Lims2 (LIM zinc finger domain containing 2)

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Gene: Lims2 (LIM zinc finger domain containing 2) Rattus norvegicus

Analyze

Symbol:

Lims2

Name:

LIM zinc finger domain containing 2

RGD ID:

1305273

Description:

Predicted to have metal ion binding activity. Predicted to be involved in several processes, including cell-cell junction organization; negative regulation of cell population proliferation; and positive regulation of integrin-mediated signaling pathway. Predicted to localize to focal adhesion. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2W. Orthologous to human LIMS2 (LIM zinc finger domain containing 2); PARTICIPATES IN integrin mediated signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LIM and senescent cell antigen like domains 2; LIM and senescent cell antigen-like-containing domain protein 2; LIM-type zinc finger domains 2; LOC361303

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	23,553,813 - 23,592,137 (+)	NCBI
Rnor_6.0 Ensembl	18	24,708,115 - 24,746,159 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	18	24,707,951 - 24,746,159 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	18	24,422,274 - 24,460,482 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	24,347,374 - 24,386,082 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	18	24,374,019 - 24,412,728 (+)	NCBI
Celera	18	23,306,381 - 23,344,707 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive limb-girdle muscular dystrophy type 2W (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butanal (ISO)

carbon nanotube (ISO)

cisplatin (EXP,ISO)

cobalt dichloride (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

cumene (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diuron (EXP)

endosulfan (EXP)

ferric oxide (ISO)

folic acid (ISO)

lead diacetate (EXP)

mercury atom (ISO)

mercury(0) (ISO)

methamphetamine (ISO)

methapyrilene (EXP,ISO)

nefazodone (EXP)

ozone (ISO)

pentanal (ISO)

pirinixic acid (ISO)

propanal (ISO)

rotenone (EXP)

silicon dioxide (ISO)

succimer (ISO)

sulforaphane (ISO)

sunitinib (ISO)

tetrachloroethene (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

tremolite asbestos (ISO)

triclosan (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IBA,ISO)

cell-cell junction organization (IBA,ISO)

negative regulation of apoptotic process (ISO)

negative regulation of epithelial cell proliferation (ISO)

negative regulation of hepatocyte proliferation (ISO)

negative regulation of neural precursor cell proliferation (ISO)

positive regulation of integrin-mediated signaling pathway (IBA,ISO)

positive regulation of substrate adhesion-dependent cell spreading (IBA)

Cellular Component

cell-cell junction (IBA)

cytoplasm (IBA)

focal adhesion (IBA,ISO)

plasma membrane (IEA)

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

integrin mediated signaling pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Legate KR, etal., Nat Rev Mol Cell Biol. 2006 Jan;7(1):20-31.
3.	MGD data from the GO Consortium
4.	RGD automated data pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:12651156	PMID:19652092	PMID:21423176	PMID:24058607	PMID:24719101

Genomics

Comparative Map Data

Lims2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	23,553,813 - 23,592,137 (+)	NCBI
Rnor_6.0 Ensembl	18	24,708,115 - 24,746,159 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	18	24,707,951 - 24,746,159 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	18	24,422,274 - 24,460,482 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	24,347,374 - 24,386,082 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	18	24,374,019 - 24,412,728 (+)	NCBI
Celera	18	23,306,381 - 23,344,707 (+)	NCBI		Celera
Cytogenetic Map	18	p12	NCBI

LIMS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	127,638,381 - 127,681,786 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	127,638,421 - 127,681,786 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	128,396,001 - 128,439,360 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	128,112,471 - 128,138,590 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	2	128,112,232 - 128,138,343	NCBI
Celera	2	121,706,938 - 121,750,307 (-)	NCBI
Cytogenetic Map	2	q14.3	NCBI
HuRef	2	120,702,371 - 120,745,600 (-)	NCBI		HuRef
CHM1_1	2	128,400,424 - 128,443,742 (-)	NCBI		CHM1_1

Lims2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	32,055,346 - 32,091,673 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	18	32,055,343 - 32,091,672 (+)	Ensembl
GRCm38	18	31,922,293 - 31,958,620 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	31,922,290 - 31,958,619 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	32,091,161 - 32,118,273 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	18	32,074,517 - 32,101,629 (+)	NCBI			mm8
Celera	18	32,422,000 - 32,448,987 (+)	NCBI		Celera
Cytogenetic Map	18	B1	NCBI

Lims2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955459	2,864,580 - 2,914,263 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955459	2,874,282 - 2,913,956 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIMS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	2B	128,304,799 - 128,347,951 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	128,304,799 - 128,347,951 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	2B	32,594,330 - 32,637,697 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

LIMS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	19	22,931,779 - 22,982,765 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	19	22,932,251 - 22,978,437 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Lims2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936469	43,628,280 - 43,665,145 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIMS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	59,672,538 - 59,709,380 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	59,672,508 - 59,709,380 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	66,435,456 - 66,458,874 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIMS2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	2,540,383 - 2,578,117 (+)	NCBI
ChlSab1.1 Ensembl	10	2,543,091 - 2,579,332 (+)	Ensembl

Lims2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624732	14,102,543 - 14,144,479 (-)	NCBI

Position Markers

BE105871

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	18	24,725,199 - 24,725,355	NCBI	Rnor6.0
Rnor_5.0	18	24,439,522 - 24,439,678	UniSTS	Rnor5.0
RGSC_v3.4	18	24,365,122 - 24,365,278	UniSTS	RGSC3.4
Celera	18	23,323,749 - 23,323,905	UniSTS
RH 3.4 Map	18	301.5	UniSTS
Cytogenetic Map	18	p12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25999214	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25999214	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35097280	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	38195967	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	38195967	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	38753381	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	3719547	32487870	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4407513	62570466	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5430134	41781619	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14678852	59678852	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	15532963	32704022	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	15532963	32704022	Rat
1331781	Scl28	Serum cholesterol level QTL 28	3.995		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	18	15539427	25961165	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15539427	32670473	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	15539427	53861431	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	15539427	61499684	Rat
2301410	Bp317	Blood pressure QTL 317		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	15539551	27743236	Rat
12904690	Cm129	Cardiac mass QTL 129		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	15539551	27743236	Rat
12904689	Cm128	Cardiac mass QTL 128		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	15539551	27743236	Rat
12904693	Am20	Aortic mass QTL 20		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	15539551	27743236	Rat
12904695	Kidm73	Kidney mass QTL 73		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	15539551	27743236	Rat
12904691	Cm130	Cardiac mass QTL 130		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	15539551	27743236	Rat
12904680	Bw189	Body weight QTL 189		0.019	body mass (VT:0001259)	body weight (CMO:0000012)	18	15539551	27743236	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	15539671	29530300	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	15539671	61985648	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	15695872	68524999	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	15695872	87080053	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	15695872	87080053	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	19031030	68436105	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	19251717	32670473	Rat
1331735	Rf44	Renal function QTL 44	2.981		total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	19251717	32670473	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	20285758	87080053	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	21639491	66639491	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	22603736	87074531	Rat
6903353	Bp353	Blood pressure QTL 353	2.8		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	22604764	61985648	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	23184227	53861431	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	134
Count of miRNA genes:	99
Interacting mature miRNAs:	117
Transcripts:	ENSRNOT00000061054
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	25	22	21	11	21			3	19	5	11
Low		18	17	2	8	2	8	11	37	12	33		8
Below cutoff			18	18		18			32	4	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001012163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC112062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000061054 ⟹ ENSRNOP00000057770

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	24,708,115 - 24,746,159 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090923 ⟹ ENSRNOP00000075365

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	24,717,336 - 24,745,747 (+)	Ensembl

RefSeq Acc Id:

NM_001012163 ⟹ NP_001012163

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	23,553,937 - 23,592,137 (+)	NCBI
Rnor_6.0	18	24,708,115 - 24,746,159 (+)	NCBI
Rnor_5.0	18	24,422,274 - 24,460,482 (+)	NCBI
RGSC_v3.4	18	24,347,374 - 24,386,082 (+)	RGD
Celera	18	23,306,381 - 23,344,707 (+)	RGD

Sequence:

show sequence

GCTAGGAAGAGGTGAGGGTGCAGCTCAGCGTCTGGGAGCTGCGGTGGTGGGACATTCTGGTTAC
CGTGCAGTCTCTCTCTCTCCACGTGGCTGTGCCAAACAGGCTGGGCACCTGCTGTTGCCCCTGG
AGGAGCTACAGGCTGCCCTCAGGGAAGGAGGGCCCCAGGAAGTAAAGCATCGTCTCTGACACCA
AGCAACATGTCAGAATGTCTGGCGGATGCCATGTGCCAGCGGTGCCAAGCCCGGTTTGCCCCCA
CAGAGCGCATCGTCAACAGTAATGGGGAGCTCTACCATGAGCACTGCTTTGTGTGTGCACAGTG
CTTCCGGCCGTTTCCCGAGGGGCTCTTCTATGAGTTTGAGGGCCGGAAGTACTGTGAACACGAC
TTCCAAATGCTGTTCGCTCCATGCTGCGGATTCTGTGGTGAGTTTGTCATCGGCCGCGTGATCA
AGGCCATGAACGCCAACTGGCATCCGGGCTGCTTCCGCTGTGAGCTGTGCGACGTGGAGCTGGC
TGACCTGGGCTTTGTGAAGAACGCAGGCAGGCACCTCTGCCGGCCTTGCCACAACCGTGAGAAG
GCCAAGGGCCTGGGCAAATTCATCTGCCAGAGGTGTCACCTCGCCATTGATGAGCAGCCCCTCA
TGTTCAAGAATGATCCCTACCACCCGGACCACTTCAGCTGCTCCCACTGTGGGAAGGAGCTGAC
CTCTGATGCCCGAGAGCTGAAGGGTGAGCTCTACTGCCTGCCTTGCCACGACAAGATGGGCATT
CCCATCTGTGGGGCTTGCCGCCGGCCCATTGAGGGCCGTGTGGTCAATGCGCTGGGCAAACAGT
GGCACGTGGAGCACTTCGTCTGCGCCAAGTGTGAGAAGCCATTCTTGGGGCACCGGCACTATGA
GAAGAAAGGCCTAGCATACTGTGAGACCCACTACAACCAGCTCTTTGGGGATGTCTGCTACAAC
TGCAGTCATGTGATTGAGGGTGACGGTGAGGCCTCTGTCCCCAAGCCCCTTCCTCCCTTGCTTT
CTCCCAACCAGTCTGTTCTCCTGGTGGTGGGAGGGGCAGGTGGGGTGGGAGGGGGTTTGGGGGA
TGTGGGGGAGTGGAGGAATTGTGGTTGGTAGTGGGGGGTGGCTGTCCCACAGCTGCAGGCTCAT
CTGGCTCAGCTGGGCCTGCAGCTGGCTTGGATGGGAACTGCTAATTCTATGTCTGGCCTTGCAG
TGGTGTCGGCCCTCAGCAAAGCCTGGTGTGTGAACTGCTTCTCCTGTTCCGCCTGCAACATGAA
GCTCACTCTGAAGAACAAGTTTGTGGAGTTCGATATGAAGCCTGTGTGTAAGAGGTGCTATGAA
AGGTTCCCCCTGGAACTGAAGAAGAGGTTGAAGAAGCTGTCCGACCTGAGCTCCCGCAAGGCCC
AGCCCAAGCCTGTGGGCGTCAACTCAGTCTGAAGGTCCTTGGCCTCCTTGCCTGCCTGCAGAAC
CTTAGCCCTCACCCTCTGCCCCAAGTCCTGCTAGCCACCTCCCACTTCTGCTCCAATGCAGCCC
CTCCTCCGGGGGCATTCTGTTTCCAGTCCACTTCGGGCTATGTAGTCCTCTCTTCTGTGCTGAG
GCCTGGCCCACGTCACAAGCATTTCCTTCCAGACCCACAACCTCCAGGGACTGGGACAAACTGG
GGCAGGATGATTTGCCACTTGCTTGGCCCGCTGATCCCAGCCCGATACCTCTCCTCTCTACTCT
CCCAGGAGACTCTCAGGCCCAGTGTGACCCTGGGGCTTGGCTGAGAAGCTGACCCAGCCCCAGG
GCCAGCACCACGCAGACAGAGGCTTCAGGGGAGTACCCTTCAGTTATTCAACCACAGTAGGTAG
CTTGTGCTTACACTGTGTCAGCAAACCCAGCTAGAGGGCTGGGACCCCCATTGCCTTTGCCACT
CAGAAGACCTCATAGAAAGCTTCCCAGCTGCCCACCCAGCTTGGGTCCCATTTCCCAGGAGCAC
ATTGCCCTGGCCGTCTCAGACCCAAAAGTGGTGACATACTTGCACAATGAAGGCTGATTCACAT
TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_006254596 ⟹ XP_006254658

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	23,563,421 - 23,592,137 (+)	NCBI
Rnor_6.0	18	24,717,391 - 24,746,158 (+)	NCBI
Rnor_5.0	18	24,422,274 - 24,460,482 (+)	NCBI

Sequence:

show sequence

ATTATAACTTCATTCCCTTTAAAAGGAAAAGTATGCCCGGAATCCGGGAGGTGGCAACAGAGTC
CGGGTAGTGAGGACGTGACCGACCCACTCAAGTTGGGAGTCTCTAGTGTCAGTCCCTAGTGTTC
CCAGGGTTGACACTAGCACCGGCATCCCCTGTGCCCCTTGAAGCTGTCCCCTGCACTCCTCTTC
CCAGCTGCAGGCTGGGTGGAGCCGCCCTCGCGGTTTGGGCGTGTTCTTCCCTGTGCCGGGACCC
TGCGTCCTCTGTCAGGGACCCAGCAGTGGACTGCTGACGGGTGCTAGGCGCGCGGCCACCATGA
CGGGAAGCAACATGTCAGAATGTCTGGCGGATGCCATGTGCCAGCGGTGCCAAGCCCGGTTTGC
CCCCACAGAGCGCATCGTCAACAGTAATGGGGAGCTCTACCATGAGCACTGCTTTGTGTGTGCA
CAGTGCTTCCGGCCGTTTCCCGAGGGGCTCTTCTATGAGTTTGAGGGCCGGAAGTACTGTGAAC
ACGACTTCCAAATGCTGTTCGCTCCATGCTGCGGATTCTGTGGTGAGTTTGTCATCGGCCGCGT
GATCAAGGCCATGAACGCCAACTGGCATCCGGGCTGCTTCCGCTGTGAGCTGTGCGACGTGGAG
CTGGCTGACCTGGGCTTTGTGAAGAACGCAGGCAGGCACCTCTGCCGGCCTTGCCACAACCGTG
AGAAGGCCAAGGGCCTGGGCAAATTCATCTGCCAGAGGTGTCACCTCGCCATTGATGAGCAGCC
CCTCATGTTCAAGAATGATCCCTACCACCCGGACCACTTCAGCTGCTCCCACTGTGGGAAGGAG
CTGACCTCTGATGCCCGAGAGCTGAAGGGTGAGCTCTACTGCCTGCCTTGCCACGACAAGATGG
GCATTCCCATCTGTGGGGCTTGCCGCCGGCCCATTGAGGGCCGTGTGGTCAATGCGCTGGGCAA
ACAGTGGCACGTGGAGCACTTCGTCTGCGCCAAGTGTGAGAAGCCATTCTTGGGGCACCGGCAC
TATGAGAAGAAAGGCCTAGCATACTGTGAGACCCACTACAACCAGCTCTTTGGGGATGTCTGCT
ACAACTGCAGTCATGTGATTGAGGGTGACGTGGTGTCGGCCCTCAGCAAAGCCTGGTGTGTGAA
CTGCTTCTCCTGTTCCGCCTGCAACATGAAGCTCACTCTGAAGAACAAGTTTGTGGAGTTCGAT
ATGAAGCCTGTGTGTAAGAGGTGCTATGAAAGGTTCCCCCTGGAACTGAAGAAGAGGTTGAAGA
AGCTGTCCGACCTGAGCTCCCGCAAGGCCCAGCCCAAGCCTGTGGGCGTCAACTCAGTCTGAAG
GTCCTTGGCCTCCTTGCCTGCCTGCAGAACCTTAGCCCTCACCCTCTGCCCCAAGTCCTGCTAG
CCACCTCCCACTTCTGCTCCAATGCAGCCCCTCCTCCGGGGGCATTCTGTTTCCAGTCCACTTC
GGGCTATGTAGTCCTCTCTTCTGTGCTGAGGCCTGGCCCACGTCACAAGCATTTCCTTCCAGAC
CCACAACCTCCAGGGACTGGGACAAACTGGGGCAGGATGATTTGCCACTTGCTTGGCCCGCTGA
TCCCAGCCCGATACCTCTCCTCTCTACTCTCCCAGGAGACTCTCAGGCCCAGTGTGACCCTGGG
GCTTGGCTGAGAAGCTGACCCAGCCCCAGGGCCAGCACCACGCAGACAGAGGCTTCAGGGGAGT
ACCCTTCAGTTATTCAACCACAGTAGGTAGCTTGTGCTTACACTGTGTCAGCAAACCCAGCTAG
AGGGCTGGGACCCCCATTGCCTTTGCCACTCAGAAGACCTCATAGAAAGCTTCCCAGCTGCCCA
CCCAGCTTGGGTCCCATTTCCCAGGAGCACATTGCCCTGGCCGTCTCAGACCCAAAAGTGGTGA
CATACTTGCACAATGAAGGCTGATTCACATT

hide sequence

RefSeq Acc Id:

XM_006254597 ⟹ XP_006254659

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	23,553,813 - 23,592,137 (+)	NCBI
Rnor_6.0	18	24,707,951 - 24,746,158 (+)	NCBI
Rnor_5.0	18	24,422,274 - 24,460,482 (+)	NCBI

Sequence:

show sequence

CTGAAATCAGAGGGTGCTGTCACCACTTTTGTCCCGTCATCCTGGGTCTCTAGGGAAGCAAGCT
TTTCCTTCCTAAACTTCAGTCCTAGCTCGTCCTTAGCTGACCCCAAAGCGCTTCTGGCCACACC
TTCTAGGCTTGGACCTCAGGCCAAGTCTCTGGCCTAGCTAGGAAGAGGTGAGGGTGCAGCTCAG
CGTCTGGGAGCTGCGGTGGTGGGACATTCTGGTTACCGTGCAGTCTCTCTCTCTCCACGTGGCT
GTGCCAAACAGGCTGGGCACCTGCTGTTGCCCCTGGAGGAGCTACAGGCTGCCCTCAGGGAAGG
AGGGCCCCAGGAAGTAAAGCATCGTCTCTGACACCAAGCAACATGTCAGAATGTCTGGCGGATG
CCATGTGCCAGCGGTGCCAAGCCCGGTTTGCCCCCACAGAGCGCATCGTCAACAGTAATGGGGA
GCTCTACCATGAGCACTGCTTTGTGTGTGCACAGTGCTTCCGGCCGTTTCCCGAGGGGCTCTTC
TATGAGTTTGAGGGCCGGAAGTACTGTGAACACGACTTCCAAATGCTGTTCGCTCCATGCTGCG
GATTCTGTGGTGAGTTTGTCATCGGCCGCGTGATCAAGGCCATGAACGCCAACTGGCATCCGGG
CTGCTTCCGCTGTGAGCTGTGCGACGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAACGCAGGC
AGGCACCTCTGCCGGCCTTGCCACAACCGTGAGAAGGCCAAGGGCCTGGGCAAATTCATCTGCC
AGAGGTGTCACCTCGCCATTGATGAGCAGCCCCTCATGTTCAAGAATGATCCCTACCACCCGGA
CCACTTCAGCTGCTCCCACTGTGGGAAGGAGCTGACCTCTGATGCCCGAGAGCTGAAGGGTGAG
CTCTACTGCCTGCCTTGCCACGACAAGATGGGCATTCCCATCTGTGGGGCTTGCCGCCGGCCCA
TTGAGGGCCGTGTGGTCAATGCGCTGGGCAAACAGTGGCACGTGGAGCACTTCGTCTGCGCCAA
GTGTGAGAAGCCATTCTTGGGGCACCGGCACTATGAGAAGAAAGGCCTAGCATACTGTGAGACC
CACTACAACCAGCTCTTTGGGGATGTCTGCTACAACTGCAGTCATGTGATTGAGGGTGACGTGG
TGTCGGCCCTCAGCAAAGCCTGGTGTGTGAACTGCTTCTCCTGTTCCGCCTGCAACATGAAGCT
CACTCTGAAGAACAAGTTTGTGGAGTTCGATATGAAGCCTGTGTGTAAGAGGTGCTATGAAAGG
TTCCCCCTGGAACTGAAGAAGAGGTTGAAGAAGCTGTCCGACCTGAGCTCCCGCAAGGCCCAGC
CCAAGCCTGTGGGCGTCAACTCAGTCTGAAGGTCCTTGGCCTCCTTGCCTGCCTGCAGAACCTT
AGCCCTCACCCTCTGCCCCAAGTCCTGCTAGCCACCTCCCACTTCTGCTCCAATGCAGCCCCTC
CTCCGGGGGCATTCTGTTTCCAGTCCACTTCGGGCTATGTAGTCCTCTCTTCTGTGCTGAGGCC
TGGCCCACGTCACAAGCATTTCCTTCCAGACCCACAACCTCCAGGGACTGGGACAAACTGGGGC
AGGATGATTTGCCACTTGCTTGGCCCGCTGATCCCAGCCCGATACCTCTCCTCTCTACTCTCCC
AGGAGACTCTCAGGCCCAGTGTGACCCTGGGGCTTGGCTGAGAAGCTGACCCAGCCCCAGGGCC
AGCACCACGCAGACAGAGGCTTCAGGGGAGTACCCTTCAGTTATTCAACCACAGTAGGTAGCTT
GTGCTTACACTGTGTCAGCAAACCCAGCTAGAGGGCTGGGACCCCCATTGCCTTTGCCACTCAG
AAGACCTCATAGAAAGCTTCCCAGCTGCCCACCCAGCTTGGGTCCCATTTCCCAGGAGCACATT
GCCCTGGCCGTCTCAGACCCAAAAGTGGTGACATACTTGCACAATGAAGGCTGATTCACATT

hide sequence

RefSeq Acc Id:

XM_008772043 ⟹ XP_008770265

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	23,563,420 - 23,592,137 (+)	NCBI
Rnor_6.0	18	24,717,390 - 24,746,158 (+)	NCBI

Sequence:

show sequence

TATTATAACTTCATTCCCTTTAAAAGGAAAAGTATGCCCGGAATCCGGGAGGTGGCAACAGAGT
CCGGGTAGTGAGGACGTGACCGACCCACTCAAGTTGGGAGTCTCTAGTGTCAGTCCCTAGTGTT
CCCAGGGTTGACACTAGCACCGGCATCCCCTGTGCCCCTTGAAGCTGTCCCCTGCACTCCTCTT
CCCAGCTGCAGGCTGGGTGGAGCCGCCCTCGCGGTTTGGGCGTGTTCTTCCCTGTGCCGGGACC
CTGCGTCCTCTGTCAGGGACCCAGCAGTGGACTGCTGACGGGTGCTAGGCGCGCGGCCACCATG
ACGGGAAGGTTCAAGACAATCCAGGTTCCAGAGCAACATGTCAGAATGTCTGGCGGATGCCATG
TGCCAGCGGTGCCAAGCCCGGTTTGCCCCCACAGAGCGCATCGTCAACAGTAATGGGGAGCTCT
ACCATGAGCACTGCTTTGTGTGTGCACAGTGCTTCCGGCCGTTTCCCGAGGGGCTCTTCTATGA
GTTTGAGGGCCGGAAGTACTGTGAACACGACTTCCAAATGCTGTTCGCTCCATGCTGCGGATTC
TGTGGTGAGTTTGTCATCGGCCGCGTGATCAAGGCCATGAACGCCAACTGGCATCCGGGCTGCT
TCCGCTGTGAGCTGTGCGACGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAACGCAGGCAGGCA
CCTCTGCCGGCCTTGCCACAACCGTGAGAAGGCCAAGGGCCTGGGCAAATTCATCTGCCAGAGG
TGTCACCTCGCCATTGATGAGCAGCCCCTCATGTTCAAGAATGATCCCTACCACCCGGACCACT
TCAGCTGCTCCCACTGTGGGAAGGAGCTGACCTCTGATGCCCGAGAGCTGAAGGGTGAGCTCTA
CTGCCTGCCTTGCCACGACAAGATGGGCATTCCCATCTGTGGGGCTTGCCGCCGGCCCATTGAG
GGCCGTGTGGTCAATGCGCTGGGCAAACAGTGGCACGTGGAGCACTTCGTCTGCGCCAAGTGTG
AGAAGCCATTCTTGGGGCACCGGCACTATGAGAAGAAAGGCCTAGCATACTGTGAGACCCACTA
CAACCAGCTCTTTGGGGATGTCTGCTACAACTGCAGTCATGTGATTGAGGGTGACGTGGTGTCG
GCCCTCAGCAAAGCCTGGTGTGTGAACTGCTTCTCCTGTTCCGCCTGCAACATGAAGCTCACTC
TGAAGAACAAGTTTGTGGAGTTCGATATGAAGCCTGTGTGTAAGAGGTGCTATGAAAGGTTCCC
CCTGGAACTGAAGAAGAGGTTGAAGAAGCTGTCCGACCTGAGCTCCCGCAAGGCCCAGCCCAAG
CCTGTGGGCGTCAACTCAGTCTGAAGGTCCTTGGCCTCCTTGCCTGCCTGCAGAACCTTAGCCC
TCACCCTCTGCCCCAAGTCCTGCTAGCCACCTCCCACTTCTGCTCCAATGCAGCCCCTCCTCCG
GGGGCATTCTGTTTCCAGTCCACTTCGGGCTATGTAGTCCTCTCTTCTGTGCTGAGGCCTGGCC
CACGTCACAAGCATTTCCTTCCAGACCCACAACCTCCAGGGACTGGGACAAACTGGGGCAGGAT
GATTTGCCACTTGCTTGGCCCGCTGATCCCAGCCCGATACCTCTCCTCTCTACTCTCCCAGGAG
ACTCTCAGGCCCAGTGTGACCCTGGGGCTTGGCTGAGAAGCTGACCCAGCCCCAGGGCCAGCAC
CACGCAGACAGAGGCTTCAGGGGAGTACCCTTCAGTTATTCAACCACAGTAGGTAGCTTGTGCT
TACACTGTGTCAGCAAACCCAGCTAGAGGGCTGGGACCCCCATTGCCTTTGCCACTCAGAAGAC
CTCATAGAAAGCTTCCCAGCTGCCCACCCAGCTTGGGTCCCATTTCCCAGGAGCACATTGCCCT
GGCCGTCTCAGACCCAAAAGTGGTGACATACTTGCACAATGAAGGCTGATTCACATT

hide sequence

RefSeq Acc Id:

XM_017600989 ⟹ XP_017456478

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,717,724 - 24,746,158 (+)	NCBI

Sequence:

show sequence

GATGCCTTAAGTTAAGGGTGGAGGGTGACATGGTCCCGGAGAGATGTGGGGAAGCGGATCGTGG
CGGGAGGTCCCGCGGACTCATTGCTTCCAGGCTGCGACCCCTCTGGGAATGAGAAGCAACATGT
CAGAATGTCTGGCGGATGCCATGTGCCAGCGGTGCCAAGCCCGGTTTGCCCCCACAGAGCGCAT
CGTCAACAGTAATGGGGAGCTCTACCATGAGCACTGCTTTGTGTGTGCACAGTGCTTCCGGCCG
TTTCCCGAGGGGCTCTTCTATGAGTTTGAGGGCCGGAAGTACTGTGAACACGACTTCCAAATGC
TGTTCGCTCCATGCTGCGGATTCTGTGGTGAGTTTGTCATCGGCCGCGTGATCAAGGCCATGAA
CGCCAACTGGCATCCGGGCTGCTTCCGCTGTGAGCTGTGCGACGTGGAGCTGGCTGACCTGGGC
TTTGTGAAGAACGCAGGCAGGCACCTCTGCCGGCCTTGCCACAACCGTGAGAAGGCCAAGGGCC
TGGGCAAATTCATCTGCCAGAGGTGTCACCTCGCCATTGATGAGCAGCCCCTCATGTTCAAGAA
TGATCCCTACCACCCGGACCACTTCAGCTGCTCCCACTGTGGGAAGGAGCTGACCTCTGATGCC
CGAGAGCTGAAGGGTGAGCTCTACTGCCTGCCTTGCCACGACAAGATGGGCATTCCCATCTGTG
GGGCTTGCCGCCGGCCCATTGAGGGCCGTGTGGTCAATGCGCTGGGCAAACAGTGGCACGTGGA
GCACTTCGTCTGCGCCAAGTGTGAGAAGCCATTCTTGGGGCACCGGCACTATGAGAAGAAAGGC
CTAGCATACTGTGAGACCCACTACAACCAGCTCTTTGGGGATGTCTGCTACAACTGCAGTCATG
TGATTGAGGGTGACGTGGTGTCGGCCCTCAGCAAAGCCTGGTGTGTGAACTGCTTCTCCTGTTC
CGCCTGCAACATGAAGCTCACTCTGAAGAACAAGTTTGTGGAGTTCGATATGAAGCCTGTGTGT
AAGAGGTGCTATGAAAGGTTCCCCCTGGAACTGAAGAAGAGGTTGAAGAAGCTGTCCGACCTGA
GCTCCCGCAAGGCCCAGCCCAAGCCTGTGGGCGTCAACTCAGTCTGAAGGTCCTTGGCCTCCTT
GCCTGCCTGCAGAACCTTAGCCCTCACCCTCTGCCCCAAGTCCTGCTAGCCACCTCCCACTTCT
GCTCCAATGCAGCCCCTCCTCCGGGGGCATTCTGTTTCCAGTCCACTTCGGGCTATGTAGTCCT
CTCTTCTGTGCTGAGGCCTGGCCCACGTCACAAGCATTTCCTTCCAGACCCACAACCTCCAGGG
ACTGGGACAAACTGGGGCAGGATGATTTGCCACTTGCTTGGCCCGCTGATCCCAGCCCGATACC
TCTCCTCTCTACTCTCCCAGGAGACTCTCAGGCCCAGTGTGACCCTGGGGCTTGGCTGAGAAGC
TGACCCAGCCCCAGGGCCAGCACCACGCAGACAGAGGCTTCAGGGGAGTACCCTTCAGTTATTC
AACCACAGTAGGTAGCTTGTGCTTACACTGTGTCAGCAAACCCAGCTAGAGGGCTGGGACCCCC
ATTGCCTTTGCCACTCAGAAGACCTCATAGAAAGCTTCCCAGCTGCCCACCCAGCTTGGGTCCC
ATTTCCCAGGAGCACATTGCCCTGGCCGTCTCAGACCCAAAAGTGGTGACATACTTGCACAATG
AAGGCTGATTCACATT

hide sequence

RefSeq Acc Id:

XM_017600990 ⟹ XP_017456479

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,717,850 - 24,746,158 (+)	NCBI

Sequence:

show sequence

CAGGGGGACCCATTCTCTTCTTTGAGAGAATGTGTGGGCTTTGGCAGGTGTAGTTTTATCGCCA
GTGATCCCAGACCAGGGACTTGTCTGAGGTCACCAGCCAACTGAAGCTTTAAAACGTAGCTGGA
GAGCACTGGGCTCTCCTGGCAACCTGCGGTGGGATCCTGGGTAATATTCACTCTAGAACCTTCT
ACTGCCTTCTCTGTAAACCAGAGGTAAAGGATGATTAGGTACCTGTGGAGAACTGTCTCTAAAC
CCTGAGTGTAGAGGCTGGGTGAGGGGCAGAGAATATCCCTCCAGCCTGCCCCGGTTAAAGATCT
CGGTCTCTTTGTACAGGTTCAAGACAATCCAGGTTCCAGAGCAACATGTCAGAATGTCTGGCGG
ATGCCATGTGCCAGCGGTGCCAAGCCCGGTTTGCCCCCACAGAGCGCATCGTCAACAGTAATGG
GGAGCTCTACCATGAGCACTGCTTTGTGTGTGCACAGTGCTTCCGGCCGTTTCCCGAGGGGCTC
TTCTATGAGTTTGAGGGCCGGAAGTACTGTGAACACGACTTCCAAATGCTGTTCGCTCCATGCT
GCGGATTCTGTGGTGAGTTTGTCATCGGCCGCGTGATCAAGGCCATGAACGCCAACTGGCATCC
GGGCTGCTTCCGCTGTGAGCTGTGCGACGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAACGCA
GGCAGGCACCTCTGCCGGCCTTGCCACAACCGTGAGAAGGCCAAGGGCCTGGGCAAATTCATCT
GCCAGAGGTGTCACCTCGCCATTGATGAGCAGCCCCTCATGTTCAAGAATGATCCCTACCACCC
GGACCACTTCAGCTGCTCCCACTGTGGGAAGGAGCTGACCTCTGATGCCCGAGAGCTGAAGGGT
GAGCTCTACTGCCTGCCTTGCCACGACAAGATGGGCATTCCCATCTGTGGGGCTTGCCGCCGGC
CCATTGAGGGCCGTGTGGTCAATGCGCTGGGCAAACAGTGGCACGTGGAGCACTTCGTCTGCGC
CAAGTGTGAGAAGCCATTCTTGGGGCACCGGCACTATGAGAAGAAAGGCCTAGCATACTGTGAG
ACCCACTACAACCAGCTCTTTGGGGATGTCTGCTACAACTGCAGTCATGTGATTGAGGGTGACG
TGGTGTCGGCCCTCAGCAAAGCCTGGTGTGTGAACTGCTTCTCCTGTTCCGCCTGCAACATGAA
GCTCACTCTGAAGAACAAGTTTGTGGAGTTCGATATGAAGCCTGTGTGTAAGAGGTGCTATGAA
AGGTTCCCCCTGGAACTGAAGAAGAGGTTGAAGAAGCTGTCCGACCTGAGCTCCCGCAAGGCCC
AGCCCAAGCCTGTGGGCGTCAACTCAGTCTGAAGGTCCTTGGCCTCCTTGCCTGCCTGCAGAAC
CTTAGCCCTCACCCTCTGCCCCAAGTCCTGCTAGCCACCTCCCACTTCTGCTCCAATGCAGCCC
CTCCTCCGGGGGCATTCTGTTTCCAGTCCACTTCGGGCTATGTAGTCCTCTCTTCTGTGCTGAG
GCCTGGCCCACGTCACAAGCATTTCCTTCCAGACCCACAACCTCCAGGGACTGGGACAAACTGG
GGCAGGATGATTTGCCACTTGCTTGGCCCGCTGATCCCAGCCCGATACCTCTCCTCTCTACTCT
CCCAGGAGACTCTCAGGCCCAGTGTGACCCTGGGGCTTGGCTGAGAAGCTGACCCAGCCCCAGG
GCCAGCACCACGCAGACAGAGGCTTCAGGGGAGTACCCTTCAGTTATTCAACCACAGTAGGTAG
CTTGTGCTTACACTGTGTCAGCAAACCCAGCTAGAGGGCTGGGACCCCCATTGCCTTTGCCACT
CAGAAGACCTCATAGAAAGCTTCCCAGCTGCCCACCCAGCTTGGGTCCCATTTCCCAGGAGCAC
ATTGCCCTGGCCGTCTCAGACCCAAAAGTGGTGACATACTTGCACAATGAAGGCTGATTCACAT
T

hide sequence

RefSeq Acc Id:

XM_017600991 ⟹ XP_017456480

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,717,850 - 24,746,158 (+)	NCBI

Sequence:

show sequence

CAGGGGGACCCATTCTCTTCTTTGAGAGAATGTGTGGGCTTTGGCAGGTGTAGTTTTATCGCCA
GTGATCCCAGACCAGGGACTTGTCTGAGGTCACCAGCCAACTGAAGCTTTAAAACGTAGCTGGA
GAGCACTGGGCTCTCCTGGCAACCTGCGGTGGGATCCTGGGTAATATTCACTCTAGAACCTTCT
ACTGCCTTCTCTGTAAACCAGAGGTAAAGGATGATTAGGTACCTGTGGAGAACTGTCTCTAAAC
CCTGAGTGTAGAGGCTGGGTGAGGGGCAGAGAATATCCCTCCAGCCTGCCCCGGTTAAAGATCT
CGGTCTCTTTGTACAGGTTCAAGACAATCCAGGTTCCAGAGGTGGGTCACAGGTCCATAAGAGT
CCGGCCGGTTTTGGCCTCTGCAGTTGCTTCTGGAACGTGGCTGGCAACATGTCAGAATGTCTGG
CGGATGCCATGTGCCAGCGGTGCCAAGCCCGGTTTGCCCCCACAGAGCGCATCGTCAACAGTAA
TGGGGAGCTCTACCATGAGCACTGCTTTGTGTGTGCACAGTGCTTCCGGCCGTTTCCCGAGGGG
CTCTTCTATGAGTTTGAGGGCCGGAAGTACTGTGAACACGACTTCCAAATGCTGTTCGCTCCAT
GCTGCGGATTCTGTGGTGAGTTTGTCATCGGCCGCGTGATCAAGGCCATGAACGCCAACTGGCA
TCCGGGCTGCTTCCGCTGTGAGCTGTGCGACGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAAC
GCAGGCAGGCACCTCTGCCGGCCTTGCCACAACCGTGAGAAGGCCAAGGGCCTGGGCAAATTCA
TCTGCCAGAGGTGTCACCTCGCCATTGATGAGCAGCCCCTCATGTTCAAGAATGATCCCTACCA
CCCGGACCACTTCAGCTGCTCCCACTGTGGGAAGGAGCTGACCTCTGATGCCCGAGAGCTGAAG
GGTGAGCTCTACTGCCTGCCTTGCCACGACAAGATGGGCATTCCCATCTGTGGGGCTTGCCGCC
GGCCCATTGAGGGCCGTGTGGTCAATGCGCTGGGCAAACAGTGGCACGTGGAGCACTTCGTCTG
CGCCAAGTGTGAGAAGCCATTCTTGGGGCACCGGCACTATGAGAAGAAAGGCCTAGCATACTGT
GAGACCCACTACAACCAGCTCTTTGGGGATGTCTGCTACAACTGCAGTCATGTGATTGAGGGTG
ACGTGGTGTCGGCCCTCAGCAAAGCCTGGTGTGTGAACTGCTTCTCCTGTTCCGCCTGCAACAT
GAAGCTCACTCTGAAGAACAAGTTTGTGGAGTTCGATATGAAGCCTGTGTGTAAGAGGTGCTAT
GAAAGGTTCCCCCTGGAACTGAAGAAGAGGTTGAAGAAGCTGTCCGACCTGAGCTCCCGCAAGG
CCCAGCCCAAGCCTGTGGGCGTCAACTCAGTCTGAAGGTCCTTGGCCTCCTTGCCTGCCTGCAG
AACCTTAGCCCTCACCCTCTGCCCCAAGTCCTGCTAGCCACCTCCCACTTCTGCTCCAATGCAG
CCCCTCCTCCGGGGGCATTCTGTTTCCAGTCCACTTCGGGCTATGTAGTCCTCTCTTCTGTGCT
GAGGCCTGGCCCACGTCACAAGCATTTCCTTCCAGACCCACAACCTCCAGGGACTGGGACAAAC
TGGGGCAGGATGATTTGCCACTTGCTTGGCCCGCTGATCCCAGCCCGATACCTCTCCTCTCTAC
TCTCCCAGGAGACTCTCAGGCCCAGTGTGACCCTGGGGCTTGGCTGAGAAGCTGACCCAGCCCC
AGGGCCAGCACCACGCAGACAGAGGCTTCAGGGGAGTACCCTTCAGTTATTCAACCACAGTAGG
TAGCTTGTGCTTACACTGTGTCAGCAAACCCAGCTAGAGGGCTGGGACCCCCATTGCCTTTGCC
ACTCAGAAGACCTCATAGAAAGCTTCCCAGCTGCCCACCCAGCTTGGGTCCCATTTCCCAGGAG
CACATTGCCCTGGCCGTCTCAGACCCAAAAGTGGTGACATACTTGCACAATGAAGGCTGATTCA
CATT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001012163	(Get FASTA)	NCBI Sequence Viewer
	XP_006254658	(Get FASTA)	NCBI Sequence Viewer
	XP_006254659	(Get FASTA)	NCBI Sequence Viewer
	XP_008770265	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87108	(Get FASTA)	NCBI Sequence Viewer
	EDL76178	(Get FASTA)	NCBI Sequence Viewer
	EDL76179	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001012163 ⟸ NM_001012163

- UniProtKB:

Q5PQM7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ
MLFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAK
GLGKFICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELKGELYCLPCHDKMGIPI
CGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCS
HVIEGDGEASVPKPLPPLLSPNQSVLLVVGGAGGVGGGLGDVGEWRNCGW

hide sequence

RefSeq Acc Id:

XP_006254659 ⟸ XM_006254597

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ
MLFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAK
GLGKFICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELKGELYCLPCHDKMGIPI
CGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCS
HVIEGDVVSALSKAWCVNCFSCSACNMKLTLKNKFVEFDMKPVCKRCYERFPLELKKRLKKLSD
LSSRKAQPKPVGVNSV

hide sequence

RefSeq Acc Id:	XP_006254658 ⟸ XM_006254596
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAE1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGSNMSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYC EHDFQMLFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHN REKAKGLGKFICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELKGELYCLPCHDK MGIPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDV CYNCSHVIEGDVVSALSKAWCVNCFSCSACNMKLTLKNKFVEFDMKPVCKRCYERFPLELKKRL KKLSDLSSRKAQPKPVGVNSV hide sequence

RefSeq Acc Id:

XP_008770265 ⟸ XM_008772043

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ
MLFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAK
GLGKFICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELKGELYCLPCHDKMGIPI
CGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCS
HVIEGDVVSALSKAWCVNCFSCSACNMKLTLKNKFVEFDMKPVCKRCYERFPLELKKRLKKLSD
LSSRKAQPKPVGVNSV

hide sequence

RefSeq Acc Id:

XP_017456478 ⟸ XM_017600989

- Peptide Label:

isoform X1

- Sequence:

show sequence

MWGSGSWREVPRTHCFQAATPLGMRSNMSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFV
CAQCFRPFPEGLFYEFEGRKYCEHDFQMLFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCD
VELADLGFVKNAGRHLCRPCHNREKAKGLGKFICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCG
KELTSDARELKGELYCLPCHDKMGIPICGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGH
RHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALSKAWCVNCFSCSACNMKLTLKNKFVE
FDMKPVCKRCYERFPLELKKRLKKLSDLSSRKAQPKPVGVNSV

hide sequence

RefSeq Acc Id:

XP_017456480 ⟸ XM_017600991

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ
MLFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAK
GLGKFICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELKGELYCLPCHDKMGIPI
CGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCS
HVIEGDVVSALSKAWCVNCFSCSACNMKLTLKNKFVEFDMKPVCKRCYERFPLELKKRLKKLSD
LSSRKAQPKPVGVNSV

hide sequence

RefSeq Acc Id:

XP_017456479 ⟸ XM_017600990

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQ
MLFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAK
GLGKFICQRCHLAIDEQPLMFKNDPYHPDHFSCSHCGKELTSDARELKGELYCLPCHDKMGIPI
CGACRRPIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCS
HVIEGDVVSALSKAWCVNCFSCSACNMKLTLKNKFVEFDMKPVCKRCYERFPLELKKRLKKLSD
LSSRKAQPKPVGVNSV

hide sequence

RefSeq Acc Id:

ENSRNOP00000057770 ⟸ ENSRNOT00000061054

RefSeq Acc Id:

ENSRNOP00000075365 ⟸ ENSRNOT00000090923

Protein Domains

LIM zinc-binding

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700680

Promoter ID:

EPDNEW_R11202

Type:

initiation region

Name:

Lims2_1

Description:

LIM zinc finger domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11203

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,708,103 - 24,708,163	EPDNEW

RGD ID:

13700679

Promoter ID:

EPDNEW_R11203

Type:

multiple initiation site

Name:

Lims2_2

Description:

LIM zinc finger domain containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R11202

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	24,717,512 - 24,717,572	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
18	24374867	24374868	G	A	snv	FHL/EurMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305273	AgrOrtholog
Ensembl Genes	ENSRNOG00000016021	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000057770	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000075365	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000061054	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000090923	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7193274	IMAGE-MGC_LOAD
InterPro	PINCH	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
KEGG Report	rno:361303	UniProtKB/TrEMBL
MGC_CLONE	MGC:94717	IMAGE-MGC_LOAD
NCBI Gene	361303	ENTREZGENE
PANTHER	PTHR24210	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PhenoGen	Lims2	PhenoGen
PIRSF	PINCH	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
UniProt	A0A0G2KAE1	ENTREZGENE, UniProtKB/TrEMBL
	Q5PQM7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Lims2	LIM zinc finger domain containing 2	Lims2	LIM-type zinc finger domains 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-01-13	Lims2	LIM-type zinc finger domains 2	Lims2	LIM and senescent cell antigen like domains 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Lims2	LIM and senescent cell antigen like domains 2	Lims2_predicted	LIM and senescent cell antigen like domains 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Lims2_predicted	LIM and senescent cell antigen like domains 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations