Ube2d2 (ubiquitin-conjugating enzyme E2D 2) - Rat Genome Database

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Gene: Ube2d2 (ubiquitin-conjugating enzyme E2D 2) Rattus norvegicus
Analyze
Symbol: Ube2d2
Name: ubiquitin-conjugating enzyme E2D 2
RGD ID: 1591897
Description: Enables ubiquitin-protein transferase activity. Predicted to be involved in protein K48-linked ubiquitination; protein autoubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of protein-containing complex. Predicted to be active in nucleus. Orthologous to human UBE2D2 (ubiquitin conjugating enzyme E2 D2); PARTICIPATES IN ubiquitin/proteasome degradation pathway; Endoplasmic Reticulum-associated degradation pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: (E3-independent) E2 ubiquitin-conjugating enzyme D2; E2 ubiquitin-conjugating enzyme D2; E2(17)KB 2; E217kB; Ubc2e; ubc2e ubiquitin conjugating enzyme; ubiquitin carrier protein D2; ubiquitin-conjugating enzyme E2 D2; ubiquitin-conjugating enzyme E2(17)KB 2; ubiquitin-conjugating enzyme E2-17 kDa 2; ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); ubiquitin-protein ligase D2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,638,399 - 27,680,386 (+)NCBIGRCr8
mRatBN7.21827,364,325 - 27,406,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1827,364,303 - 27,406,181 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1827,491,743 - 27,533,729 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01828,253,786 - 28,295,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01827,588,662 - 27,630,661 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01828,561,957 - 28,603,335 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1828,594,892 - 28,603,335 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01828,273,644 - 28,315,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41828,426,503 - 28,434,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1827,096,239 - 27,136,838 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1,3-dinitrobenzene  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
amiodarone  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
biochanin A  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP)
cadmium atom  (EXP,ISO)
caffeine  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
cannabidiol  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
delta-tocotrienol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (EXP)
disodium selenite  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
gonadorelin  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
N-nitrosodiethylamine  (EXP)
nicotine  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenytoin  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
quercetin  (ISO)
rotenone  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
titanium dioxide  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
uranium atom  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Members of the E2D (UbcH5) family mediate the ubiquitination of the conserved cysteine of Pex5p, the peroxisomal import receptor. Grou CP, etal., J Biol Chem. 2008 May 23;283(21):14190-7. doi: 10.1074/jbc.M800402200. Epub 2008 Mar 22.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. A novel rat homolog of the Saccharomyces cerevisiae ubiquitin-conjugating enzymes UBC4 and UBC5 with distinct biochemical features is induced during spermatogenesis. Wing SS, etal., Mol Cell Biol 1996 Aug;16(8):4064-72.
Additional References at PubMed
PMID:7826319   PMID:9990509   PMID:14593114   PMID:15247280   PMID:18703417   PMID:20061386   PMID:21068390   PMID:22797923   PMID:23509263   PMID:23533145   PMID:25931508   PMID:27378730  


Genomics

Comparative Map Data
Ube2d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,638,399 - 27,680,386 (+)NCBIGRCr8
mRatBN7.21827,364,325 - 27,406,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1827,364,303 - 27,406,181 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1827,491,743 - 27,533,729 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01828,253,786 - 28,295,779 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01827,588,662 - 27,630,661 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01828,561,957 - 28,603,335 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1828,594,892 - 28,603,335 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01828,273,644 - 28,315,393 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41828,426,503 - 28,434,785 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1827,096,239 - 27,136,838 (+)NCBICelera
Cytogenetic Map18p11NCBI
UBE2D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385139,526,240 - 139,628,434 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5139,526,431 - 139,628,434 (+)EnsemblGRCh38hg38GRCh38
GRCh375138,940,924 - 139,008,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365138,920,935 - 138,988,203 (+)NCBINCBI36Build 36hg18NCBI36
Build 345138,920,934 - 138,988,200NCBI
Celera5135,015,760 - 135,083,018 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5134,083,642 - 134,151,382 (+)NCBIHuRef
CHM1_15138,373,349 - 138,440,624 (+)NCBICHM1_1
T2T-CHM13v2.05140,086,420 - 140,153,498 (+)NCBIT2T-CHM13v2.0
Ube2d2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,904,612 - 35,940,225 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,904,611 - 35,942,547 (+)EnsemblGRCm39 Ensembl
GRCm381835,771,559 - 35,807,172 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,771,558 - 35,809,494 (+)EnsemblGRCm38mm10GRCm38
MGSCv371835,931,213 - 35,966,826 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361835,897,581 - 35,933,137 (+)NCBIMGSCv36mm8
Celera1836,227,229 - 36,263,010 (+)NCBICelera
Cytogenetic Map18B2NCBI
cM Map1819.24NCBI
Ube2d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955418989,802 - 1,006,262 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955418990,124 - 1,043,544 (-)NCBIChiLan1.0ChiLan1.0
UBE2D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,821,488 - 134,889,981 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,961,832 - 133,030,281 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,927,150 - 134,995,298 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15141,048,385 - 141,115,842 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5141,048,385 - 141,115,842 (+)Ensemblpanpan1.1panPan2
UBE2D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1234,827,994 - 34,884,047 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl234,827,888 - 34,897,412 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha231,929,861 - 31,985,986 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0235,281,731 - 35,338,066 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl235,281,967 - 35,338,066 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1232,334,131 - 32,390,460 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0233,200,956 - 33,257,076 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0233,952,551 - 34,008,349 (+)NCBIUU_Cfam_GSD_1.0
Ube2d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213152,925,200 - 152,993,263 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365318,630,516 - 8,684,686 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365318,668,954 - 8,686,305 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2141,398,065 - 141,459,817 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12141,397,937 - 141,459,821 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22147,425,441 - 147,445,013 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12342,219,650 - 42,280,931 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2342,220,683 - 42,279,298 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603435,605,912 - 35,667,810 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ube2d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474332,338,821 - 32,425,478 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474332,338,864 - 32,426,220 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ube2d2
208 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:69
Count of miRNA genes:59
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000067702
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat

Markers in Region
PMC166143P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,820,385 - 62,820,485 (+)MAPPERmRatBN7.2
mRatBN7.2141,916,947 - 1,917,047 (+)MAPPERmRatBN7.2
Rnor_6.01165,717,122 - 65,717,221NCBIRnor6.0
Rnor_6.0142,934,046 - 2,934,145NCBIRnor6.0
Rnor_5.0142,934,447 - 2,934,546UniSTSRnor5.0
Rnor_5.01168,811,340 - 68,811,439UniSTSRnor5.0
Celera1162,318,530 - 62,318,629UniSTS
Celera141,936,503 - 1,936,602UniSTS
Cytogenetic Map18p11UniSTS
Cytogenetic Map14p22UniSTS
RH137016  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21162,819,519 - 62,819,714 (+)MAPPERmRatBN7.2
mRatBN7.21827,405,300 - 27,405,492 (+)MAPPERmRatBN7.2
Rnor_6.01828,603,047 - 28,603,238NCBIRnor6.0
Rnor_6.01165,716,256 - 65,716,450NCBIRnor6.0
Rnor_5.01828,315,105 - 28,315,296UniSTSRnor5.0
Rnor_5.01168,810,474 - 68,810,668UniSTSRnor5.0
RGSC_v3.41164,603,058 - 64,603,252UniSTSRGSC3.4
RGSC_v3.41828,434,497 - 28,434,688UniSTSRGSC3.4
Celera1827,136,550 - 27,136,741UniSTS
Celera1162,317,664 - 62,317,858UniSTS
Cytogenetic Map18p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000067702   ⟹   ENSRNOP00000059655
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1828,594,892 - 28,603,335 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095794   ⟹   ENSRNOP00000088484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1827,364,303 - 27,406,181 (+)Ensembl
RefSeq Acc Id: NM_001393772   ⟹   NP_001380701
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81827,638,399 - 27,680,386 (+)NCBI
mRatBN7.21827,364,325 - 27,406,322 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001380701 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA85101 (Get FASTA)   NCBI Sequence Viewer  
  EDL76278 (Get FASTA)   NCBI Sequence Viewer  
  EDL76279 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000088484
  ENSRNOP00000088484.1
GenBank Protein P62839 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000059655   ⟸   ENSRNOT00000067702
Ensembl Acc Id: ENSRNOP00000088484   ⟸   ENSRNOT00000095794
RefSeq Acc Id: NP_001380701   ⟸   NM_001393772
- UniProtKB: P62839 (UniProtKB/Swiss-Prot),   A6J2Z6 (UniProtKB/TrEMBL),   A0A0G2K739 (UniProtKB/TrEMBL)
Protein Domains
UBC core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62839-F1-model_v2 AlphaFold P62839 1-147 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591897 AgrOrtholog
BioCyc Gene G2FUF-7891 BioCyc
BioCyc Pathway PWY-7511 [protein ubiquitination] BioCyc
BioCyc Pathway Image PWY-7511 BioCyc
Ensembl Genes ENSRNOG00000042523 Ensembl
  ENSRNOG00000069286 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000095794 ENTREZGENE
  ENSRNOT00000095794.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot
InterPro UBQ-conjugat_E2 UniProtKB/Swiss-Prot
  UBQ-conjugating_AS UniProtKB/Swiss-Prot
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot
NCBI Gene 641452 ENTREZGENE
PANTHER UBIQUITIN-CONJUGATING ENZYME E2 UniProtKB/Swiss-Prot
Pfam UQ_con UniProtKB/Swiss-Prot
PhenoGen Ube2d2 PhenoGen
PROSITE UBIQUITIN_CONJUGAT_1 UniProtKB/Swiss-Prot
  UBIQUITIN_CONJUGAT_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000013741 RatGTEx
  ENSRNOG00000042523 RatGTEx
  ENSRNOG00000069286 RatGTEx
SMART UBCc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot
UniProt A0A0G2K739 ENTREZGENE, UniProtKB/TrEMBL
  A6J2Z6 ENTREZGENE, UniProtKB/TrEMBL
  P62839 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P51669 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Ube2d2  ubiquitin-conjugating enzyme E2D 2  Ube2d2  ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-25 Ube2d2  ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)  Ube2d2  ubiquitin-conjugating enzyme E2D 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2007-02-20 Ube2d2  ubiquitin-conjugating enzyme E2D 2  Ubc2e  ubc2e ubiquitin conjugating enzyme  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 PROVISIONAL