Cdc23 (cell division cycle 23) - Rat Genome Database

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Gene: Cdc23 (cell division cycle 23) Rattus norvegicus
Analyze
Symbol: Cdc23
Name: cell division cycle 23
RGD ID: 1304819
Description: Predicted to be involved in several processes, including anaphase-promoting complex-dependent catabolic process; positive regulation of mitotic metaphase/anaphase transition; and protein K11-linked ubiquitination. Predicted to be part of anaphase-promoting complex. Orthologous to human CDC23 (cell division cycle 23); PARTICIPATES IN cell cycle pathway, mitotic; ubiquitin/proteasome degradation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2-amino-2-deoxy-D-glucopyranose.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: CDC23 (cell division cycle 23, yeast, homolog); cell division cycle protein 23 homolog; LOC291689
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21826,236,891 - 26,260,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,236,890 - 26,291,163 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,366,147 - 26,385,916 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,129,965 - 27,149,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,464,872 - 26,484,678 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,430,924 - 27,452,569 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,430,905 - 27,452,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,144,282 - 27,168,142 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,108,516 - 27,128,285 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11827,138,237 - 27,154,701 (-)NCBI
Celera1825,976,408 - 25,996,159 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9790767   PMID:12477932   PMID:14657031   PMID:16364912   PMID:18485873   PMID:21926987  


Genomics

Comparative Map Data
Cdc23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21826,236,891 - 26,260,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,236,890 - 26,291,163 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,366,147 - 26,385,916 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,129,965 - 27,149,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,464,872 - 26,484,678 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,430,924 - 27,452,569 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,430,905 - 27,452,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,144,282 - 27,168,142 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,108,516 - 27,128,285 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11827,138,237 - 27,154,701 (-)NCBI
Celera1825,976,408 - 25,996,159 (-)NCBICelera
Cytogenetic Map18p12NCBI
CDC23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,187,650 - 138,213,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,187,650 - 138,213,343 (-)EnsemblGRCh38hg38GRCh38
GRCh375137,523,339 - 137,549,012 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,551,236 - 137,576,931 (-)NCBINCBI36Build 36hg18NCBI36
Build 345137,551,235 - 137,576,918NCBI
Celera5133,644,626 - 133,670,286 (-)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,714,335 - 132,740,003 (-)NCBIHuRef
CHM1_15136,955,960 - 136,981,642 (-)NCBICHM1_1
T2T-CHM13v2.05138,713,942 - 138,739,579 (-)NCBIT2T-CHM13v2.0
Cdc23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,761,401 - 34,784,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,764,004 - 34,784,788 (-)EnsemblGRCm39 Ensembl
GRCm381834,628,348 - 34,651,749 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,630,951 - 34,651,735 (-)EnsemblGRCm38mm10GRCm38
MGSCv371834,791,337 - 34,811,390 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,756,484 - 34,776,537 (-)NCBIMGSCv36mm8
Celera1835,084,102 - 35,104,048 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.69NCBI
Cdc23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,194,689 - 2,221,928 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,194,937 - 2,221,928 (+)NCBIChiLan1.0ChiLan1.0
CDC23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan15131,601,006 - 131,626,537 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,566,022 - 133,591,528 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,699,421 - 139,724,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,699,421 - 139,724,991 (-)Ensemblpanpan1.1panPan2
CDC23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,834,752 - 25,851,588 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,834,737 - 25,852,341 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,604,036 - 24,621,384 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,690,570 - 26,707,955 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,690,528 - 26,754,264 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,397,685 - 25,415,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,220,260 - 25,237,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,884,733 - 25,902,096 (-)NCBIUU_Cfam_GSD_1.0
Cdc23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,218,487 - 154,239,702 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,370,358 - 7,393,049 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,371,818 - 7,392,999 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,211,331 - 140,230,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,211,334 - 140,245,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,910,200 - 145,944,299 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,858,185 - 40,892,409 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2340,855,362 - 40,892,385 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603436,999,197 - 37,031,803 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474331,012,720 - 31,036,762 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474331,012,262 - 31,036,639 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdc23
64 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:120
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000037888
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat

Markers in Region
D18Rat130  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,242,920 - 26,243,137 (+)MAPPERmRatBN7.2
Rnor_6.01827,436,955 - 27,437,171NCBIRnor6.0
Rnor_5.01827,150,312 - 27,150,528UniSTSRnor5.0
RGSC_v3.41827,112,670 - 27,112,885RGDRGSC3.4
RGSC_v3.41827,112,671 - 27,112,887UniSTSRGSC3.4
RGSC_v3.11827,139,316 - 27,139,531RGD
Celera1825,980,563 - 25,980,779UniSTS
SHRSP x BN Map1811.4999RGD
SHRSP x BN Map1811.4999UniSTS
Cytogenetic Map18p12UniSTS
RH127370  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,238,464 - 26,238,673 (+)MAPPERmRatBN7.2
Rnor_6.01827,432,499 - 27,432,707NCBIRnor6.0
Rnor_5.01827,145,856 - 27,146,064UniSTSRnor5.0
RGSC_v3.41827,108,215 - 27,108,423UniSTSRGSC3.4
Celera1825,976,107 - 25,976,315UniSTS
RH 3.4 Map18367.8UniSTS
Cytogenetic Map18p12UniSTS
RH132745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,238,924 - 26,239,137 (+)MAPPERmRatBN7.2
Rnor_6.01827,432,959 - 27,433,171NCBIRnor6.0
Rnor_5.01827,146,316 - 27,146,528UniSTSRnor5.0
RGSC_v3.41827,108,675 - 27,108,887UniSTSRGSC3.4
Celera1825,976,567 - 25,976,779UniSTS
RH 3.4 Map18368.5UniSTS
Cytogenetic Map18p12UniSTS
AA859935  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,240,018 - 26,240,458 (+)MAPPERmRatBN7.2
Rnor_6.01827,434,053 - 27,434,492NCBIRnor6.0
Rnor_5.01827,147,410 - 27,147,849UniSTSRnor5.0
RGSC_v3.41827,109,769 - 27,110,208UniSTSRGSC3.4
Celera1825,977,661 - 25,978,100UniSTS
RH 3.4 Map18370.3UniSTS
Cytogenetic Map18p12UniSTS
RH136974  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,239,313 - 26,239,495 (+)MAPPERmRatBN7.2
Rnor_6.01827,433,348 - 27,433,529NCBIRnor6.0
Rnor_5.01827,146,705 - 27,146,886UniSTSRnor5.0
RGSC_v3.41827,109,064 - 27,109,245UniSTSRGSC3.4
Celera1825,976,956 - 25,977,137UniSTS
RH 3.4 Map18369.1UniSTS
Cytogenetic Map18p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 44 28 19 28 2 2 74 35 41 11 2
Low 8 13 13 13 6 9 6
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000037888   ⟹   ENSRNOP00000035675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,236,890 - 26,258,316 (-)Ensembl
Rnor_6.0 Ensembl1827,430,905 - 27,452,420 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101231   ⟹   ENSRNOP00000089789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,238,755 - 26,291,163 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110937   ⟹   ENSRNOP00000082129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,236,944 - 26,258,292 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114348   ⟹   ENSRNOP00000094723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1826,239,409 - 26,291,163 (-)Ensembl
RefSeq Acc Id: NM_001100659   ⟹   NP_001094129
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21826,238,766 - 26,258,535 (-)NCBI
Rnor_6.01827,432,800 - 27,452,569 (-)NCBI
Rnor_5.01827,144,282 - 27,168,142 (-)NCBI
RGSC_v3.41827,108,516 - 27,128,285 (-)RGD
Celera1825,976,408 - 25,996,159 (-)RGD
Sequence:
RefSeq Acc Id: XM_008772028   ⟹   XP_008770250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21826,236,891 - 26,260,611 (-)NCBI
Rnor_6.01827,430,924 - 27,452,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600907   ⟹   XP_017456396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21826,236,891 - 26,260,608 (-)NCBI
Rnor_6.01827,430,925 - 27,452,417 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096724   ⟹   XP_038952652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21826,240,496 - 26,260,611 (-)NCBI
RefSeq Acc Id: NP_001094129   ⟸   NM_001100659
- UniProtKB: F1LRQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770250   ⟸   XM_008772028
- Peptide Label: isoform X2
- UniProtKB: F1LRQ6 (UniProtKB/TrEMBL),   A0A8I5ZTG0 (UniProtKB/TrEMBL),   A6J2V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456396   ⟸   XM_017600907
- Peptide Label: isoform X1
- UniProtKB: F1LRQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000035675   ⟸   ENSRNOT00000037888
RefSeq Acc Id: XP_038952652   ⟸   XM_039096724
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000082129   ⟸   ENSRNOT00000110937
RefSeq Acc Id: ENSRNOP00000089789   ⟸   ENSRNOT00000101231
RefSeq Acc Id: ENSRNOP00000094723   ⟸   ENSRNOT00000114348
Protein Domains
Cdc23

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LRQ6-F1-model_v2 AlphaFold F1LRQ6 1-571 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700698
Promoter ID:EPDNEW_R11221
Type:multiple initiation site
Name:Cdc23_1
Description:cell division cycle 23
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01827,452,339 - 27,452,399EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304819 AgrOrtholog
BioCyc Gene G2FUF-7951 BioCyc
Ensembl Genes ENSRNOG00000024241 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037888.5 UniProtKB/TrEMBL
  ENSRNOT00000101231 ENTREZGENE
  ENSRNOT00000101231.1 UniProtKB/TrEMBL
  ENSRNOT00000110937 ENTREZGENE
  ENSRNOT00000110937.1 UniProtKB/TrEMBL
  ENSRNOT00000114348.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7374967 IMAGE-MGC_LOAD
InterPro APC8 UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
MGC_CLONE MGC:112820 IMAGE-MGC_LOAD
NCBI Gene 291689 ENTREZGENE
PANTHER CELL DIVISION CYCLE 16,23,27 UniProtKB/TrEMBL
  CELL DIVISION CYCLE PROTEIN 23 HOMOLOG UniProtKB/TrEMBL
Pfam APC8 UniProtKB/TrEMBL
  TPR_11 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PhenoGen Cdc23 PhenoGen
PROSITE TPR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000024241 RatGTEx
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8I5ZTG0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB31_RAT UniProtKB/TrEMBL
  A0A8I6ANL9_RAT UniProtKB/TrEMBL
  A6J2V4_RAT UniProtKB/TrEMBL
  A6J2V5 ENTREZGENE, UniProtKB/TrEMBL
  A6J2V6_RAT UniProtKB/TrEMBL
  F1LRQ6 ENTREZGENE, UniProtKB/TrEMBL
  Q4G037_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-16 Cdc23  cell division cycle 23  Cdc23  CDC23 (cell division cycle 23, yeast, homolog)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Cdc23  CDC23 (cell division cycle 23, yeast, homolog)  Cdc23_predicted  CDC23 (cell division cycle 23, yeast, homolog) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Cdc23_predicted  CDC23 (cell division cycle 23, yeast, homolog) (predicted)      Symbol and Name status set to approved 70820 APPROVED