LOC120098431 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120098431 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120098431
Name: U6 spliceosomal RNA
RGD ID: 41219354
Description:
Type: snrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81812,958,175 - 12,958,277 (-)NCBIGRCr8
mRatBN7.21812,683,262 - 12,683,364 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1812,683,262 - 12,683,364 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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Variants in LOC120098431
1 total Variants

1 to 10 of 29 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
70178EaezExperimental allergic encephalomyelitis QTL z2.4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)181235778612874620Rat

1 to 10 of 29 rows





RefSeq Transcripts XR_005496592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000086727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1812,683,262 - 12,683,364 (-)Ensembl
RefSeq Acc Id: XR_005496592
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81812,958,175 - 12,958,277 (-)NCBI
mRatBN7.21812,683,262 - 12,683,364 (-)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-8198 BioCyc
Ensembl Genes ENSRNOG00000064492 Ensembl
NCBI Gene LOC120098431 ENTREZGENE
PhenoGen LOC120098431 PhenoGen
RatGTEx ENSRNOG00000064492 RatGTEx
RNAcentral URS00006F9B6F RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120098431  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL