Nol4 (nucleolar protein 4) - Rat Genome Database
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Gene: Nol4 (nucleolar protein 4) Rattus norvegicus
Analyze
Symbol: Nol4
Name: nucleolar protein 4
RGD ID: 1310663
Description: Predicted to localize to nucleolus. Orthologous to human NOL4 (nucleolar protein 4); INTERACTS WITH 1,3-dinitrobenzene; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC307553
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
Rnor_6.0 Ensembl1813,658,271 - 14,016,713 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01813,658,260 - 14,016,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01813,441,528 - 13,801,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41814,312,224 - 14,718,842 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11814,340,233 - 14,744,196 (-)NCBI
Celera1813,911,298 - 14,272,965 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)

Molecular Function

References


Genomics

Comparative Map Data
Nol4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
Rnor_6.0 Ensembl1813,658,271 - 14,016,713 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01813,658,260 - 14,016,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01813,441,528 - 13,801,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41814,312,224 - 14,718,842 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11814,340,233 - 14,744,196 (-)NCBI
Celera1813,911,298 - 14,272,965 (-)NCBICelera
Cytogenetic Map18p12NCBI
NOL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1833,851,100 - 34,224,952 (-)EnsemblGRCh38hg38GRCh38
GRCh381833,851,100 - 34,224,957 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371831,431,064 - 31,804,877 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361829,685,062 - 30,057,444 (-)NCBINCBI36hg18NCBI36
Build 341829,686,409 - 30,057,513NCBI
Celera1828,239,387 - 28,611,397 (-)NCBI
Cytogenetic Map18q12.1NCBI
HuRef1828,290,445 - 28,662,648 (-)NCBIHuRef
CHM1_11831,358,224 - 31,730,679 (-)NCBICHM1_1
Nol4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391822,826,209 - 23,174,926 (-)NCBIGRCm39mm39
GRCm39 Ensembl1822,826,238 - 23,174,710 (-)Ensembl
GRCm381822,693,152 - 23,042,640 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1822,693,181 - 23,041,653 (-)EnsemblGRCm38mm10GRCm38
MGSCv371822,851,656 - 23,200,154 (-)NCBIGRCm37mm9NCBIm37
MGSCv361822,836,416 - 23,181,666 (-)NCBImm8
Celera1823,176,162 - 23,536,179 (-)NCBICelera
Cytogenetic Map18A2NCBI
Nol4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540220,780,251 - 21,106,508 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540220,781,485 - 21,106,508 (-)NCBIChiLan1.0ChiLan1.0
NOL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11830,646,179 - 31,025,952 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1830,646,179 - 31,026,620 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01827,054,678 - 27,435,085 (-)NCBIMhudiblu_PPA_v0panPan3
NOL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl755,618,123 - 56,006,041 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1755,617,119 - 56,007,790 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nol4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493651710,668,250 - 10,978,766 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NOL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6117,631,227 - 118,334,105 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16117,631,631 - 118,088,026 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26109,982,552 - 110,275,172 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NOL4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11846,519,566 - 46,901,694 (+)NCBI
ChlSab1.1 Ensembl1846,521,206 - 46,901,764 (+)Ensembl
Nol4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247798,359,844 - 8,687,368 (-)NCBI

Position Markers
D18Rat75  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01813,553,288 - 13,553,458NCBIRnor5.0
Rnor_5.01813,553,288 - 13,553,562NCBIRnor5.0
RGSC_v3.41814,450,293 - 14,450,566RGDRGSC3.4
RGSC_v3.41814,450,293 - 14,450,462RGDRGSC3.4
RGSC_v3.11814,476,939 - 14,477,212RGD
Celera1814,023,452 - 14,023,701UniSTS
RH 3.4 Map18159.6UniSTS
RH 3.4 Map18159.6RGD
RH 2.0 Map18725.8RGD
SHRSP x BN Map185.85RGD
FHH x ACI Map1810.5499RGD
Cytogenetic Map18p12UniSTS
D18Got17  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01813,925,372 - 13,925,538NCBIRnor6.0
Rnor_5.01813,708,383 - 13,708,549UniSTSRnor5.0
RGSC_v3.41814,619,985 - 14,620,152RGDRGSC3.4
RGSC_v3.41814,619,986 - 14,620,152UniSTSRGSC3.4
RGSC_v3.11814,646,632 - 14,646,798RGD
Celera1814,179,060 - 14,179,226UniSTS
RH 3.4 Map18154.3RGD
RH 3.4 Map18154.3UniSTS
RH 2.0 Map18735.1RGD
Cytogenetic Map18p12UniSTS
BB384708  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01813,658,566 - 13,658,666NCBIRnor6.0
Rnor_5.01813,441,831 - 13,441,931UniSTSRnor5.0
RGSC_v3.41814,312,519 - 14,312,619UniSTSRGSC3.4
Celera1813,911,593 - 13,911,693UniSTS
Cytogenetic Map18p12UniSTS
RH142458  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01814,017,334 - 14,017,588NCBIRnor6.0
Rnor_5.01813,801,754 - 13,802,008UniSTSRnor5.0
RGSC_v3.41814,719,579 - 14,719,833UniSTSRGSC3.4
Celera1814,274,119 - 14,274,373UniSTS
RH 3.4 Map18150.7UniSTS
Cytogenetic Map18p12UniSTS
AU047300  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01814,011,089 - 14,011,287NCBIRnor6.0
Rnor_5.01813,795,509 - 13,795,707UniSTSRnor5.0
RGSC_v3.41814,713,218 - 14,713,416UniSTSRGSC3.4
Celera1814,267,341 - 14,267,539UniSTS
Cytogenetic Map18p12UniSTS
RH140952  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01813,903,992 - 13,904,208NCBIRnor6.0
Rnor_5.01813,686,964 - 13,687,180UniSTSRnor5.0
RGSC_v3.41814,598,173 - 14,598,389UniSTSRGSC3.4
Celera1814,157,870 - 14,158,086UniSTS
RH 3.4 Map18167.4UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p12UniSTS
BF390037  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01813,866,869 - 13,867,023NCBIRnor6.0
Rnor_5.01813,649,841 - 13,649,995UniSTSRnor5.0
RGSC_v3.41814,561,511 - 14,561,665UniSTSRGSC3.4
Celera1814,120,595 - 14,120,749UniSTS
RH 3.4 Map18154.4UniSTS
Cytogenetic Map18p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125999214Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125999214Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135097280Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18138195967Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18138195967Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18138753381Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18247709623184414Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18247709623184414Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18371954732487870Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18440751362570466Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18543013441781619Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18705776915274626Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18705776915274626Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18705776915274626Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18705776915274626Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18705776915274626Rat
70178EaezExperimental allergic encephalomyelitis QTL z2.4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)181259717915099007Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:67
Interacting mature miRNAs:67
Transcripts:ENSRNOT00000041125
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64 4
Low 7 8 19 22
Below cutoff 2 6 8 7 1 7 3 3 2 9 14 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000041125   ⟹   ENSRNOP00000038969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1813,658,271 - 14,016,713 (-)Ensembl
RefSeq Acc Id: NM_001107401   ⟹   NP_001100871
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,510 - 14,294,858 (-)NCBI
Rnor_6.01813,658,271 - 14,016,713 (-)NCBI
Rnor_5.01813,441,528 - 13,801,153 (-)NCBI
RGSC_v3.41814,312,224 - 14,718,842 (-)RGD
Celera1813,911,298 - 14,272,965 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254453   ⟹   XP_006254515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
Rnor_6.01813,658,260 - 14,016,699 (-)NCBI
Rnor_5.01813,441,528 - 13,801,153 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600973   ⟹   XP_017456462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,292,941 (-)NCBI
Rnor_6.01813,658,260 - 14,013,896 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600974   ⟹   XP_017456463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,198,915 (-)NCBI
Rnor_6.01813,658,260 - 13,923,807 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600975   ⟹   XP_017456464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,066,313 (-)NCBI
Rnor_6.01813,658,260 - 13,792,648 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096914   ⟹   XP_038952842
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
RefSeq Acc Id: XM_039096915   ⟹   XP_038952843
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,228,180 (-)NCBI
RefSeq Acc Id: XM_039096916   ⟹   XP_038952844
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,015,535 - 14,294,873 (-)NCBI
RefSeq Acc Id: XM_039096917   ⟹   XP_038952845
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,066,308 (-)NCBI
RefSeq Acc Id: XM_039096918   ⟹   XP_038952846
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21813,932,499 - 14,294,873 (-)NCBI
RefSeq Acc Id: XR_005496044
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21814,014,587 - 14,294,873 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100871   ⟸   NM_001107401
- UniProtKB: D4A3P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254515   ⟸   XM_006254453
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017456462   ⟸   XM_017600973
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456463   ⟸   XM_017600974
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017456464   ⟸   XM_017600975
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: ENSRNOP00000038969   ⟸   ENSRNOT00000041125
RefSeq Acc Id: XP_038952842   ⟸   XM_039096914
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038952846   ⟸   XM_039096918
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038952843   ⟸   XM_039096915
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038952845   ⟸   XM_039096917
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038952844   ⟸   XM_039096916
- Peptide Label: isoform X7

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310663 AgrOrtholog
Ensembl Genes ENSRNOG00000014775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000038969 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000041125 ENTREZGENE, UniProtKB/TrEMBL
InterPro NOL4 UniProtKB/TrEMBL
  NOL4/NOL4L UniProtKB/TrEMBL
KEGG Report rno:307553 UniProtKB/TrEMBL
NCBI Gene 307553 ENTREZGENE
PANTHER PTHR12449 UniProtKB/TrEMBL
  PTHR12449:SF17 UniProtKB/TrEMBL
PhenoGen Nol4 PhenoGen
UniProt D4A3P4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Nol4  nucleolar protein 4   Nol4_predicted  nucleolar protein 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Nol4_predicted  nucleolar protein 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED