256-63.
7. MLC1 trafficking and membrane expression in astrocytes: role of caveolin-1 and phosphorylation. Lanciotti A, etal., Neurobiol Dis. 2010 Mar;37(3):581-95. Epub 2009 Nov 26.
8. Protein trafficking and anchoring complexes revealed by proteomic analysis of inward rectifier potassium channel (Kir2.x)-associated proteins. Leonoudakis D, etal., J Biol Chem. 2004 May 21;279(21):22331-46. Epub 2004 Mar 15.
9. Expression of the skeletal muscle dystrophin-dystroglycan complex and syntrophin-nitric oxide synthase complex is severely affected in the type 2 diabetic Goto-Kakizaki rat. Mulvey C, etal., Eur J Cell Biol. 2005 Nov;84(11):867-83.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Dystrobrevin localization in photoreceptor axon terminals and at blood-ocular barrier sites. Ueda H, etal., Invest Ophthalmol Vis Sci. 2000 Nov;41(12):3908-14.
15. Immunolocalization of dystrobrevin in the astrocytic endfeet and endothelial cells in the rat cerebellum. Ueda H, etal., Neurosci Lett. 2000 Apr 7;283(2):121-4.
Additional References at PubMed
PMID:10545507   PMID:10995443   PMID:16448387   PMID:17728463   PMID:18468998   PMID:25931508  


Genomics

Comparative Map Data
Dtna
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21814,687,193 - 14,944,232 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1814,587,852 - 14,944,261 (+)Ensembl
Rnor_6.01814,544,725 - 14,671,514 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1814,471,213 - 14,657,332 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01814,340,984 - 14,465,694 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41815,024,302 - 15,571,410 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1814,647,976 - 14,904,179 (+)NCBICelera
Cytogenetic Map18p12NCBI
DTNA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381834,493,312 - 34,891,844 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1834,493,291 - 34,891,844 (+)EnsemblGRCh38hg38GRCh38
GRCh371832,073,276 - 32,471,808 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361830,327,279 - 30,725,364 (+)NCBINCBI36hg18NCBI36
Build 341830,652,329 - 30,701,367NCBI
Celera1828,881,475 - 29,280,096 (+)NCBI
Cytogenetic Map18q12.1NCBI
HuRef1828,932,326 - 29,330,662 (+)NCBIHuRef
CHM1_11832,000,280 - 32,398,881 (+)NCBICHM1_1
T2T-CHM13v2.01834,685,119 - 35,083,714 (+)NCBI
Dtna
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391823,443,063 - 23,792,776 (+)NCBIGRCm39mm39
GRCm39 Ensembl1823,548,192 - 23,792,772 (+)Ensembl
GRCm381823,310,006 - 23,659,719 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1823,415,135 - 23,659,715 (+)EnsemblGRCm38mm10GRCm38
MGSCv371823,573,916 - 23,818,215 (+)NCBIGRCm37mm9NCBIm37
MGSCv361823,558,452 - 23,802,724 (+)NCBImm8
Celera1823,912,218 - 24,156,253 (+)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1812.08NCBI
Dtna
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540221,315,889 - 21,673,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540221,414,122 - 21,676,389 (+)NCBIChiLan1.0ChiLan1.0
DTNA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11831,297,078 - 31,705,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1831,524,255 - 31,705,386 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01827,706,576 - 28,116,328 (+)NCBIMhudiblu_PPA_v0panPan3
DTNA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1755,068,555 - 55,420,377 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl755,069,462 - 55,420,259 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha754,502,369 - 54,853,974 (-)NCBI
ROS_Cfam_1.0755,037,996 - 55,388,952 (-)NCBI
ROS_Cfam_1.0 Ensembl755,038,315 - 55,388,963 (-)Ensembl
UMICH_Zoey_3.1754,725,308 - 55,076,745 (-)NCBI
UNSW_CanFamBas_1.0754,746,134 - 55,097,281 (-)NCBI
UU_Cfam_GSD_1.0755,042,274 - 55,393,784 (-)NCBI
Dtna
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494450,778,360 - 51,092,758 (-)NCBI
SpeTri2.0NW_00493651710,105,767 - 10,357,672 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DTNA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6118,333,733 - 118,753,512 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16118,333,069 - 118,753,516 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26110,934,485 - 111,005,318 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DTNA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11845,855,444 - 46,253,842 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1845,856,403 - 45,991,102 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605020,360,871 - 20,753,258 (-)NCBIVero_WHO_p1.0
Dtna
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247798,948,499 - 9,329,550 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247798,948,578 - 9,329,459 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D18Rat148  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,908,003 - 14,908,139 (+)MAPPERmRatBN7.2
Rnor_6.01814,635,186 - 14,635,321NCBIRnor6.0
Rnor_5.01814,429,773 - 14,429,908UniSTSRnor5.0
RGSC_v3.41815,540,789 - 15,540,925RGDRGSC3.4
RGSC_v3.41815,540,790 - 15,540,925UniSTSRGSC3.4
RGSC_v3.11815,567,436 - 15,567,571RGD
Celera1814,868,052 - 14,868,187UniSTS
RH 3.4 Map18173.4RGD
RH 3.4 Map18173.4UniSTS
RH 2.0 Map18712.7RGD
SHRSP x BN Map184.19RGD
Cytogenetic Map18p12UniSTS
BF416056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,600,268 - 14,600,491 (+)MAPPERmRatBN7.2
Rnor_6.01814,316,736 - 14,316,958NCBIRnor6.0
Rnor_5.01814,105,980 - 14,106,202UniSTSRnor5.0
RGSC_v3.41815,036,654 - 15,036,876UniSTSRGSC3.4
Celera1814,561,293 - 14,561,515UniSTS
RH 3.4 Map18153.11UniSTS
Cytogenetic Map18p12UniSTS
Dtna  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,943,943 - 14,944,155 (+)MAPPERmRatBN7.2
mRatBN7.21814,943,943 - 14,944,336 (+)MAPPERmRatBN7.2
Rnor_6.01814,671,226 - 14,671,437NCBIRnor6.0
Rnor_6.01814,671,226 - 14,671,669NCBIRnor6.0
Rnor_5.01814,465,409 - 14,465,852UniSTSRnor5.0
Rnor_5.01814,465,409 - 14,465,620UniSTSRnor5.0
RGSC_v3.41815,577,516 - 15,577,727UniSTSRGSC3.4
Celera1814,903,891 - 14,904,102UniSTS
Cytogenetic Map18p12UniSTS
RH132038  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,889,499 - 14,890,989 (+)MAPPERmRatBN7.2
Rnor_6.01814,616,682 - 14,618,171NCBIRnor6.0
Rnor_5.01814,411,269 - 14,412,758UniSTSRnor5.0
RGSC_v3.41815,522,286 - 15,523,775UniSTSRGSC3.4
Celera1814,849,548 - 14,851,037UniSTS
RH 3.4 Map18172.9UniSTS
Cytogenetic Map18p12UniSTS
RH142852  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,918,812 - 14,918,932 (+)MAPPERmRatBN7.2
Rnor_6.01814,645,995 - 14,646,114NCBIRnor6.0
Rnor_5.01814,440,582 - 14,440,701UniSTSRnor5.0
RGSC_v3.41815,551,599 - 15,551,718UniSTSRGSC3.4
Celera1814,878,861 - 14,878,980UniSTS
RH 3.4 Map18173.4UniSTS
Cytogenetic Map18p12UniSTS
BE096939  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,943,651 - 14,943,828 (+)MAPPERmRatBN7.2
Rnor_6.01814,670,934 - 14,671,110NCBIRnor6.0
Rnor_5.01814,465,117 - 14,465,293UniSTSRnor5.0
RGSC_v3.41815,577,224 - 15,577,400UniSTSRGSC3.4
Celera1814,903,599 - 14,903,775UniSTS
RH 3.4 Map18174.0UniSTS
Cytogenetic Map18p12UniSTS
RH137649  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,920,384 - 14,920,526 (+)MAPPERmRatBN7.2
Rnor_6.01814,647,567 - 14,647,708NCBIRnor6.0
Rnor_5.01814,442,154 - 14,442,295UniSTSRnor5.0
RGSC_v3.41815,553,171 - 15,553,312UniSTSRGSC3.4
Celera1814,880,433 - 14,880,574UniSTS
RH 3.4 Map18172.0UniSTS
Cytogenetic Map18p12UniSTS
BE119476  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,799,452 - 14,799,617 (+)MAPPERmRatBN7.2
Rnor_6.01814,523,940 - 14,524,104NCBIRnor6.0
Rnor_5.01814,319,640 - 14,319,804UniSTSRnor5.0
RGSC_v3.41815,431,404 - 15,431,568UniSTSRGSC3.4
Celera1814,754,727 - 14,754,891UniSTS
RH 3.4 Map18172.7UniSTS
Cytogenetic Map18p12UniSTS
AI228002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,940,879 - 14,941,029 (+)MAPPERmRatBN7.2
Rnor_6.01814,668,162 - 14,668,311NCBIRnor6.0
Rnor_5.01814,462,345 - 14,462,494UniSTSRnor5.0
RGSC_v3.41815,574,452 - 15,574,601UniSTSRGSC3.4
Celera1814,900,827 - 14,900,976UniSTS
RH 3.4 Map18174.0UniSTS
Cytogenetic Map18p12UniSTS
RH26327  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,920,334 - 14,920,497 (+)MAPPERmRatBN7.2
Rnor_6.01814,647,517 - 14,647,679NCBIRnor6.0
Rnor_5.01814,442,104 - 14,442,266UniSTSRnor5.0
RGSC_v3.41815,553,121 - 15,553,283UniSTSRGSC3.4
Celera1814,880,383 - 14,880,545UniSTS
Cytogenetic Map18p12UniSTS
UniSTS:257001  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21814,687,187 - 14,687,338 (+)MAPPERmRatBN7.2
Rnor_6.01814,409,712 - 14,409,862NCBIRnor6.0
Rnor_5.01814,200,093 - 14,200,243UniSTSRnor5.0
Celera1814,648,057 - 14,648,207UniSTS
Cytogenetic Map18p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:565
Count of miRNA genes:227
Interacting mature miRNAs:267
Transcripts:ENSRNOT00000033573, ENSRNOT00000040198, ENSRNOT00000045224, ENSRNOT00000045918, ENSRNOT00000050975, ENSRNOT00000072596, ENSRNOT00000074129
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 23 8 10 40 12 5 8
Low 3 20 13 1 10 1 1 34 35 25 6
Below cutoff 26 22 9 22 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006222516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000045224   ⟹   ENSRNOP00000042067
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1814,820,606 - 14,927,639 (+)Ensembl
Rnor_6.0 Ensembl1814,471,213 - 14,657,332 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097179   ⟹   ENSRNOP00000096468
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1814,687,108 - 14,944,261 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112648   ⟹   ENSRNOP00000080605
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1814,687,239 - 14,940,889 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114052   ⟹   ENSRNOP00000095584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1814,687,239 - 14,891,089 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118115   ⟹   ENSRNOP00000078266
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1814,587,852 - 14,918,457 (+)Ensembl
RefSeq Acc Id: XM_017601078   ⟹   XP_017456567
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,194 - 14,944,232 (+)NCBI
Rnor_6.01814,544,725 - 14,671,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601080   ⟹   XP_017456569
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,207 - 14,920,544 (+)NCBI
Rnor_6.01814,544,729 - 14,648,788 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601081   ⟹   XP_017456570
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,211 - 14,920,544 (+)NCBI
Rnor_6.01814,544,730 - 14,648,788 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601082   ⟹   XP_017456571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,213 - 14,891,093 (+)NCBI
Rnor_6.01814,544,729 - 14,618,275 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601083   ⟹   XP_017456572
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,217 - 14,891,094 (+)NCBI
Rnor_6.01814,544,730 - 14,618,276 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097217   ⟹   XP_038953145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,775,712 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097218   ⟹   XP_038953146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,195 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097219   ⟹   XP_038953147
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,193 - 14,943,240 (+)NCBI
RefSeq Acc Id: XM_039097220   ⟹   XP_038953148
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,197 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097221   ⟹   XP_038953149
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,196 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097222   ⟹   XP_038953150
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,193 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097223   ⟹   XP_038953151
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,197 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097224   ⟹   XP_038953152
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,194 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097225   ⟹   XP_038953153
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,201 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097226   ⟹   XP_038953154
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,204 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097227   ⟹   XP_038953155
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,204 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097228   ⟹   XP_038953156
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,202 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097229   ⟹   XP_038953157
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,198 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097230   ⟹   XP_038953158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,206 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097231   ⟹   XP_038953159
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,203 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097232   ⟹   XP_038953160
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,200 - 14,920,544 (+)NCBI
RefSeq Acc Id: XM_039097233   ⟹   XP_038953161
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,208 - 14,920,544 (+)NCBI
RefSeq Acc Id: XM_039097234   ⟹   XP_038953162
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,200 - 14,944,232 (+)NCBI
RefSeq Acc Id: XM_039097235   ⟹   XP_038953163
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,687,197 - 14,944,232 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_017456567   ⟸   XM_017601078
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456569   ⟸   XM_017601080
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_017456571   ⟸   XM_017601082
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_017456570   ⟸   XM_017601081
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017456572   ⟸   XM_017601083
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: ENSRNOP00000042067   ⟸   ENSRNOT00000045224
RefSeq Acc Id: XP_038953150   ⟸   XM_039097222
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038953147   ⟸   XM_039097219
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038953152   ⟸   XM_039097224
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038953146   ⟸   XM_039097218
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038953149   ⟸   XM_039097221
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038953151   ⟸   XM_039097223
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038953148   ⟸   XM_039097220
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038953163   ⟸   XM_039097235
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038953157   ⟸   XM_039097229
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038953162   ⟸   XM_039097234
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038953160   ⟸   XM_039097232
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038953153   ⟸   XM_039097225
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038953156   ⟸   XM_039097228
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038953159   ⟸   XM_039097231
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038953155   ⟸   XM_039097227
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038953154   ⟸   XM_039097226
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038953158   ⟸   XM_039097230
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038953161   ⟸   XM_039097233
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038953145   ⟸   XM_039097217
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000078266   ⟸   ENSRNOT00000118115
RefSeq Acc Id: ENSRNOP00000096468   ⟸   ENSRNOT00000097179
RefSeq Acc Id: ENSRNOP00000080605   ⟸   ENSRNOT00000112648
RefSeq Acc Id: ENSRNOP00000095584   ⟸   ENSRNOT00000114052
Protein Domains
ZZ-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A772-F1-model_v2 AlphaFold D4A772 1-626 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561985 AgrOrtholog
BioCyc Gene G2FUF-8180 BioCyc
Ensembl Genes ENSRNOG00000016671 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000042067.5 UniProtKB/TrEMBL
  ENSRNOP00000078266 ENTREZGENE
  ENSRNOP00000078266.1 UniProtKB/TrEMBL
  ENSRNOP00000080605 ENTREZGENE
  ENSRNOP00000080605.1 UniProtKB/TrEMBL
  ENSRNOP00000095584 ENTREZGENE
  ENSRNOP00000095584.1 UniProtKB/TrEMBL
  ENSRNOP00000096468 ENTREZGENE
  ENSRNOP00000096468.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045224.7 UniProtKB/TrEMBL
  ENSRNOT00000097179 ENTREZGENE
  ENSRNOT00000097179.1 UniProtKB/TrEMBL
  ENSRNOT00000112648 ENTREZGENE
  ENSRNOT00000112648.1 UniProtKB/TrEMBL
  ENSRNOT00000114052 ENTREZGENE
  ENSRNOT00000114052.1 UniProtKB/TrEMBL
  ENSRNOT00000118115 ENTREZGENE
  ENSRNOT00000118115.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.60.90 UniProtKB/TrEMBL
InterPro Distrobrevin UniProtKB/TrEMBL
  EF-hand-like_dom UniProtKB/TrEMBL
  EF-hand_dom_typ1 UniProtKB/TrEMBL
  EF-hand_dom_typ2 UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/TrEMBL
NCBI Gene 307548 ENTREZGENE
Pfam efhand_1 UniProtKB/TrEMBL
  efhand_2 UniProtKB/TrEMBL
  PF00569 UniProtKB/TrEMBL
PhenoGen Dtna PhenoGen
PIRSF Distrobrevin UniProtKB/TrEMBL
PROSITE ZF_ZZ_1 UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/TrEMBL
SMART ZnF_ZZ UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8I5ZKV1_RAT UniProtKB/TrEMBL
  A0A8I5ZQM2_RAT UniProtKB/TrEMBL
  A0A8I6APF7_RAT UniProtKB/TrEMBL
  A0A8I6AQU5_RAT UniProtKB/TrEMBL
  D4A772_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-03-06 Dtna  dystrobrevin, alpha  Dtna-ps1  dystrobrevin alpha, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Dtna-ps1  dystrobrevin alpha, pseudogene 1  Dtna  dystrobrevin alpha  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dtna  dystrobrevin alpha   Dtna_predicted  dystrobrevin alpha (predicted)  'predicted' is removed 2292626 APPROVED
2006-08-31 Dtna_predicted  dystrobrevin alpha (predicted)  RGD1561985_predicted  similar to dystrobrevin alpha isoform 1 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561985_predicted  similar to dystrobrevin alpha isoform 1 (predicted)  LOC307548  similar to dystrobrevin alpha isoform 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC307548  similar to dystrobrevin alpha isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL