Yipf5 (Yip1 domain family, member 5) - Rat Genome Database

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Gene: Yipf5 (Yip1 domain family, member 5) Rattus norvegicus
Analyze
Symbol: Yipf5
Name: Yip1 domain family, member 5
RGD ID: 1359165
Description: Predicted to be involved in Golgi vesicle transport; insulin processing; and regulation of ER to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi organization. Predicted to be located in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum exit site. Predicted to be active in trans-Golgi network. Orthologous to human YIPF5 (Yip1 domain family member 5); INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ac2-256; LOC361315; similar to Ac2-256; YIP1 family member 5; YPT-interacting protein 1 A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81832,374,913 - 32,388,046 (-)NCBIGRCr8
mRatBN7.21832,123,814 - 32,136,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1832,123,842 - 32,157,642 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1832,227,984 - 32,241,117 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01832,971,005 - 32,984,151 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01832,323,247 - 32,336,380 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01833,401,103 - 33,436,885 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1833,401,106 - 33,434,775 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01833,075,375 - 33,111,270 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41833,249,184 - 33,262,317 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11833,285,709 - 33,320,338 (-)NCBI
Celera1831,744,527 - 31,757,660 (-)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11489904   PMID:15254263   PMID:15489334  


Genomics

Comparative Map Data
Yipf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81832,374,913 - 32,388,046 (-)NCBIGRCr8
mRatBN7.21832,123,814 - 32,136,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1832,123,842 - 32,157,642 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1832,227,984 - 32,241,117 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01832,971,005 - 32,984,151 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01832,323,247 - 32,336,380 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01833,401,103 - 33,436,885 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1833,401,106 - 33,434,775 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01833,075,375 - 33,111,270 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41833,249,184 - 33,262,317 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11833,285,709 - 33,320,338 (-)NCBI
Celera1831,744,527 - 31,757,660 (-)NCBICelera
Cytogenetic Map18p11NCBI
YIPF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385144,158,162 - 144,170,659 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5144,158,162 - 144,170,714 (-)EnsemblGRCh38hg38GRCh38
GRCh375143,537,726 - 143,550,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365143,517,919 - 143,530,387 (-)NCBINCBI36Build 36hg18NCBI36
Celera5139,619,111 - 139,631,663 (-)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5138,685,376 - 138,697,926 (-)NCBIHuRef
CHM1_15142,972,246 - 142,984,802 (-)NCBICHM1_1
T2T-CHM13v2.05144,690,356 - 144,702,848 (-)NCBIT2T-CHM13v2.0
Yipf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391840,337,918 - 40,352,452 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1840,336,949 - 40,352,482 (-)EnsemblGRCm39 Ensembl
GRCm381840,204,865 - 40,219,399 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1840,203,896 - 40,219,429 (-)EnsemblGRCm38mm10GRCm38
MGSCv371840,364,519 - 40,379,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361840,330,839 - 40,345,373 (-)NCBIMGSCv36mm8
Celera1841,557,547 - 41,572,081 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1821.28NCBI
Yipf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554159,795,214 - 9,812,405 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554159,795,214 - 9,809,871 (+)NCBIChiLan1.0ChiLan1.0
YIPF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24139,395,360 - 139,406,693 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15137,528,762 - 137,546,258 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05139,557,911 - 139,570,364 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15145,612,807 - 145,625,280 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5145,612,807 - 145,625,280 (-)Ensemblpanpan1.1panPan2
YIPF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1238,894,687 - 38,907,487 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl238,895,995 - 38,907,422 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha235,940,091 - 35,952,894 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0239,347,925 - 39,360,732 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl239,343,164 - 39,360,711 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1236,420,546 - 36,433,335 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0237,233,996 - 37,246,789 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0238,036,907 - 38,049,724 (-)NCBIUU_Cfam_GSD_1.0
Yipf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213148,691,533 - 148,707,183 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650410,265,477 - 10,282,108 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650410,265,506 - 10,278,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
YIPF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2145,651,989 - 145,668,557 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12145,655,005 - 145,668,632 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
YIPF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12346,765,326 - 46,777,245 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2346,766,484 - 46,777,244 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603431,059,302 - 31,072,166 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Yipf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247743,399,250 - 3,414,740 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247743,398,368 - 3,414,926 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Yipf5
30 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:305
Count of miRNA genes:206
Interacting mature miRNAs:233
Transcripts:ENSRNOT00000020385, ENSRNOT00000040877
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat

Markers in Region
BE111849  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21832,124,125 - 32,124,215 (+)MAPPERmRatBN7.2
Rnor_6.01833,401,415 - 33,401,504NCBIRnor6.0
Rnor_5.01833,075,687 - 33,075,776UniSTSRnor5.0
RGSC_v3.41833,249,496 - 33,249,585UniSTSRGSC3.4
Celera1831,744,839 - 31,744,928UniSTS
RH 3.4 Map18450.5UniSTS
Cytogenetic Map18p11UniSTS
RH137277  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21832,137,656 - 32,137,855 (+)MAPPERmRatBN7.2
Rnor_6.01833,414,946 - 33,415,144NCBIRnor6.0
Rnor_5.01833,089,218 - 33,089,416UniSTSRnor5.0
RGSC_v3.41833,263,027 - 33,263,225UniSTSRGSC3.4
Celera1831,758,370 - 31,758,568UniSTS
Cytogenetic Map18p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 38 57 41 19 41 4 4 74 35 41 11 4
Low 5 4 7 4
Below cutoff

Sequence


Ensembl Acc Id: ENSRNOT00000020385   ⟹   ENSRNOP00000020385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1832,123,842 - 32,136,945 (-)Ensembl
Rnor_6.0 Ensembl1833,401,106 - 33,414,236 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000040877   ⟹   ENSRNOP00000041654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1832,125,074 - 32,157,642 (-)Ensembl
Rnor_6.0 Ensembl1833,402,363 - 33,434,775 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117916   ⟹   ENSRNOP00000082127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1832,125,074 - 32,157,642 (-)Ensembl
RefSeq Acc Id: NM_001014150   ⟹   NP_001014172
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81832,374,913 - 32,388,046 (-)NCBI
mRatBN7.21832,123,814 - 32,136,947 (-)NCBI
Rnor_6.01833,401,103 - 33,414,236 (-)NCBI
Rnor_5.01833,075,375 - 33,111,270 (-)NCBI
RGSC_v3.41833,249,184 - 33,262,317 (-)RGD
Celera1831,744,527 - 31,757,660 (-)RGD
Sequence:
RefSeq Acc Id: NP_001014172   ⟸   NM_001014150
- UniProtKB: Q5XID0 (UniProtKB/Swiss-Prot),   A6J3I2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020385   ⟸   ENSRNOT00000020385
Ensembl Acc Id: ENSRNOP00000041654   ⟸   ENSRNOT00000040877
Ensembl Acc Id: ENSRNOP00000082127   ⟸   ENSRNOT00000117916
Protein Domains
Yip1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XID0-F1-model_v2 AlphaFold Q5XID0 1-257 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700745
Promoter ID:EPDNEW_R11268
Type:multiple initiation site
Name:Yipf5_1
Description:Yip1 domain family, member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01833,414,256 - 33,414,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359165 AgrOrtholog
BioCyc Gene G2FUF-7737 BioCyc
Ensembl Genes ENSRNOG00000014564 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055018115 UniProtKB/Swiss-Prot
  ENSRNOG00060011293 UniProtKB/Swiss-Prot
  ENSRNOG00065018593 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000020385.6 UniProtKB/Swiss-Prot
  ENSRNOT00000040877.2 UniProtKB/TrEMBL
  ENSRNOT00000117916.1 UniProtKB/TrEMBL
  ENSRNOT00055030680 UniProtKB/Swiss-Prot
  ENSRNOT00060019094 UniProtKB/Swiss-Prot
  ENSRNOT00065031216 UniProtKB/Swiss-Prot
InterPro Yip1/4-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Yip1_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361315 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 361315 ENTREZGENE
PANTHER PROTEIN YIPF5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Yip1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Yipf5 PhenoGen
RatGTEx ENSRNOG00000014564 RatGTEx
  ENSRNOG00055018115 RatGTEx
  ENSRNOG00060011293 RatGTEx
  ENSRNOG00065018593 RatGTEx
UniProt A0A8I5ZUJ6_RAT UniProtKB/TrEMBL
  A6J3I2 ENTREZGENE, UniProtKB/TrEMBL
  A6J3I3_RAT UniProtKB/TrEMBL
  Q5XID0 ENTREZGENE
  Q7TPI8_RAT UniProtKB/TrEMBL
  YIPF5_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Yipf5  Yip1 domain family, member 5  LOC361315  similar to Ac2-256  Symbol and Name updated 1299863 APPROVED
2005-07-29 LOC361315  similar to Ac2-256      Symbol and Name status set to provisional 70820 PROVISIONAL