LOC120098426 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120098426 (U6 spliceosomal RNA) Rattus norvegicus
Analyze
Symbol: LOC120098426 (Ensembl: LOC120101136)
Name: U6 spliceosomal RNA
RGD ID: 41350816
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81815,793,273 - 15,793,379 (-)NCBIGRCr8
mRatBN7.21815,518,520 - 15,518,626 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1058,702,564 - 58,702,670 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1085,918,001 - 85,918,107 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1815,518,520 - 15,518,626 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl5129,832,346 - 129,832,452 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1116,655,090 - 16,655,196 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1745,438,594 - 45,438,700 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl6120,492,486 - 120,492,592 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1421,391,651 - 21,391,757 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2224,015,573 - 224,015,679 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1847,142,396 - 47,142,502 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX131,991,651 - 131,991,757 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl950,425,749 - 50,425,855 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl941,123,228 - 41,123,334 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX15,390,052 - 15,390,158 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1576,173,011 - 76,173,117 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl69,344,990 - 9,345,096 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl557,985,035 - 57,985,141 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1630,667,601 - 30,667,707 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl175,938,436 - 75,938,542 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1326,963,303 - 26,963,409 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1648,041,919 - 48,042,025 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl168,791,097 - 68,791,203 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl339,629,133 - 39,629,239 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl434,210,184 - 34,210,290 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3118,319,647 - 118,319,753 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl863,594,040 - 63,594,146 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1741,675,625 - 41,675,731 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl283,782,193 - 83,782,299 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1596,681,691 - 96,681,797 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl282,944,492 - 82,944,598 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl773,233,178 - 73,233,284 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX26,937,453 - 26,937,559 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl836,157,434 - 36,157,540 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1412,026,689 - 12,026,795 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl2228,059,072 - 228,059,178 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl148,330,468 - 8,330,574 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl6104,314,104 - 104,314,210 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl689,930,717 - 89,930,823 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl235,528,616 - 35,528,722 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl5141,522,271 - 141,522,377 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl226,415,389 - 26,415,495 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl141,153,338 - 1,153,444 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl670,813,893 - 70,813,999 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl182,497,262 - 2,497,368 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl772,666,497 - 72,666,603 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1573,008,673 - 73,008,779 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120098426
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005496587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005496587
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81815,793,273 - 15,793,379 (-)NCBI
mRatBN7.21815,518,520 - 15,518,626 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-8158 BioCyc
Ensembl Genes ENSRNOG00000062872 Ensembl
  ENSRNOG00000063323 Ensembl
  ENSRNOG00000063428 Ensembl
  ENSRNOG00000063622 Ensembl
  ENSRNOG00000063963 Ensembl
  ENSRNOG00000064256 Ensembl
  ENSRNOG00000064676 Ensembl
  ENSRNOG00000064804 Ensembl
  ENSRNOG00000065299 Ensembl
  ENSRNOG00000065540 Ensembl
  ENSRNOG00000065588 Ensembl
  ENSRNOG00000065625 Ensembl
  ENSRNOG00000066032 Ensembl
  ENSRNOG00000066053 Ensembl
  ENSRNOG00000066073 Ensembl
  ENSRNOG00000066360 Ensembl
  ENSRNOG00000066819 Ensembl
  ENSRNOG00000066905 Ensembl
  ENSRNOG00000066923 Ensembl
  ENSRNOG00000067206 Ensembl
  ENSRNOG00000067348 Ensembl
  ENSRNOG00000067349 Ensembl
  ENSRNOG00000067418 Ensembl
  ENSRNOG00000067456 Ensembl
  ENSRNOG00000067488 Ensembl
  ENSRNOG00000067580 Ensembl
  ENSRNOG00000067906 Ensembl
  ENSRNOG00000068007 Ensembl
  ENSRNOG00000068385 Ensembl
  ENSRNOG00000068454 Ensembl
  ENSRNOG00000068463 Ensembl
  ENSRNOG00000068558 Ensembl
  ENSRNOG00000068782 Ensembl
  ENSRNOG00000068819 Ensembl
  ENSRNOG00000068957 Ensembl
  ENSRNOG00000069081 Ensembl
  ENSRNOG00000069131 Ensembl
  ENSRNOG00000069228 Ensembl
  ENSRNOG00000069322 Ensembl
  ENSRNOG00000069677 Ensembl
  ENSRNOG00000069745 Ensembl
  ENSRNOG00000069934 Ensembl
  ENSRNOG00000070235 Ensembl
  ENSRNOG00000070552 Ensembl
  ENSRNOG00000070649 Ensembl
  ENSRNOG00000070790 Ensembl
NCBI Gene LOC120098426 ENTREZGENE
PhenoGen LOC120098426 PhenoGen
RatGTEx ENSRNOG00000062872 RatGTEx
  ENSRNOG00000063323 RatGTEx
  ENSRNOG00000063428 RatGTEx
  ENSRNOG00000063622 RatGTEx
  ENSRNOG00000063963 RatGTEx
  ENSRNOG00000064256 RatGTEx
  ENSRNOG00000064676 RatGTEx
  ENSRNOG00000064804 RatGTEx
  ENSRNOG00000065299 RatGTEx
  ENSRNOG00000065540 RatGTEx
  ENSRNOG00000065588 RatGTEx
  ENSRNOG00000065625 RatGTEx
  ENSRNOG00000066032 RatGTEx
  ENSRNOG00000066053 RatGTEx
  ENSRNOG00000066073 RatGTEx
  ENSRNOG00000066360 RatGTEx
  ENSRNOG00000066819 RatGTEx
  ENSRNOG00000066905 RatGTEx
  ENSRNOG00000066923 RatGTEx
  ENSRNOG00000067206 RatGTEx
  ENSRNOG00000067348 RatGTEx
  ENSRNOG00000067349 RatGTEx
  ENSRNOG00000067418 RatGTEx
  ENSRNOG00000067456 RatGTEx
  ENSRNOG00000067488 RatGTEx
  ENSRNOG00000067580 RatGTEx
  ENSRNOG00000067906 RatGTEx
  ENSRNOG00000068007 RatGTEx
  ENSRNOG00000068385 RatGTEx
  ENSRNOG00000068454 RatGTEx
  ENSRNOG00000068463 RatGTEx
  ENSRNOG00000068558 RatGTEx
  ENSRNOG00000068782 RatGTEx
  ENSRNOG00000068819 RatGTEx
  ENSRNOG00000068957 RatGTEx
  ENSRNOG00000069081 RatGTEx
  ENSRNOG00000069131 RatGTEx
  ENSRNOG00000069228 RatGTEx
  ENSRNOG00000069322 RatGTEx
  ENSRNOG00000069677 RatGTEx
  ENSRNOG00000069745 RatGTEx
  ENSRNOG00000069934 RatGTEx
  ENSRNOG00000070235 RatGTEx
  ENSRNOG00000070552 RatGTEx
  ENSRNOG00000070649 RatGTEx
  ENSRNOG00000070790 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120098426  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:150341037 737654 PROVISIONAL
2021-08-31 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-01-27 LOC120098426  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL