Arap3 (ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3) - Rat Genome Database

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Gene: Arap3 (ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3) Rattus norvegicus
Analyze
Symbol: Arap3
Name: ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3
RGD ID: 1304938
Description: Predicted to enable GTPase activator activity; phosphatidylinositol-3,4,5-trisphosphate binding activity; and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within negative regulation of cell migration; negative regulation of small GTPase mediated signal transduction; and regulation of cell shape. Predicted to be located in lamellipodium and ruffle. Predicted to be active in cytoplasm. Orthologous to human ARAP3 (ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; INTERACTS WITH 1,3-dinitrobenzene; amphetamine; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Arap3-ps1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3; ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3, pseudogene 1; centaurin, delta 3; Centd3; dual-specificity Rho- and Arf-GTPase activating protein 1; LOC361314; RGD1304938; similar to ARF-GAP, RHO-GAP, ankyrin repeat and pleckstrin homology domains-containing protein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,058,739 - 30,085,415 (-)NCBIGRCr8
mRatBN7.21829,806,214 - 29,834,217 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,807,536 - 29,833,555 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01831,112,083 - 31,138,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,112,623 - 31,136,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,800,119 - 30,825,636 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,893,720 - 30,916,965 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,920,906 - 30,943,620 (-)NCBI
Celera1829,452,116 - 29,478,222 (-)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
lamellipodium  (ISO)
ruffle  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11804589   PMID:15546919  


Genomics

Comparative Map Data
Arap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,058,739 - 30,085,415 (-)NCBIGRCr8
mRatBN7.21829,806,214 - 29,834,217 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1829,807,536 - 29,833,555 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01831,112,083 - 31,138,142 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,112,623 - 31,136,200 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01830,800,119 - 30,825,636 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41830,893,720 - 30,916,965 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11830,920,906 - 30,943,620 (-)NCBI
Celera1829,452,116 - 29,478,222 (-)NCBICelera
Cytogenetic Map18p11NCBI
ARAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,653,402 - 141,682,230 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,653,401 - 141,682,230 (-)EnsemblGRCh38hg38GRCh38
GRCh375141,032,969 - 141,061,797 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,013,152 - 141,041,984 (-)NCBINCBI36Build 36hg18NCBI36
Build 345141,013,153 - 141,041,984NCBI
Celera5137,109,696 - 137,138,526 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,177,475 - 136,206,231 (-)NCBIHuRef
CHM1_15140,466,257 - 140,495,264 (-)NCBICHM1_1
T2T-CHM13v2.05142,179,417 - 142,208,259 (-)NCBIT2T-CHM13v2.0
Arap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,105,676 - 38,132,583 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,105,681 - 38,132,022 (-)EnsemblGRCm39 Ensembl
GRCm381837,972,623 - 37,999,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1837,972,628 - 37,998,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv371838,132,277 - 38,157,228 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,098,602 - 38,123,089 (-)NCBIMGSCv36mm8
Celera1839,316,005 - 39,340,938 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1819.85NCBI
Arap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541512,099,651 - 12,121,122 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541512,098,009 - 12,121,722 (+)NCBIChiLan1.0ChiLan1.0
ARAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24136,902,257 - 136,930,773 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,041,803 - 135,070,313 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,014,286 - 137,042,786 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,126,866 - 143,153,941 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,127,414 - 143,153,318 (-)Ensemblpanpan1.1panPan2
ARAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,614,799 - 36,639,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,615,361 - 36,639,525 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,666,700 - 33,691,184 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,069,004 - 37,093,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,069,013 - 37,093,492 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,143,570 - 34,168,054 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0234,955,080 - 34,979,561 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0235,762,386 - 35,785,328 (-)NCBIUU_Cfam_GSD_1.0
Arap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,915,483 - 150,940,433 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,490,850 - 12,513,996 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,490,838 - 12,514,256 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,304,080 - 143,327,588 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,304,076 - 143,327,588 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,506,693 - 149,530,184 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,280,010 - 44,308,046 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,279,727 - 44,306,272 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,395,355 - 33,572,620 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624774881,708 - 905,690 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624774881,162 - 907,310 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arap3
125 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:126
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000026342, ENSRNOT00000060347
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat

Markers in Region
D18Got28  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21829,958,673 - 29,958,876 (+)MAPPERmRatBN7.2
Rnor_6.01831,270,716 - 31,270,918NCBIRnor6.0
Rnor_5.01830,952,320 - 30,952,522UniSTSRnor5.0
RGSC_v3.41831,053,658 - 31,053,861RGDRGSC3.4
RGSC_v3.41831,053,659 - 31,053,861UniSTSRGSC3.4
RGSC_v3.11831,080,305 - 31,080,507RGD
Celera1829,600,463 - 29,600,665UniSTS
RH 3.4 Map18434.2UniSTS
RH 3.4 Map18434.2RGD
RH 2.0 Map18496.8RGD
Cytogenetic Map18p11UniSTS
D18Got29  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21829,819,005 - 29,819,304 (+)MAPPERmRatBN7.2
Rnor_6.01831,123,521 - 31,123,819NCBIRnor6.0
Rnor_5.01830,811,406 - 30,811,704UniSTSRnor5.0
RGSC_v3.41830,904,286 - 30,904,585RGDRGSC3.4
RGSC_v3.41830,904,287 - 30,904,585UniSTSRGSC3.4
RGSC_v3.11830,930,933 - 30,931,231RGD
Celera1829,463,569 - 29,463,867UniSTS
RH 3.4 Map18443.7UniSTS
RH 3.4 Map18443.7RGD
RH 2.0 Map18496.8RGD
Cytogenetic Map18p11UniSTS
BF389499  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21829,960,997 - 29,961,153 (+)MAPPERmRatBN7.2
Rnor_6.01831,273,399 - 31,273,554NCBIRnor6.0
Rnor_5.01830,955,083 - 30,955,238UniSTSRnor5.0
RGSC_v3.41831,055,735 - 31,055,890UniSTSRGSC3.4
Celera1829,602,539 - 29,602,694UniSTS
RH 3.4 Map18448.5UniSTS
Cytogenetic Map18p11UniSTS
AI045920  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21829,807,720 - 29,807,924 (+)MAPPERmRatBN7.2
Rnor_6.01831,112,268 - 31,112,471NCBIRnor6.0
Rnor_5.01830,800,308 - 30,800,511UniSTSRnor5.0
RGSC_v3.41830,893,909 - 30,894,112UniSTSRGSC3.4
Celera1829,452,301 - 29,452,504UniSTS
RH 3.4 Map18447.8UniSTS
Cytogenetic Map18p11UniSTS
RH138467  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21830,010,899 - 30,011,063 (+)MAPPERmRatBN7.2
Rnor_6.01831,322,916 - 31,323,079NCBIRnor6.0
Rnor_5.01831,004,208 - 31,004,371UniSTSRnor5.0
RGSC_v3.41831,105,164 - 31,105,327UniSTSRGSC3.4
Celera1829,652,436 - 29,652,599UniSTS
RH 3.4 Map18435.7UniSTS
Cytogenetic Map18p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 37 6 6 7 6 1 1 6 25 29 11 1
Low 3 6 51 35 12 35 7 10 68 10 11 7
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000080097   ⟹   ENSRNOP00000069654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1829,807,538 - 29,833,555 (-)Ensembl
Rnor_6.0 Ensembl1831,122,655 - 31,136,200 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000084438   ⟹   ENSRNOP00000069263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1829,807,536 - 29,833,471 (-)Ensembl
Rnor_6.0 Ensembl1831,112,623 - 31,136,200 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113487   ⟹   ENSRNOP00000076387
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1829,818,140 - 29,832,897 (-)Ensembl
RefSeq Acc Id: NM_001427276   ⟹   NP_001414205
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,058,739 - 30,084,701 (-)NCBI
RefSeq Acc Id: XM_039097402   ⟹   XP_038953330
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,058,739 - 30,085,410 (-)NCBI
mRatBN7.21829,806,214 - 29,834,211 (-)NCBI
RefSeq Acc Id: XM_039097403   ⟹   XP_038953331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,058,739 - 30,084,630 (-)NCBI
mRatBN7.21829,806,214 - 29,833,428 (-)NCBI
RefSeq Acc Id: XM_039097404   ⟹   XP_038953332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,058,739 - 30,085,409 (-)NCBI
mRatBN7.21829,806,214 - 29,834,211 (-)NCBI
RefSeq Acc Id: XM_039097405   ⟹   XP_038953333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,058,739 - 30,085,410 (-)NCBI
mRatBN7.21829,806,214 - 29,834,211 (-)NCBI
RefSeq Acc Id: XM_039097406   ⟹   XP_038953334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,064,583 - 30,085,415 (-)NCBI
mRatBN7.21829,813,380 - 29,834,217 (-)NCBI
RefSeq Acc Id: XM_063277465   ⟹   XP_063133535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,058,739 - 30,084,134 (-)NCBI
RefSeq Acc Id: XM_063277466   ⟹   XP_063133536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,058,739 - 30,082,102 (-)NCBI
RefSeq Acc Id: ENSRNOP00000069654   ⟸   ENSRNOT00000080097
RefSeq Acc Id: ENSRNOP00000069263   ⟸   ENSRNOT00000084438
RefSeq Acc Id: XP_038953330   ⟸   XM_039097402
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953332   ⟸   XM_039097404
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JVX3 (UniProtKB/TrEMBL),   A6J3E4 (UniProtKB/TrEMBL),   A0A0G2JUX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953333   ⟸   XM_039097405
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JUX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953331   ⟸   XM_039097403
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953334   ⟸   XM_039097406
- Peptide Label: isoform X5
- UniProtKB: A0A8I5XUU6 (UniProtKB/TrEMBL),   A6J3E5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076387   ⟸   ENSRNOT00000113487
RefSeq Acc Id: NP_001414205   ⟸   NM_001427276
- UniProtKB: A0A0G2JUX2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133535   ⟸   XM_063277465
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063133536   ⟸   XM_063277466
- Peptide Label: isoform X4
Protein Domains
Arf-GAP   PH   Ras-associating   Rho-GAP   SAM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304938 AgrOrtholog
BioCyc Gene G2FUF-7786 BioCyc
Ensembl Genes ENSRNOG00000055527 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080097.2 UniProtKB/TrEMBL
  ENSRNOT00000084438.2 UniProtKB/TrEMBL
  ENSRNOT00000113487.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  1.10.220.150 UniProtKB/TrEMBL
  1.10.555.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro ArfGAP UniProtKB/TrEMBL
  ARFGAP/RecO UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  Ras-assoc UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  RhoGAP_ARAP UniProtKB/TrEMBL
  RhoGAP_dom UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
NCBI Gene 361314 ENTREZGENE
PANTHER ARF-GAP WITH RHO-GAP DOMAIN, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C UniProtKB/TrEMBL
Pfam ArfGap UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PhenoGen Arap3 PhenoGen
PRINTS REVINTRACTNG UniProtKB/TrEMBL
PROSITE ARFGAP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
  PS50200 UniProtKB/TrEMBL
  RHOGAP UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055527 RatGTEx
SMART ArfGap UniProtKB/TrEMBL
  RhoGAP UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  SAM_homology UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
  SSF57863 UniProtKB/TrEMBL
UniProt A0A0G2JUX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JVX3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XUU6 ENTREZGENE, UniProtKB/TrEMBL
  A6J3E4 ENTREZGENE, UniProtKB/TrEMBL
  A6J3E5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-06-07 Arap3-ps1  ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3, pseudogene 1  Centd3  centaurin, delta 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Centd3  centaurin, delta 3   Centd3_predicted  centaurin, delta 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Centd3_predicted  centaurin, delta 3 (predicted)  RGD1304938_predicted  similar to ARF-GAP, RHO-GAP, ankyrin repeat and pleckstrin homology domains-containing protein 3; dual-specificity Rho- and Arf-GTPase activating protein 1 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1304938_predicted  similar to ARF-GAP, RHO-GAP, ankyrin repeat and pleckstrin homology domains-containing protein 3; dual-specificity Rho- and Arf-GTPase activating protein 1 (predicted)  LOC361314_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361314_predicted  similar to ARF-GAP, RHO-GAP, ankyrin repeat and pleckstrin homology domains-containing protein 3; dual-specificity Rho- and Arf-GTPase activating protein 1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL