Zmat2 (zinc finger, matrin type 2) - Rat Genome Database

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Gene: Zmat2 (zinc finger, matrin type 2) Rattus norvegicus
Analyze
Symbol: Zmat2
Name: zinc finger, matrin type 2
RGD ID: 1583592
Description: Predicted to enable several functions, including ATP binding activity; histidine-tRNA ligase activity; and zinc ion binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome and U4/U6 x U5 tri-snRNP complex. Orthologous to human ZMAT2 (zinc finger matrin-type 2); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; N-nitrosodiethylamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC679898; similar to zinc finger, matrin type 2; zinc finger matrin-type protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21828,409,606 - 28,414,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,398,795 - 28,414,747 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,536,739 - 28,541,374 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01829,298,815 - 29,303,450 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01828,634,043 - 28,638,678 (+)NCBIRnor_WKY
Rnor_6.01829,639,991 - 29,644,626 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,639,872 - 29,644,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,343,457 - 29,348,092 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,493,269 - 29,497,904 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1828,130,152 - 28,134,786 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:28781166   PMID:32005145  


Genomics

Comparative Map Data
Zmat2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21828,409,606 - 28,414,241 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1828,398,795 - 28,414,747 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1828,536,739 - 28,541,374 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01829,298,815 - 29,303,450 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01828,634,043 - 28,638,678 (+)NCBIRnor_WKY
Rnor_6.01829,639,991 - 29,644,626 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1829,639,872 - 29,644,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01829,343,457 - 29,348,092 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41829,493,269 - 29,497,904 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1828,130,152 - 28,134,786 (+)NCBICelera
Cytogenetic Map18p11NCBI
ZMAT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385140,700,447 - 140,706,686 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl5140,698,680 - 140,706,686 (+)EnsemblGRCh38hg38GRCh38
GRCh375140,080,032 - 140,086,271 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365140,060,216 - 140,066,423 (+)NCBINCBI36Build 36hg18NCBI36
Build 345140,060,215 - 140,066,423NCBI
Celera5136,156,780 - 136,162,987 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5135,225,283 - 135,231,489 (+)NCBIHuRef
CHM1_15139,513,287 - 139,519,494 (+)NCBICHM1_1
T2T-CHM13v2.05141,225,840 - 141,232,080 (+)NCBIT2T-CHM13v2.0
Zmat2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391836,926,976 - 36,932,713 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1836,926,929 - 36,932,719 (+)EnsemblGRCm39 Ensembl
GRCm381836,793,923 - 36,799,660 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1836,793,876 - 36,799,666 (+)EnsemblGRCm38mm10GRCm38
MGSCv371836,953,577 - 36,959,314 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361836,919,897 - 36,925,634 (+)NCBIMGSCv36mm8
Celera1837,245,957 - 37,251,695 (+)NCBICelera
Cytogenetic Map18B2NCBI
Zmat2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,633 - 10,844 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554184,335 - 10,844 (-)NCBIChiLan1.0ChiLan1.0
ZMAT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15142,180,981 - 142,187,294 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5142,180,981 - 142,187,292 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05136,065,016 - 136,071,333 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
ZMAT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1235,851,972 - 35,860,818 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl235,852,109 - 35,858,065 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha232,891,058 - 32,899,813 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0236,307,705 - 36,316,471 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,307,742 - 36,316,471 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1233,359,792 - 33,368,549 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,227,918 - 34,236,665 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0234,980,511 - 34,989,269 (+)NCBIUU_Cfam_GSD_1.0
Zmat2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213151,971,143 - 151,978,212 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365319,633,460 - 9,640,366 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMAT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2142,411,089 - 142,419,137 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12142,410,970 - 142,417,012 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22148,355,582 - 148,361,604 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZMAT2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12343,333,078 - 43,340,082 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2343,333,164 - 43,339,163 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603434,516,814 - 34,523,942 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zmat2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474333,444,432 - 33,451,490 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH131148  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,407,852 - 28,408,035 (+)MAPPERmRatBN7.2
Rnor_6.01829,638,238 - 29,638,420NCBIRnor6.0
Rnor_5.01829,341,704 - 29,341,886UniSTSRnor5.0
RGSC_v3.41829,491,516 - 29,491,698UniSTSRGSC3.4
Celera1828,128,399 - 28,128,581UniSTS
Cytogenetic Map18p11UniSTS
RH132656  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,413,866 - 28,414,085 (+)MAPPERmRatBN7.2
Rnor_6.01829,644,252 - 29,644,470NCBIRnor6.0
Rnor_5.01829,347,718 - 29,347,936UniSTSRnor5.0
RGSC_v3.41829,497,530 - 29,497,748UniSTSRGSC3.4
Celera1828,134,412 - 28,134,630UniSTS
RH 3.4 Map18419.2UniSTS
Cytogenetic Map18p11UniSTS
UniSTS:237786  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21828,413,146 - 28,413,271 (+)MAPPERmRatBN7.2
Rnor_6.01829,643,532 - 29,643,656NCBIRnor6.0
Rnor_5.01829,346,998 - 29,347,122UniSTSRnor5.0
RGSC_v3.41829,496,810 - 29,496,934UniSTSRGSC3.4
Cytogenetic Map18p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:204
Count of miRNA genes:146
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000021516
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 37 57 41 19 41 8 11 74 35 41 11 8
Low 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021516   ⟹   ENSRNOP00000021516
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,409,600 - 28,414,747 (+)Ensembl
Rnor_6.0 Ensembl1829,639,872 - 29,644,652 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000021797   ⟹   ENSRNOP00000021797
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,398,817 - 28,408,062 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095646   ⟹   ENSRNOP00000078926
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,398,817 - 28,408,062 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097043   ⟹   ENSRNOP00000085580
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,401,158 - 28,408,075 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104252   ⟹   ENSRNOP00000090091
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,398,811 - 28,413,484 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112291   ⟹   ENSRNOP00000085665
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1828,398,795 - 28,407,560 (+)Ensembl
RefSeq Acc Id: NM_001135582   ⟹   NP_001129054
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21828,409,606 - 28,414,241 (+)NCBI
Rnor_6.01829,639,991 - 29,644,626 (+)NCBI
Rnor_5.01829,343,457 - 29,348,092 (+)NCBI
RGSC_v3.41829,493,269 - 29,497,904 (+)RGD
Celera1828,130,152 - 28,134,786 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001129054 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL76323 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001129054   ⟸   NM_001135582
- UniProtKB: D4AD01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000021516   ⟸   ENSRNOT00000021516
RefSeq Acc Id: ENSRNOP00000085665   ⟸   ENSRNOT00000112291
RefSeq Acc Id: ENSRNOP00000078926   ⟸   ENSRNOT00000095646
RefSeq Acc Id: ENSRNOP00000021797   ⟸   ENSRNOT00000021797
RefSeq Acc Id: ENSRNOP00000085580   ⟸   ENSRNOT00000097043
RefSeq Acc Id: ENSRNOP00000090091   ⟸   ENSRNOT00000104252
Protein Domains
AA_TRNA_LIGASE_II   U1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AD01-F1-model_v2 AlphaFold D4AD01 1-199 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700732
Promoter ID:EPDNEW_R11256
Type:multiple initiation site
Name:Zmat2_1
Description:zinc finger, matrin type 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01829,639,977 - 29,640,037EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1583592 AgrOrtholog
BioCyc Gene G2FUF-7854 BioCyc
Ensembl Genes ENSRNOG00000016016 Ensembl
  ENSRNOG00000016087 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021516 ENTREZGENE
  ENSRNOP00000021516.4 UniProtKB/TrEMBL
  ENSRNOP00000078926.1 UniProtKB/TrEMBL
  ENSRNOP00000085580.1 UniProtKB/TrEMBL
  ENSRNOP00000085665.1 UniProtKB/TrEMBL
  ENSRNOP00000090091.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021516 ENTREZGENE
  ENSRNOT00000021516.8 UniProtKB/TrEMBL
  ENSRNOT00000095646.1 UniProtKB/TrEMBL
  ENSRNOT00000097043.1 UniProtKB/TrEMBL
  ENSRNOT00000104252.1 UniProtKB/TrEMBL
  ENSRNOT00000112291.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.930.10 UniProtKB/TrEMBL
  3.40.50.800 UniProtKB/TrEMBL
InterPro aa-tRNA-synth_II UniProtKB/TrEMBL
  aa-tRNA-synth_II/BPL/LPL UniProtKB/TrEMBL
  Anticodon-bd UniProtKB/TrEMBL
  Anticodon-bd_dom_sf UniProtKB/TrEMBL
  His-tRNA-ligase UniProtKB/TrEMBL
  HisRS-like_core UniProtKB/TrEMBL
  HisRS/HisZ UniProtKB/TrEMBL
  HisRS_anticodon UniProtKB/TrEMBL
  Snu23 UniProtKB/TrEMBL
  Znf_C2H2_jaz UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_U1 UniProtKB/TrEMBL
KEGG Report rno:679898 UniProtKB/TrEMBL
NCBI Gene 679898 ENTREZGENE
PANTHER PTHR45986 UniProtKB/TrEMBL
Pfam HGTP_anticodon UniProtKB/TrEMBL
  tRNA-synt_His UniProtKB/TrEMBL
  zf-C2H2_jaz UniProtKB/TrEMBL
PhenoGen Zmat2 PhenoGen
PIRSF His-tRNA_synth UniProtKB/TrEMBL
PROSITE AA_TRNA_LIGASE_II UniProtKB/TrEMBL
SMART ZnF_U1 UniProtKB/TrEMBL
Superfamily-SCOP SSF55681 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
TIGRFAMs hisS UniProtKB/TrEMBL
UniProt A0A8I5ZM00_RAT UniProtKB/TrEMBL
  A0A8I6A401_RAT UniProtKB/TrEMBL
  A0A8I6AB48_RAT UniProtKB/TrEMBL
  A0A8I6GD20_RAT UniProtKB/TrEMBL
  D4AD01 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Zmat2  zinc finger, matrin type 2  LOC683048  similar to zinc finger, matrin type 2  Data Merged 1643240 APPROVED
2008-03-13 Zmat2  zinc finger, matrin type 2  LOC679898  similar to zinc finger, matrin type 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC683048  similar to zinc finger, matrin type 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679898  similar to zinc finger, matrin type 2      Symbol and Name status set to provisional 70820 PROVISIONAL