Hars2 (histidyl-tRNA synthetase 2, mitochondrial)

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Gene: Hars2 (histidyl-tRNA synthetase 2, mitochondrial) Rattus norvegicus

Analyze

Symbol:

Hars2

Name:

histidyl-tRNA synthetase 2, mitochondrial

RGD ID:

1308426

Description:

Predicted to enable histidine-tRNA ligase activity and identical protein binding activity. Predicted to be involved in histidyl-tRNA aminoacylation. Predicted to be active in cytosol and mitochondrion. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human HARS2 (histidyl-tRNA synthetase 2, mitochondrial); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Hars2l; histidyl-tRNA synthetase 2; histidyl-tRNA synthetase 2, mitochondrial (putative); histidyl-tRNA synthetase 2-like; LOC307491; MGC109366; probable histidine--tRNA ligase, mitochondrial; RGD1308426; similar to histidyl-tRNA synthetase-like; zinc finger, matrin type 2; Zmat2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	HARS2 (histidyl-tRNA synthetase 2, mitochondrial)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Hars2 (histidyl-tRNA synthetase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Hars2 (histidyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	HARS2 (histidyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	HARS2 (histidyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Hars2 (histidyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	HARS2 (histidyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	HARS2 (histidyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Hars2 (histidyl-tRNA synthetase 2, mitochondrial)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZMAT2 (zinc finger matrin-type 2)	HGNC	PhylomeDB, Treefam
Alliance orthologs ³
Homo sapiens (human):	HARS2 (histidyl-tRNA synthetase 2, mitochondrial)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Hars2 (histidyl-tRNA synthetase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	hars (histidyl-tRNA synthetase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	HTS1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	HisRS	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	hars-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	hars2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	28,398,790 - 28,408,075 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	28,398,795 - 28,414,747 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	28,525,979 - 28,535,208 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	18	29,288,059 - 29,297,284 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	18	28,623,283 - 28,632,512 (+)	NCBI	Rnor_WKY
Rnor_6.0	18	29,629,203 - 29,638,460 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	29,629,184 - 29,638,721 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	29,332,574 - 29,341,926 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	29,483,181 - 29,491,738 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	29,514,082 - 29,518,382 (+)	NCBI
Celera	18	28,119,418 - 28,128,621 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 31 (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Perrault syndrome (ISO)

Perrault Syndrome 2 (ISO)

sensorineural hearing loss (ISO)

Usher syndrome type 3B (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

folic acid (ISO)

gentamycin (EXP)

indometacin (ISO)

lipopolysaccharide (ISO)

menadione (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

resveratrol (ISO)

Soman (EXP)

tetrachloromethane (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

histidyl-tRNA aminoacylation (IBA,ISO)

mRNA splicing, via spliceosome (IBA)

Cellular Component

cytosol (IBA)

mitochondrion (IBA,ISO)

U4/U6 x U5 tri-snRNP complex (IBA)

Molecular Function

ATP binding (IEA)

histidine-tRNA ligase activity (IBA,ISO)

identical protein binding (IBA,ISO)

nucleic acid binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

histidine metabolic pathway (ISO)

histidinemia pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:18614015	PMID:21464306	PMID:22681889

Genomics

Comparative Map Data

Hars2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	28,398,790 - 28,408,075 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	28,398,795 - 28,414,747 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	28,525,979 - 28,535,208 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	18	29,288,059 - 29,297,284 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	18	28,623,283 - 28,632,512 (+)	NCBI	Rnor_WKY
Rnor_6.0	18	29,629,203 - 29,638,460 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	29,629,184 - 29,638,721 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	29,332,574 - 29,341,926 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	29,483,181 - 29,491,738 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	18	29,514,082 - 29,518,382 (+)	NCBI
Celera	18	28,119,418 - 28,128,621 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

HARS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	140,691,455 - 140,699,305 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	5	140,691,430 - 140,699,305 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	140,071,040 - 140,078,890 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	140,051,202 - 140,059,074 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	140,051,201 - 140,059,073	NCBI
Celera	5	136,147,766 - 136,155,638 (+)	NCBI		Celera
Cytogenetic Map	5	q31.3	NCBI
HuRef	5	135,216,262 - 135,224,154 (+)	NCBI		HuRef
CHM1_1	5	139,504,261 - 139,512,161 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	141,216,842 - 141,224,701 (+)	NCBI		T2T-CHM13v2.0

Hars2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	36,916,257 - 36,925,615 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	36,916,061 - 36,925,615 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	36,783,202 - 36,792,562 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	36,783,008 - 36,792,562 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	36,942,934 - 36,952,216 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	36,909,254 - 36,918,536 (+)	NCBI		MGSCv36	mm8
Celera	18	37,235,296 - 37,244,596 (+)	NCBI		Celera
Cytogenetic Map	18	B2	NCBI

Hars2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	12,550 - 19,282 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	12,550 - 19,282 (-)	NCBI	ChiLan1.0	ChiLan1.0

HARS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	5	134,089,019 - 134,096,702 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	136,056,060 - 136,065,588 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	142,172,075 - 142,179,950 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	142,172,081 - 142,179,950 (+)	Ensembl	panpan1.1		panPan2

HARS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	35,843,611 - 35,851,257 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	35,843,706 - 35,850,760 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	32,882,606 - 32,890,252 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	36,299,236 - 36,306,899 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	36,299,284 - 36,306,892 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	33,351,339 - 33,358,986 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	34,219,342 - 34,227,112 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	34,972,058 - 34,979,705 (+)	NCBI		UU_Cfam_GSD_1.0

Hars2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	151,978,877 - 151,986,315 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	9,624,927 - 9,632,611 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936531	9,625,206 - 9,633,463 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HARS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	142,401,328 - 142,409,619 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	142,401,279 - 142,410,253 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	148,345,465 - 148,353,805 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HARS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	43,323,847 - 43,333,620 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	43,323,892 - 43,331,401 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	34,523,360 - 34,533,110 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hars2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	33,435,806 - 33,443,227 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	33,435,777 - 33,443,036 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Hars2
16 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	170
Count of miRNA genes:	126
Interacting mature miRNAs:	150
Transcripts:	ENSRNOT00000021797
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat

Markers in Region

RH131148

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	28,407,852 - 28,408,035 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	29,638,238 - 29,638,420	NCBI	Rnor6.0
Rnor_5.0	18	29,341,704 - 29,341,886	UniSTS	Rnor5.0
RGSC_v3.4	18	29,491,516 - 29,491,698	UniSTS	RGSC3.4
Celera	18	28,128,399 - 28,128,581	UniSTS
Cytogenetic Map	18	p11	UniSTS

BG373676

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	28,407,338 - 28,407,493 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	29,637,724 - 29,637,878	NCBI	Rnor6.0
Rnor_5.0	18	29,341,190 - 29,341,344	UniSTS	Rnor5.0
RGSC_v3.4	18	29,491,002 - 29,491,156	UniSTS	RGSC3.4
Celera	18	28,127,885 - 28,128,039	UniSTS
Cytogenetic Map	18	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	52	36	19	36	8	10	74	35	38	11	8
Low			5	5		5		1			3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254575	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039096864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005496038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK481952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV075096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000021516 ⟹ ENSRNOP00000021516

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	28,409,600 - 28,414,747 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000021797 ⟹ ENSRNOP00000021797

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	28,398,817 - 28,408,062 (+)	Ensembl
Rnor_6.0 Ensembl	18	29,629,184 - 29,638,721 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095646 ⟹ ENSRNOP00000078926

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	28,398,817 - 28,408,062 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097043 ⟹ ENSRNOP00000085580

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	28,401,158 - 28,408,075 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104252 ⟹ ENSRNOP00000090091

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	28,398,811 - 28,413,484 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000112291 ⟹ ENSRNOP00000085665

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	28,398,795 - 28,407,560 (+)	Ensembl

RefSeq Acc Id:

NM_001014012 ⟹ NP_001014034

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	28,398,843 - 28,408,075 (+)	NCBI
Rnor_6.0	18	29,629,231 - 29,638,460 (+)	NCBI
Rnor_5.0	18	29,332,574 - 29,341,926 (+)	NCBI
RGSC_v3.4	18	29,483,181 - 29,491,738 (+)	RGD
Celera	18	28,119,418 - 28,128,621 (+)	RGD

Sequence:

show sequence

CCGGACTAACTCCGAGCTCAGGCGTTTCCAGCTCTCCGTAGCCTTCCTGAAATCGGACTGGTCT
CATTCCCAGTCCCTTGACGTCTGTTCCAGAAAGCCGGCGTCCTGTTGCACAAATGCCCCACCTA
GGGCCCCTGCGCTGTAGGACCTGGGCTGCACTACTCGGCCAACTCCTGCGACCTCCCCGCACTG
TGTGCAACCGGGCGGTCGGCTGTCATAGCCAGGTTGCGAAGGCAGTGTTAACATCTGAGCAACT
GAAACCACATCAACAAAAACCAAATTTTATCATCAAGGTTCCAAAGGGCACCAGGGATTTAAGT
CCTCAACAGATGGTTGTGAGGGAGAAAATTCTTGATAAGATTATTAGCTGTTTTAAACGTCATG
GGGCAAAGGGGTTGGACACGCCAGCATTTGAGCTAAAAGAAATGCTCACCGAGAAGTATGAAGA
CAACTTCGGCCTCATGTATGATTTGGAGGATCAAGGTGGGGAGTTGCTGTCTCTGCGCTATGAC
CTTACTGTCCCTTTTGCTCGCTATCTGGCCATGAATAAATTGAAGAGGATGAAACGGTATCAAG
TGGGAAAGGTGTGGAGGCGAGAGAGTCCAGCTATAGTCCAGGGCCGCTACCGGGAGTTCTGCCA
GTGTGATTTTGACATTGCTGGTGAGTTTGACCCAATGATCCCTGATGCAGAGTGTTTGAGGATT
ATGTGTGAAATCCTAAGTGGATTGCAGCTGGGGGACTTTCTCATTAAGGTAAATGACCGTCGGG
TTGTAGACGGGATGTTTGCTGTCTGTGGTGTTCCTGAGAGCAAGTTCCGTACCATCTGCTCCTC
AATGGACAAACTAGACAAGATGTCTTGGGAAGATGTGAGACTTGAGATGGTGGCAGGGAAAGGC
CTAGCTCCTGAGGTGGCTGATCGAATTGGGGACTACGTCCAATGCCATGGGGGGATATCCCTGG
TAGAGGAGCTGTTCAAGGATCCCAGACTGTCCCAAAGCCAGCTGGCCTTGCAGGGCCTAGGGGA
CCTGAAGCTGCTCTTTGAATACCTGAGGTTATTTGGAATTGCCGATAAGATCTCCCTTGATCTG
AGTCTGGCCCGGGGCCTGGACTATTATACAGGAGTCATTTATGAAGCAGTACTGCTAGAGTCTC
CAGCTCAGGCCGGAAAGGAGACTCTGAATGTGGGTAGTGTGGCTGCTGGTGGGCGCTATGACAG
GCTGGTAGCCCAGTTTGATCCCAAGGGACATAGCGTGCCTTGTGTGGGGTTGAGCATTGGAGTA
GAGAGAATCTTCTATCTTGTGGAGCAGAAGATGAAGATTTCTTGTGAGAAGGTTCGAACCACAG
AGACCCAAGTGTTTGTGGCCACGCCCCAGAAGAACTTCCTCCAAGAGCGTTTGAAGATAATTGC
ACAGCTTTGGGATGCAGGGATCAAGGCAGAGATGCTTTATAAAAACAACCCTAAACTGTTAACC
CAGCTGCACTATTGTGAGAAAGAAGACATTCCTCTAATGGTCATTATTGGTGAGCAAGAACAGA
ATGAAGGTGTCGTCAAGCTCCGTTCAGTGGCCAGCAGAGAAGAAGTGACCGTTAATCGAGAAAG
TCTTGTGGCTGAAATTCAGAAGCGACTGTCTGAGTCTTGATTAGTGCCTGATTTCCATCTGCTG
CTCTTAGAAGAAAAGTTTTCAGCTAGAACCAAGTTCTGACAGACTTTACCCAAGTTGGCCAGCA
TGGATTTTGTACAAGTGCCTTCTGCTTCTATTCTCTCCTGGATACAGAGCTACAGAAGGACCTG
AGGACTCGTGGACTAACATTAGCAGCTGCTCTGTTAGAATGCACATGGCTGTCATGCCAAAGAG
GCATCCTGTAGCTGCAAAGGCAGATCTAAAGTGCCTCTGAATTCTGTCAAAGGGATGTTAGGAT
GGTTGCTATGAGAAAAGCTCTGGAAGGGTTAGTTGCCTAAGGCTAAGACTCTGACCCATTGAAA
TGAGAAGCTAATATGTACTTCACTTTTGACTGTAGCTTAGGAACCAGATTCTGGAGAATTTGTC
TACATCAACTATGGGTTGTCCATGGAGTTACATGGACAGTAGGAATGGACAGAAAAAAGAGATG
CTATACCAAGGGCCCAGCAGTGCATCTGTTGGTTCTTCCAGTTAACAGTAGAAGGTTGGGCTAC
TTCATAATTTTGAACATTGAACTTAATGGATGATAAGTTAGTGATCTGCTCTTTTGAGGTTTTG
AACACCATTCCATTTGTTATAGTAATTTTTCTGGATTATTCCATATCCTGCTCTGGAGATTGTT
CTAGAAGTGGTTATATGATAGGTTACATTTCAAAAATGTACTAGTGGGCTGCAGAGATGGCTCA
CTGATTAAGGGGGCATATTGCTTTTCCAGAGGCCCTGAGTTCAGTTCCTAGCAACCACATCAGA
GTGATTACAACTGCCTGTAACTCCAGTAACAGTTATCTGAGGCCCTCTTCTGGCCTCCACAAAC
ACCTGCACTTAATGTGCACATACTTATGCACAGACACATACATATAATTAAGAATAAAATAATT
TTAAAAAATAAACACACTTTGAGTAATTTGTCACCGAAGGATTAATCTGTGTAGGCTTTAGGAA
ATGTTTGAGTGTAATTTGGAGAATCGTGTGAGTTACGAGTAACCTACCCTGGGGCCCACATGGT
AGAAGAAGAGACAGATTTTCTTGTTTGTCCTCTGGCCTCTACCCACTTACCATGACTTGTAAAG
CACACACGCAGGCTTATATACAAAATAAAGTATAAAAGACAAAACAACCCACCAAAACACCAAC
ATCAAGTGTGGCTACGGACATGGCTCTCTTGATAGAATGTCTGCCTAGCACCTGGGAAGTGAAG
CAAGAGATCAGAAGTTCAAAGTCAGCTTTGGCGCCAGGCAAGGTGGCACAGGACTTTAATCCTA
GTCCAAGGGAAGTAAAGACAGGCCAATTATCTGTGTTGTAGGTTAGCCATGGCTACATAGTGAA
ACCCTGTATAAAAATTCATTCAGCCTTGGGTTTACATGAGATGCTATGTCAATAAAACAAAAGA
AAAACCCTTTGCCTGAA

hide sequence

RefSeq Acc Id:

XM_006254575 ⟹ XP_006254637

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	28,398,792 - 28,408,075 (+)	NCBI
Rnor_6.0	18	29,629,203 - 29,638,452 (+)	NCBI
Rnor_5.0	18	29,332,574 - 29,341,926 (+)	NCBI

Sequence:

show sequence

GAGCGTGAGATAATCGGAGTTCCACCATCCGGACTAACTCCGAGCTCAGGCGTTTCCAGCTCTC
CGTAGCCTTCCTGAAATCGGACTGGTCTCATTCCCAGTCCCTTGACGTCTGTTCCAGAAAGCCG
GCGTCCTGTTGCACAAATGCCCCACCTAGGGCCCCTGCGCTGTAGGACCTGGGCTGCACTACTC
GGCCAACTCCTGCGACCTCCCCGCACTGTGTGCAACCGGGCGGTCGGCTGTCATAGCCAGGTTG
CGAAGGCAGTGTTAACATCTGAGCAACTGAAACCACATCAACAAAAACCAAATTTTATCATCAA
GGTTCCAAAGGAAATGCTCACCGAGAAGTATGAAGACAACTTCGGCCTCATGTATGATTTGGAG
GATCAAGGTGGGGAGTTGCTGTCTCTGCGCTATGACCTTACTGTCCCTTTTGCTCGCTATCTGG
CCATGAATAAATTGAAGAGGATGAAACGGTATCAAGTGGGAAAGGTGTGGAGGCGAGAGAGTCC
AGCTATAGTCCAGGGCCGCTACCGGGAGTTCTGCCAGTGTGATTTTGACATTGCTGGTGAGTTT
GACCCAATGATCCCTGATGCAGAGTGTTTGAGGATTATGTGTGAAATCCTAAGTGGATTGCAGC
TGGGGGACTTTCTCATTAAGGTAAATGACCGTCGGGTTGTAGACGGGATGTTTGCTGTCTGTGG
TGTTCCTGAGAGCAAGTTCCGTACCATCTGCTCCTCAATGGACAAACTAGACAAGATGTCTTGG
GAAGATGTGAGACTTGAGATGGTGGCAGGGAAAGGCCTAGCTCCTGAGGTGGCTGATCGAATTG
GGGACTACGTCCAATGCCATGGGGGGATATCCCTGGTAGAGGAGCTGTTCAAGGATCCCAGACT
GTCCCAAAGCCAGCTGGCCTTGCAGGGCCTAGGGGACCTGAAGCTGCTCTTTGAATACCTGAGG
TTATTTGGAATTGCCGATAAGATCTCCCTTGATCTGAGTCTGGCCCGGGGCCTGGACTATTATA
CAGGAGTCATTTATGAAGCAGTACTGCTAGAGTCTCCAGCTCAGGCCGGAAAGGAGACTCTGAA
TGTGGGTAGTGTGGCTGCTGGTGGGCGCTATGACAGGCTGGTAGCCCAGTTTGATCCCAAGGGA
CATAGCGTGCCTTGTGTGGGGTTGAGCATTGGAGTAGAGAGAATCTTCTATCTTGTGGAGCAGA
AGATGAAGATTTCTTGTGAGAAGGTTCGAACCACAGAGACCCAAGTGTTTGTGGCCACGCCCCA
GAAGAACTTCCTCCAAGAGCGTTTGAAGATAATTGCACAGCTTTGGGATGCAGGGATCAAGGCA
GAGATGCTTTATAAAAACAACCCTAAACTGTTAACCCAGCTGCACTATTGTGAGAAAGAAGACA
TTCCTCTAATGGTCATTATTGGTGAGCAAGAACAGAATGAAGGTGTCGTCAAGCTCCGTTCAGT
GGCCAGCAGAGAAGAAGTGACCGTTAATCGAGAAAGTCTTGTGGCTGAAATTCAGAAGCGACTG
TCTGAGTCTTGATTAGTGCCTGATTTCCATCTGCTGCTCTTAGAAGAAAAGTTTTCAGCTAGAA
CCAAGTTCTGACAGACTTTACCCAAGTTGGCCAGCATGGATTTTGTACAAGTGCCTTCTGCTTC
TATTCTCTCCTGGATACAGAGCTACAGAAGGACCTGAGGACTCGTGGACTAACATTAGCAGCTG
CTCTGTTAGAATGCACATGGCTGTCATGCCAAAGAGGCATCCTGTAGCTGCAAAGGCAGATCTA
AAGTGCCTCTGAATTCTGTCAAAGGGATGTTAGGATGGTTGCTATGAGAAAAGCTCTGGAAGGG
TTAGTTGCCTAAGGCTAAGACTCTGACCCATTGAAATGAGAAGCTAATATGTACTTCACTTTTG
ACTGTAGCTTAGGAACCAGATTCTGGAGAATTTGTCTACATCAACTATGGGTTGTCCATGGAGT
TACATGGACAGTAGGAATGGACAGAAAAAAGAGATGCTATACCAAGGGCCCAGCAGTGCATCTG
TTGGTTCTTCCAGTTAACAGTAGAAGGTTGGGCTACTTCATAATTTTGAACATTGAACTTAATG
GATGATAAGTTAGTGATCTGCTCTTTTGAGGTTTTGAACACCATTCCATTTGTTATAGTAATTT
TTCTGGATTATTCCATATCCTGCTCTGGAGATTGTTCTAGAAGTGGTTATATGATAGGTTACAT
TTCAAAAATGTACTAGTGGGCTGCAGAGATGGCTCACTGATTAAGGGGGCATATTGCTTTTCCA
GAGGCCCTGAGTTCAGTTCCTAGCAACCACATCAGAGTGATTACAACTGCCTGTAACTCCAGTA
ACAGTTATCTGAGGCCCTCTTCTGGCCTCCACAAACACCTGCACTTAATGTGCACATACTTATG
CACAGACACATACATATAATTAAGAATAAAATAATTTTAAAAAATAAACACACTTTGAGTAATT
TGTCACCGAAGGATTAATCTGTGTAGGCTTTAGGAAATGTTTGAGTGTAATTTGGAGAATCGTG
TGAGTTACGAGTAACCTACCCTGGGGCCCACATGGTAGAAGAAGAGACAGATTTTCTTGTTTGT
CCTCTGGCCTCTACCCACTTACCATGACTTGTAAAGCACACACGCAGGCTTATATACAAAATAA
AGTATAAAAGACAAAACAACCCACCAAAACACCAACATCAAGTGTGGCTACGGACATGGCTCTC
TTGATAGAATGTCTGCCTAGCACCTGGGAAGTGAAGCAAGAGATCAGAAGTTCAAAGTCAGCTT
TGGCGCCAGGCAAGGTGGCACAGGACTTTAATCCTAGTCCAAGGGAAGTAAAGACAGGCCAATT
ATCTGTGTTGTAGGTTAGCCATGGCTACATAGTGAAACCCTGTATAAAAATTCATTCAGCCTTG
GGTTTACATGAGATGCTATGTCAATAAAACAAAAGAAAAACCCTT

hide sequence

RefSeq Acc Id:

XM_039096863 ⟹ XP_038952791

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	28,401,613 - 28,408,075 (+)	NCBI

RefSeq Acc Id:

XM_039096864 ⟹ XP_038952792

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	28,399,022 - 28,408,075 (+)	NCBI

RefSeq Acc Id:

XR_005496038

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	28,398,790 - 28,405,989 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001014034	(Get FASTA)	NCBI Sequence Viewer
	XP_006254637	(Get FASTA)	NCBI Sequence Viewer
	XP_038952791	(Get FASTA)	NCBI Sequence Viewer
	XP_038952792	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89973	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001014034 ⟸ NM_001014012

- UniProtKB:

F1M9C9 (UniProtKB/TrEMBL), Q5EB72 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPHLGPLRCRTWAALLGQLLRPPRTVCNRAVGCHSQVAKAVLTSEQLKPHQQKPNFIIKVPKGT
RDLSPQQMVVREKILDKIISCFKRHGAKGLDTPAFELKEMLTEKYEDNFGLMYDLEDQGGELLS
LRYDLTVPFARYLAMNKLKRMKRYQVGKVWRRESPAIVQGRYREFCQCDFDIAGEFDPMIPDAE
CLRIMCEILSGLQLGDFLIKVNDRRVVDGMFAVCGVPESKFRTICSSMDKLDKMSWEDVRLEMV
AGKGLAPEVADRIGDYVQCHGGISLVEELFKDPRLSQSQLALQGLGDLKLLFEYLRLFGIADKI
SLDLSLARGLDYYTGVIYEAVLLESPAQAGKETLNVGSVAAGGRYDRLVAQFDPKGHSVPCVGL
SIGVERIFYLVEQKMKISCEKVRTTETQVFVATPQKNFLQERLKIIAQLWDAGIKAEMLYKNNP
KLLTQLHYCEKEDIPLMVIIGEQEQNEGVVKLRSVASREEVTVNRESLVAEIQKRLSES

hide sequence

RefSeq Acc Id:	XP_006254637 ⟸ XM_006254575
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZM00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPHLGPLRCRTWAALLGQLLRPPRTVCNRAVGCHSQVAKAVLTSEQLKPHQQKPNFIIKVPKEM LTEKYEDNFGLMYDLEDQGGELLSLRYDLTVPFARYLAMNKLKRMKRYQVGKVWRRESPAIVQG RYREFCQCDFDIAGEFDPMIPDAECLRIMCEILSGLQLGDFLIKVNDRRVVDGMFAVCGVPESK FRTICSSMDKLDKMSWEDVRLEMVAGKGLAPEVADRIGDYVQCHGGISLVEELFKDPRLSQSQL ALQGLGDLKLLFEYLRLFGIADKISLDLSLARGLDYYTGVIYEAVLLESPAQAGKETLNVGSVA AGGRYDRLVAQFDPKGHSVPCVGLSIGVERIFYLVEQKMKISCEKVRTTETQVFVATPQKNFLQ ERLKIIAQLWDAGIKAEMLYKNNPKLLTQLHYCEKEDIPLMVIIGEQEQNEGVVKLRSVASREE VTVNRESLVAEIQKRLSES hide sequence

RefSeq Acc Id:

ENSRNOP00000021797 ⟸ ENSRNOT00000021797

RefSeq Acc Id:	XP_038952792 ⟸ XM_039096864
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038952791 ⟸ XM_039096863
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000085665 ⟸ ENSRNOT00000112291

RefSeq Acc Id:

ENSRNOP00000078926 ⟸ ENSRNOT00000095646

RefSeq Acc Id:

ENSRNOP00000090091 ⟸ ENSRNOT00000104252

RefSeq Acc Id:

ENSRNOP00000021516 ⟸ ENSRNOT00000021516

RefSeq Acc Id:

ENSRNOP00000085580 ⟸ ENSRNOT00000097043

Protein Domains

Aminoacyl-transfer RNA synthetases class-II family Anticodon-binding Class II Histidinyl-tRNA synthetase (HisRS)-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M9C9-F1-model_v2	AlphaFold	F1M9C9	1-507	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700731

Promoter ID:

EPDNEW_R11255

Type:

multiple initiation site

Name:

Hars2_1

Description:

histidyl-tRNA synthetase 2, mitochondrial

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	29,629,210 - 29,629,270	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308426	AgrOrtholog
BioCyc Gene	G2FUF-7855	BioCyc
BioCyc Pathway	TRNA-CHARGING-PWY [tRNA charging]	BioCyc
Ensembl Genes	ENSRNOG00000016087	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000021797	ENTREZGENE
	ENSRNOP00000021797.3	UniProtKB/TrEMBL
	ENSRNOP00000078926	ENTREZGENE
	ENSRNOP00000078926.1	UniProtKB/TrEMBL
	ENSRNOP00000085580.1	UniProtKB/TrEMBL
	ENSRNOP00000085665.1	UniProtKB/TrEMBL
	ENSRNOP00000090091.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021797	ENTREZGENE
	ENSRNOT00000021797.6	UniProtKB/TrEMBL
	ENSRNOT00000095646	ENTREZGENE
	ENSRNOT00000095646.1	UniProtKB/TrEMBL
	ENSRNOT00000097043.1	UniProtKB/TrEMBL
	ENSRNOT00000104252.1	UniProtKB/TrEMBL
	ENSRNOT00000112291.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.800	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7316402	IMAGE-MGC_LOAD
InterPro	aa-tRNA-synth_II	UniProtKB/TrEMBL
	aa-tRNA-synth_II/BPL/LPL	UniProtKB/TrEMBL
	Anticodon-bd	UniProtKB/TrEMBL
	Anticodon-bd_dom_sf	UniProtKB/TrEMBL
	His-tRNA-ligase	UniProtKB/TrEMBL
	His-tRNA_synth_IIA	UniProtKB/TrEMBL
	HisRS-like_core	UniProtKB/TrEMBL
	HisRS_anticodon	UniProtKB/TrEMBL
	Matrin/U1-like-C_Znf_C2H2	UniProtKB/TrEMBL
	Znf_C2H2_jaz	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:307491	UniProtKB/TrEMBL
MGC_CLONE	MGC:109366	IMAGE-MGC_LOAD
NCBI Gene	307491	ENTREZGENE
PANTHER	HISTIDINE--TRNA LIGASE, MITOCHONDRIAL	UniProtKB/TrEMBL
	HISTIDYL-TRNA SYNTHETASE	UniProtKB/TrEMBL
Pfam	HGTP_anticodon	UniProtKB/TrEMBL
	tRNA-synt_His	UniProtKB/TrEMBL
	zf-C2H2_jaz	UniProtKB/TrEMBL
PhenoGen	Hars2	PhenoGen
PIRSF	His-tRNA_synth	UniProtKB/TrEMBL
PROSITE	AA_TRNA_LIGASE_II	UniProtKB/TrEMBL
SMART	ZnF_U1	UniProtKB/TrEMBL
Superfamily-SCOP	Class II aaRS ABD-related	UniProtKB/TrEMBL
	SSF55681	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
TIGRFAMs	hisS	UniProtKB/TrEMBL
UniProt	A0A8I5ZM00	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A401_RAT	UniProtKB/TrEMBL
	A0A8I6AB48_RAT	UniProtKB/TrEMBL
	A0A8I6GD20_RAT	UniProtKB/TrEMBL
	F1M9C9	ENTREZGENE, UniProtKB/TrEMBL
	Q5EB72	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-27	Hars2	histidyl-tRNA synthetase 2, mitochondrial	Hars2	histidyl-tRNA synthetase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-02	Hars2	histidyl-tRNA synthetase 2	Hars2	histidyl-tRNA synthetase 2, mitochondrial	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-25	Hars2	histidyl-tRNA synthetase 2, mitochondrial	Hars2	histidyl-tRNA synthetase 2, mitochondrial (putative)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-16	Hars2	histidyl-tRNA synthetase 2, mitochondrial (putative)	Hars2l	histidyl-tRNA synthetase 2-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-13	Hars2l	histidyl-tRNA synthetase 2-like	Zmat2	zinc finger, matrin type 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Zmat2	zinc finger, matrin type 2	RGD1308426	similar to histidyl-tRNA synthetase-like	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1308426	similar to histidyl-tRNA synthetase-like	RGD1308426_predicted	similar to histidyl-tRNA synthetase-like (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1308426_predicted	similar to histidyl-tRNA synthetase-like (predicted)	LOC307491_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307491_predicted	similar to histidyl-tRNA synthetase-like (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Imported Annotations - SMPDB