Cdc23 (cell division cycle 23) - Rat Genome Database

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Gene: Cdc23 (cell division cycle 23) Heterocephalus glaber
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Symbol: Cdc23
Name: cell division cycle 23
RGD ID: 18901448
Description: INVOLVED IN anaphase-promoting complex-dependent catabolic process (inferred); cell division (inferred); mitotic cell cycle (inferred); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN anaphase-promoting complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cell division cycle protein 23 homolog; Cell division cycle protein 23-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474331,012,720 - 31,036,762 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474331,012,262 - 31,036,639 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdc23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474331,012,720 - 31,036,762 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474331,012,262 - 31,036,639 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CDC23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,187,650 - 138,213,323 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,187,650 - 138,213,343 (-)EnsemblGRCh38hg38GRCh38
GRCh375137,523,339 - 137,549,012 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,551,236 - 137,576,931 (-)NCBINCBI36Build 36hg18NCBI36
Build 345137,551,235 - 137,576,918NCBI
Celera5133,644,626 - 133,670,286 (-)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,714,335 - 132,740,003 (-)NCBIHuRef
CHM1_15136,955,960 - 136,981,642 (-)NCBICHM1_1
T2T-CHM13v2.05138,713,942 - 138,739,579 (-)NCBIT2T-CHM13v2.0
Cdc23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,761,401 - 34,784,802 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,764,004 - 34,784,788 (-)EnsemblGRCm39 Ensembl
GRCm381834,628,348 - 34,651,749 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,630,951 - 34,651,735 (-)EnsemblGRCm38mm10GRCm38
MGSCv371834,791,337 - 34,811,390 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,756,484 - 34,776,537 (-)NCBIMGSCv36mm8
Celera1835,084,102 - 35,104,048 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.69NCBI
Cdc23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,511,019 - 26,534,872 (-)NCBIGRCr8
mRatBN7.21826,236,891 - 26,260,611 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,236,890 - 26,291,163 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,366,147 - 26,385,916 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,129,965 - 27,149,771 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,464,872 - 26,484,678 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,430,924 - 27,452,569 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,430,905 - 27,452,420 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,144,282 - 27,168,142 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,108,516 - 27,128,285 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11827,138,237 - 27,154,701 (-)NCBI
Celera1825,976,408 - 25,996,159 (-)NCBICelera
Cytogenetic Map18p12NCBI
Cdc23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,194,689 - 2,221,928 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,194,937 - 2,221,928 (+)NCBIChiLan1.0ChiLan1.0
CDC23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24133,461,455 - 133,486,984 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15131,601,006 - 131,626,537 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,566,022 - 133,591,528 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,699,421 - 139,724,991 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,699,421 - 139,724,991 (-)Ensemblpanpan1.1panPan2
CDC23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,834,752 - 25,851,588 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,834,737 - 25,852,341 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,604,036 - 24,621,384 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,690,570 - 26,707,955 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,690,528 - 26,754,264 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,397,685 - 25,415,041 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,220,260 - 25,237,578 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,884,733 - 25,902,096 (-)NCBIUU_Cfam_GSD_1.0
Cdc23
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,218,487 - 154,239,702 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,370,358 - 7,393,049 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,371,818 - 7,392,999 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,211,331 - 140,230,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,211,334 - 140,245,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,910,200 - 145,944,299 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,858,185 - 40,892,409 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2340,855,362 - 40,892,385 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603436,999,197 - 37,031,803 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000022437   ⟹   ENSHGLP00000022226
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474331,012,720 - 31,036,762 (-)Ensembl
RefSeq Acc Id: XM_004841807   ⟹   XP_004841864
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474331,012,262 - 31,036,639 (-)NCBI
RefSeq Acc Id: XM_013071133   ⟹   XP_012926587
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474331,012,262 - 31,036,638 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004841864 (Get FASTA)   NCBI Sequence Viewer  
  XP_012926587 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06151 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022226
  ENSHGLP00100015129
GenBank Protein JAN97410 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004841864   ⟸   XM_004841807
- Peptide Label: isoform X1
- UniProtKB: G5BA40 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926587   ⟸   XM_013071133
- Peptide Label: isoform X2
Ensembl Acc Id: ENSHGLP00000022226   ⟸   ENSHGLT00000022437


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015847 Ensembl, ENTREZGENE
  ENSHGLG00100011193 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022437 ENTREZGENE
  ENSHGLT00100015296 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro APC8 UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report hgl:101711746 UniProtKB/TrEMBL
NCBI Gene Cdc23 ENTREZGENE
PANTHER CELL DIVISION CYCLE 16,23,27 UniProtKB/TrEMBL
  CELL DIVISION CYCLE PROTEIN 23 HOMOLOG UniProtKB/TrEMBL
Pfam ANAPC8 UniProtKB/TrEMBL
  TPR_11 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0AAX6QUX6_HETGA UniProtKB/TrEMBL
  G5BA40 ENTREZGENE, UniProtKB/TrEMBL