Apc (APC regulator of WNT signaling pathway) - Rat Genome Database

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Gene: Apc (APC regulator of WNT signaling pathway) Rattus norvegicus
Analyze
Symbol: Apc
Name: APC regulator of WNT signaling pathway
RGD ID: 2123
Description: Enables microtubule binding activity. Involved in several processes, including cellular response to nerve growth factor stimulus; negative regulation of cardiac muscle cell proliferation; and regulation of glutamate metabolic process. Located in several cellular components, including axonal growth cone; cell body fiber; and lateral plasma membrane. Part of protein-containing complex. Colocalizes with neuron projection and synapse. Used to study anemia; colon adenocarcinoma; colon cancer; and familial adenomatous polyposis. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); familial adenomatous polyposis 1; gastrointestinal system cancer (multiple); hereditary desmoid disease; and reproductive organ cancer (multiple). Orthologous to human APC (APC regulator of WNT signaling pathway); PARTICIPATES IN altered Wnt signaling, canonical pathway; colorectal cancer pathway; endometrial cancer pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: adenomatosis polyposis coli; adenomatous polyposis coli protein; APC, WNT signaling pathway regulator; RATAPC; WNT signaling pathway regulator
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: ApcPirc   Apcm1Kyo  
Genetic Models: F344-ApcPirc/Uwm ACI.F344-ApcPircUwm BN.F344-ApcPirc F344-Apcm1Kyo
Is Marker For: Strains:   F344-Apcm1Kyo  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21825,828,558 - 25,925,511 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1825,864,222 - 25,922,696 (+)Ensembl
Rnor_6.01827,011,710 - 27,106,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,047,382 - 27,105,531 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01826,725,560 - 26,820,837 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41826,732,147 - 26,790,383 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11826,758,792 - 26,817,029 (+)NCBI
Celera1825,606,119 - 25,663,749 (+)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Aberrant Crypt Foci  (ISO)
acinar cell carcinoma  (ISO)
adenocarcinoma  (ISO)
adenoma  (ISO)
Adenomatous Polyps  (ISO)
adult respiratory distress syndrome  (ISO)
Aggressive Fibromatosis  (ISO)
Alzheimer's disease  (ISO)
amenorrhea  (ISO)
anemia  (IMP)
Animal Mammary Neoplasms  (ISO)
ascending colon cancer  (ISO)
Attenuated Adenomatous Polyposis Coli  (ISO)
autistic disorder  (ISO)
breast cancer  (ISO,ISS)
Breast Cancer, Familial  (ISO)
breast carcinoma  (ISO)
cholangiocarcinoma  (ISO)
colon adenocarcinoma  (IMP,ISO)
colon cancer  (IAGP,ISO)
colon carcinoma  (ISO)
Colonic Neoplasms  (IMP,ISO)
Colonic Polyps  (IMP)
colorectal adenoma  (ISO)
colorectal cancer  (ISO)
Colorectal Neoplasms  (ISO)
craniopharyngioma  (ISO)
Digestive System Neoplasms  (ISO)
disease of cellular proliferation  (ISO)
duodenum adenocarcinoma  (ISO)
endometrial cancer  (ISO)
endometrial carcinoma  (ISO)
Endometrial Neoplasms  (ISO)
Endometrioid Carcinomas  (ISO)
Eye Abnormalities  (ISO)
familial adenomatous polyposis  (IMP,ISO)
familial adenomatous polyposis 1  (ISO)
familial hyperlipidemia  (ISO)
Fibromatosis, Abdominal  (ISO)
gallbladder cancer  (ISO)
Gallbladder Neoplasms  (ISO)
Gardner Syndrome  (ISO)
Gastric Adenocarcinoma and Proximal Polyposis of the Stomach  (ISO)
Gastrointestinal Hemorrhage  (ISO)
Gastrointestinal Neoplasms  (ISO)
gastrointestinal stromal tumor  (ISO)
glioblastoma  (ISO)
hepatoblastoma  (ISO)
hepatocellular carcinoma  (ISO)
hereditary desmoid disease  (ISO)
Hereditary Neoplastic Syndromes  (ISO)
Hyperplasia  (ISO)
inflammatory bowel disease  (ISO)
intellectual disability  (ISO)
Intestinal Neoplasms  (IMP,ISO)
Intestinal Polyps  (ISO)
intrahepatic cholangiocarcinoma  (ISO)
Jaw Neoplasms  (IMP)
Klatskin's tumor  (ISO)
Leukocytosis  (ISO)
Liver Neoplasms  (ISO)
lung adenocarcinoma  (ISO)
Lung Neoplasms  (ISO)
lung non-small cell carcinoma  (ISO)
Lynch syndrome  (ISO)
macrocytic anemia  (ISO)
medulloblastoma  (ISO)
Mesothelioma  (ISO)
mismatch repair cancer syndrome  (ISO)
Monoclonal B-Cell Lymphocytosis  (ISO)
Neoplastic Cell Transformation  (ISO)
Neurodevelopmental Disorders  (ISO)
ovarian cancer  (ISS)
pancreatic cancer  (ISO)
prostate cancer  (ISO,ISS)
Prostatic Neoplasms  (ISO)
rectal benign neoplasm  (ISO)
rectum adenocarcinoma  (ISO)
renal cell carcinoma  (ISO)
sigmoid colon cancer  (ISO)
sigmoid neoplasm  (ISO)
Splenomegaly  (ISO)
stomach cancer  (ISO)
Stomach Neoplasms  (ISO)
transitional cell carcinoma  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-methyl-3H-imidazo[4,5-f]quinolin-2-amine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
5-aza-2'-deoxycytidine  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (EXP)
bromobenzene  (EXP)
butanal  (ISO)
cadmium dichloride  (ISO)
camptothecin  (ISO)
carmustine  (ISO)
celastrol  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clorgyline  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
curcumin  (ISO)
cypermethrin  (EXP,ISO)
D-glucose  (EXP)
dextran sulfate  (ISO)
dibutyl phthalate  (EXP)
dichlorine  (EXP)
dioxygen  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
ethosuximide  (EXP)
etodolac  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
glucose  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
lutein  (ISO)
malonaldehyde  (ISO)
manganese(II) chloride  (ISO)
metacetamol  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
miconazole  (ISO)
Monobutylphthalate  (EXP)
N,N-diethyl-m-toluamide  (EXP)
N-ethyl-N-nitrosourea  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
nickel dichloride  (EXP)
ozone  (EXP)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
PhIP  (EXP,ISO)
pirinixic acid  (ISO)
Pyridostigmine bromide  (EXP)
quercetin  (ISO)
resorcinol  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (ISO)
sulindac  (EXP)
tamibarotene  (ISO)
temozolomide  (ISO)
theaflavin  (ISO)
thimerosal  (ISO)
tipifarnib  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
acinar cell proliferation  (ISO)
anterior/posterior pattern specification  (ISO)
apoptotic process  (ISO)
axis specification  (ISO)
axonogenesis  (ISO)
canonical Wnt signaling pathway  (ISO)
canonical Wnt signaling pathway involved in negative regulation of apoptotic process  (ISO)
canonical Wnt signaling pathway involved in positive regulation of apoptotic process  (ISO)
cell adhesion  (ISO)
cell division  (ISO)
cell fate specification  (IBA)
cell migration  (IBA,IEA,ISO,ISS)
cell population proliferation  (ISO)
cellular component organization  (IEA)
cellular response to DNA damage stimulus  (IEA,ISO,ISS)
cellular response to nerve growth factor stimulus  (IEP)
chromosome organization  (ISO)
cytoplasmic microtubule organization  (ISO)
dorsal/ventral pattern formation  (ISO)
endothelial cell proliferation  (ISO)
epithelial cell apoptotic process  (ISO)
epithelial cell proliferation  (ISO)
epithelial cell proliferation involved in prostate gland development  (ISO)
establishment or maintenance of cell polarity  (IDA)
fibroblast apoptotic process  (ISO)
fibroblast migration  (ISO)
hair follicle development  (ISO)
insulin receptor signaling pathway  (IEA,ISO)
kidney development  (ISO)
MAPK cascade  (ISO)
metaphase/anaphase transition of mitotic cell cycle  (ISO)
microtubule depolymerization  (ISO)
microtubule polymerization  (ISO)
mitotic cytokinesis  (IEA,ISO)
mitotic spindle assembly checkpoint signaling  (IEA,ISO)
muscle cell cellular homeostasis  (ISO)
negative regulation of acinar cell proliferation  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of canonical Wnt signaling pathway  (IBA,IEA,ISO)
negative regulation of cardiac muscle cell proliferation  (IMP)
negative regulation of cell cycle G1/S phase transition  (ISO,ISS)
negative regulation of cell population proliferation  (IEA,ISO,ISS)
negative regulation of cyclin-dependent protein serine/threonine kinase activity  (IEA,ISO,ISS)
negative regulation of endothelial cell proliferation  (ISO)
negative regulation of epithelial cell apoptotic process  (ISO)
negative regulation of epithelial cell proliferation  (ISO)
negative regulation of epithelial cell proliferation involved in prostate gland development  (ISO)
negative regulation of G1/S transition of mitotic cell cycle  (IEA,ISO)
negative regulation of MAPK cascade  (ISO)
negative regulation of microtubule depolymerization  (IBA,IEA,ISO,ISS)
negative regulation of odontogenesis  (ISO)
negative regulation of Wnt signaling pathway  (IEA,ISO)
nervous system development  (IBA)
neuron projection development  (IMP)
odontogenesis  (ISO)
pancreas development  (IEP)
pattern specification process  (IBA,ISO)
positive regulation of apoptotic process  (IEA,ISO)
positive regulation of cell adhesion  (ISO)
positive regulation of cell death  (ISO)
positive regulation of cell differentiation  (ISO)
positive regulation of cell division  (ISO)
positive regulation of cell migration  (IEA,ISO)
positive regulation of cold-induced thermogenesis  (ISO,ISS)
positive regulation of fibroblast apoptotic process  (ISO)
positive regulation of fibroblast migration  (ISO)
positive regulation of microtubule polymerization  (ISO)
positive regulation of protein catabolic process  (IBA,IEA,ISO)
positive regulation of protein localization to centrosome  (IEA,ISO)
positive regulation of pseudopodium assembly  (IEA,ISO)
protein catabolic process  (ISO)
protein-containing complex assembly  (IEA,ISO,ISS)
proximal/distal pattern formation  (ISO)
regulation of attachment of spindle microtubules to kinetochore  (IEA,ISO)
regulation of cell cycle  (IEA,ISO)
regulation of cell differentiation  (IBA,ISO)
regulation of cell migration  (ISO)
regulation of epithelial cell differentiation  (ISO)
regulation of epithelial cell migration  (ISO)
regulation of glutamate metabolic process  (IDA)
regulation of microtubule-based process  (IEA,ISO,ISS)
regulation of nitrogen compound metabolic process  (ISO)
regulation of osteoblast differentiation  (ISO)
regulation of osteoclast differentiation  (ISO)
response to alcohol  (IEP)
response to xenobiotic stimulus  (IEP)
retina development in camera-type eye  (ISO)
skin development  (ISO)
somatic stem cell population maintenance  (ISO)
stem cell population maintenance  (ISO)
T cell differentiation in thymus  (ISO)
thymus development  (ISO)
Wnt signaling pathway  (IEA,ISO)

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
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Additional References at PubMed
PMID:1541640   PMID:7806582   PMID:7890674   PMID:7954428   PMID:8521819   PMID:8563176   PMID:8638126   PMID:8670282   PMID:8945508   PMID:8978062   PMID:8978063   PMID:8988060  
PMID:9037065   PMID:9060821   PMID:9135000   PMID:9159163   PMID:9288104   PMID:9371501   PMID:9453487   PMID:9506519   PMID:9515784   PMID:9601641   PMID:9707618   PMID:9771477  
PMID:9865728   PMID:9927046   PMID:10334197   PMID:10346819   PMID:10451698   PMID:10506110   PMID:10535960   PMID:10626800   PMID:10708962   PMID:10716720   PMID:10773885   PMID:10783317  
PMID:10919675   PMID:10951583   PMID:10969066   PMID:10982921   PMID:10987272   PMID:11035805   PMID:11166179   PMID:11197776   PMID:11245490   PMID:11274413   PMID:11283619   PMID:11309311  
PMID:11381263   PMID:11385109   PMID:11478486   PMID:11533658   PMID:11533709   PMID:11559569   PMID:11606502   PMID:11731407   PMID:11756652   PMID:11773073   PMID:11809702   PMID:11972058  
PMID:12072559   PMID:12370429   PMID:12645927   PMID:12874278   PMID:12952940   PMID:12955080   PMID:14728717   PMID:14758356   PMID:15198980   PMID:15207235   PMID:15314168   PMID:15380519  
PMID:15550389   PMID:15556865   PMID:15563600   PMID:15684064   PMID:15767571   PMID:15802266   PMID:15958588   PMID:16007074   PMID:16025118   PMID:16188939   PMID:16368433   PMID:16478791  
PMID:16525027   PMID:16611247   PMID:16621792   PMID:16638711   PMID:16641100   PMID:16709231   PMID:16740478   PMID:16753179   PMID:16815997   PMID:16887818   PMID:16950562   PMID:17002498  
PMID:17192415   PMID:17200209   PMID:17227893   PMID:17299058   PMID:17363566   PMID:17371273   PMID:17377531   PMID:17570218   PMID:17615359   PMID:17671182   PMID:17681179   PMID:17875695  
PMID:17893240   PMID:17893885   PMID:17956267   PMID:17989230   PMID:18056981   PMID:18076571   PMID:18258607   PMID:18281465   PMID:18464259   PMID:18485889   PMID:18502210   PMID:18644872  
PMID:18656477   PMID:18716223   PMID:18719115   PMID:18725524   PMID:19151759   PMID:19632184   PMID:20623542   PMID:20937854   PMID:21471006   PMID:22898821   PMID:23382461   PMID:23395091  
PMID:25036633   PMID:26658992   PMID:28057765   PMID:30934153   PMID:34003864  


Genomics

Candidate Gene Status
Apc is a candidate Gene for QTL Colcr3
Comparative Map Data
Apc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21825,828,558 - 25,925,511 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1825,864,222 - 25,922,696 (+)Ensembl
Rnor_6.01827,011,710 - 27,106,323 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,047,382 - 27,105,531 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01826,725,560 - 26,820,837 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41826,732,147 - 26,790,383 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11826,758,792 - 26,817,029 (+)NCBI
Celera1825,606,119 - 25,663,749 (+)NCBICelera
Cytogenetic Map18p12NCBI
APC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385112,707,498 - 112,846,239 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl5112,707,498 - 112,846,239 (+)EnsemblGRCh38hg38GRCh38
GRCh375112,043,195 - 112,181,936 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365112,101,483 - 112,209,835 (+)NCBINCBI36hg18NCBI36
Build 345112,101,482 - 112,209,834NCBI
Celera5107,988,802 - 108,127,503 (+)NCBI
Cytogenetic Map5q22.2NCBI
HuRef5107,222,330 - 107,361,030 (+)NCBIHuRef
CHM1_15111,476,576 - 111,615,241 (+)NCBICHM1_1
Apc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,353,350 - 34,455,243 (+)NCBIGRCm39mm39
GRCm39 Ensembl1834,353,977 - 34,455,605 (+)Ensembl
GRCm381834,220,297 - 34,322,190 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,220,924 - 34,322,552 (+)EnsemblGRCm38mm10GRCm38
MGSCv371834,380,638 - 34,481,844 (+)NCBIGRCm37mm9NCBIm37
MGSCv361834,385,824 - 34,443,409 (+)NCBImm8
Celera1834,670,234 - 34,773,431 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.53NCBI
Apc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,566,975 - 2,674,832 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,567,804 - 2,675,062 (-)NCBIChiLan1.0ChiLan1.0
APC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15113,873,993 - 114,009,709 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5113,904,352 - 114,009,709 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05108,070,697 - 108,208,273 (+)NCBIMhudiblu_PPA_v0panPan3
APC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13252,052 - 380,506 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3253,081 - 322,993 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha31,652,296 - 1,781,970 (-)NCBI
ROS_Cfam_1.0393,843 - 224,101 (-)NCBI
ROS_Cfam_1.0 Ensembl394,206 - 190,576 (-)Ensembl
UMICH_Zoey_3.1386,997 - 217,003 (-)NCBI
UNSW_CanFamBas_1.0386,045 - 214,151 (-)NCBI
UU_Cfam_GSD_1.03249,524 - 377,618 (-)NCBI
Apc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,592,489 - 154,711,938 (-)NCBI
SpeTri2.0NW_0049365316,899,580 - 7,019,016 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2116,812,582 - 117,034,912 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12116,913,354 - 116,985,303 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22121,515,522 - 121,573,844 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12315,992,437 - 16,135,117 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2316,042,287 - 16,137,067 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603462,320,613 - 62,469,122 (-)NCBIVero_WHO_p1.0
Apc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474330,517,034 - 30,635,740 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
PMC122454P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,918,112 - 25,918,430 (+)MAPPERmRatBN7.2
Rnor_6.01827,101,582 - 27,101,899NCBIRnor6.0
Rnor_5.01826,815,121 - 26,815,438UniSTSRnor5.0
RGSC_v3.41826,786,632 - 26,786,949UniSTSRGSC3.4
Celera1825,659,998 - 25,660,315UniSTS
Cytogenetic Map18p12UniSTS
RH138935  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,871,434 - 25,872,299 (+)MAPPERmRatBN7.2
Rnor_6.01827,054,594 - 27,055,458NCBIRnor6.0
Rnor_5.01826,768,424 - 26,769,288UniSTSRnor5.0
RGSC_v3.41826,739,361 - 26,740,225UniSTSRGSC3.4
Celera1825,613,340 - 25,614,204UniSTS
RH 3.4 Map18364.1UniSTS
Cytogenetic Map18p12UniSTS
Apc  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,915,866 - 25,916,194 (+)MAPPERmRatBN7.2
Rnor_6.01827,099,336 - 27,099,663NCBIRnor6.0
Rnor_5.01826,812,875 - 26,813,202UniSTSRnor5.0
RGSC_v3.41826,784,386 - 26,784,713UniSTSRGSC3.4
Celera1825,657,752 - 25,658,079UniSTS
Cytogenetic Map18p12UniSTS
UniSTS:237769  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21825,920,013 - 25,920,121 (+)MAPPERmRatBN7.2
Rnor_6.01827,103,483 - 27,103,590NCBIRnor6.0
Rnor_5.01826,817,022 - 26,817,129UniSTSRnor5.0
RGSC_v3.41826,788,533 - 26,788,640UniSTSRGSC3.4
Celera1825,661,899 - 25,662,006UniSTS
Cytogenetic Map18p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1331735Rf44Renal function QTL 442.981total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat


Related Rat Strains
The following Strains have been annotated to Apc


Genetic Models
This gene Apc is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:143
Count of miRNA genes:112
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000027691
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 34 30 14 19 14 7 7 74 35 36 11 7
Low 1 9 27 27 27 1 4 5 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB071148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB071693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000027691   ⟹   ENSRNOP00000027691
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1825,864,222 - 25,922,696 (+)Ensembl
Rnor_6.0 Ensembl1827,047,382 - 27,105,333 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090264   ⟹   ENSRNOP00000074593
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1825,864,222 - 25,922,696 (+)Ensembl
Rnor_6.0 Ensembl1827,047,418 - 27,105,531 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102176   ⟹   ENSRNOP00000080591
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1825,864,222 - 25,922,696 (+)Ensembl
RefSeq Acc Id: NM_012499   ⟹   NP_036631
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,864,222 - 25,921,864 (+)NCBI
Rnor_6.01827,047,382 - 27,105,333 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
RGSC_v3.41826,732,147 - 26,790,383 (+)RGD
Celera1825,606,119 - 25,663,749 (+)RGD
Sequence:
RefSeq Acc Id: XM_006254506   ⟹   XP_006254568
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,558 - 25,925,511 (+)NCBI
Rnor_6.01827,011,710 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254508   ⟹   XP_006254570
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,809 - 25,921,864 (+)NCBI
Rnor_6.01827,012,016 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254509   ⟹   XP_006254571
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,853,348 - 25,921,864 (+)NCBI
Rnor_6.01827,036,537 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254510   ⟹   XP_006254572
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,559 - 25,925,511 (+)NCBI
Rnor_6.01827,011,711 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254511   ⟹   XP_006254573
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,809 - 25,925,511 (+)NCBI
Rnor_6.01827,012,016 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254512   ⟹   XP_006254574
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,853,400 - 25,921,864 (+)NCBI
Rnor_6.01827,035,778 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254513   ⟹   XP_006254575
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,558 - 25,925,511 (+)NCBI
Rnor_6.01827,011,710 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254518   ⟹   XP_006254580
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,864,270 - 25,921,864 (+)NCBI
Rnor_6.01827,051,857 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254520   ⟹   XP_006254582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,558 - 25,925,511 (+)NCBI
Rnor_6.01827,011,710 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254521   ⟹   XP_006254583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,809 - 25,925,511 (+)NCBI
Rnor_6.01827,012,016 - 27,106,323 (+)NCBI
Rnor_5.01826,725,560 - 26,820,837 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600836   ⟹   XP_017456325
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,864,270 - 25,921,864 (+)NCBI
Rnor_6.01827,047,480 - 27,106,323 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600837   ⟹   XP_017456326
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,853,362 - 25,921,864 (+)NCBI
Rnor_6.01827,036,550 - 27,106,323 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600838   ⟹   XP_017456327
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,820 - 25,921,864 (+)NCBI
Rnor_6.01827,012,024 - 27,106,323 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096560   ⟹   XP_038952488
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,854,637 - 25,921,864 (+)NCBI
RefSeq Acc Id: XM_039096562   ⟹   XP_038952490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,854,629 - 25,921,864 (+)NCBI
RefSeq Acc Id: XM_039096563   ⟹   XP_038952491
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,559 - 25,925,511 (+)NCBI
RefSeq Acc Id: XM_039096564   ⟹   XP_038952492
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21825,828,558 - 25,925,511 (+)NCBI
Protein Sequences
Protein RefSeqs NP_036631 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254568 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254570 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254571 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254572 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254573 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254574 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254575 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254580 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254582 (Get FASTA)   NCBI Sequence Viewer  
  XP_006254583 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456325 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456326 (Get FASTA)   NCBI Sequence Viewer  
  XP_017456327 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952488 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952490 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952491 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952492 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA07609 (Get FASTA)   NCBI Sequence Viewer  
  BAB68311 (Get FASTA)   NCBI Sequence Viewer  
  EDL76212 (Get FASTA)   NCBI Sequence Viewer  
  EDL76213 (Get FASTA)   NCBI Sequence Viewer  
  EDL76214 (Get FASTA)   NCBI Sequence Viewer  
  EDL76215 (Get FASTA)   NCBI Sequence Viewer  
  EDL76216 (Get FASTA)   NCBI Sequence Viewer  
  EDL76217 (Get FASTA)   NCBI Sequence Viewer  
  EDL76218 (Get FASTA)   NCBI Sequence Viewer  
  P70478 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_036631   ⟸   NM_012499
- UniProtKB: P70478 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006254568   ⟸   XM_006254506
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006254572   ⟸   XM_006254510
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006254582   ⟸   XM_006254520
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006254575   ⟸   XM_006254513
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006254570   ⟸   XM_006254508
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K8G0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254573   ⟸   XM_006254511
- Peptide Label: isoform X4
- UniProtKB: G3V8Q9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254583   ⟸   XM_006254521
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006254574   ⟸   XM_006254512
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006254571   ⟸   XM_006254509
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K8G0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254580   ⟸   XM_006254518
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456327   ⟸   XM_017600838
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456326   ⟸   XM_017600837
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456325   ⟸   XM_017600836
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000074593   ⟸   ENSRNOT00000090264
RefSeq Acc Id: ENSRNOP00000027691   ⟸   ENSRNOT00000027691
RefSeq Acc Id: XP_038952492   ⟸   XM_039096564
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038952491   ⟸   XM_039096563
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038952490   ⟸   XM_039096562
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038952488   ⟸   XM_039096560
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000080591   ⟸   ENSRNOT00000102176
Protein Domains
APC_basic   APC_N_CC   EB1_binding

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000