Rps14 (ribosomal protein S14) - Rat Genome Database

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Gene: Rps14 (ribosomal protein S14) Rattus norvegicus
Analyze
Symbol: Rps14
Name: ribosomal protein S14
RGD ID: 62025
Description: A structural constituent of ribosome. Involved in ribosomal small subunit assembly. Part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in chromosome 5q deletion syndrome. Orthologous to human RPS14 (ribosomal protein S14); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S14
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Rps14-ps7  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21854,227,854 - 54,232,638 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,227,854 - 54,233,166 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01856,042,532 - 56,047,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,044,369 - 56,047,316 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,276,797 - 55,281,581 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,727,647 - 56,732,431 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11856,799,878 - 56,804,663 (+)NCBI
Celera1852,382,571 - 52,387,355 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
caffeine  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
ethanol  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
methidathion  (ISO)
miconazole  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nimesulide  (EXP)
nitric oxide  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
PhIP  (EXP)
pirinixic acid  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
stigmasterol  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
tolcapone  (EXP)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Sequence of a cDNA encoding mouse ribosomal protein S14. Lee M, etal., Biosci Biotechnol Biochem 1998 Mar;62(3):573-4.
5. Ribosomal proteins S2, S6, S10, S14, S15 and S25 are localized on the surface of mammalian 40 S subunits and stabilize their conformation. A study with immobilized trypsin. Marion MJ and Marion C, FEBS Lett. 1988 May 23;232(2):281-5.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. The primary structure of rat ribosomal protein S14. Paz V, etal., Nucleic Acids Res 1989 Nov 25;17(22):9484.
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:3683397   PMID:7867928   PMID:8706699   PMID:9152021   PMID:15883184   PMID:16854843   PMID:18202658   PMID:18614015   PMID:19946888   PMID:20458337   PMID:21170055   PMID:21423176  
PMID:22082260   PMID:22681889   PMID:23376485   PMID:23979707   PMID:24625528  


Genomics

Comparative Map Data
Rps14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21854,227,854 - 54,232,638 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,227,854 - 54,233,166 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01856,042,532 - 56,047,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,044,369 - 56,047,316 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,276,797 - 55,281,581 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,727,647 - 56,732,431 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11856,799,878 - 56,804,663 (+)NCBI
Celera1852,382,571 - 52,387,355 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
RPS14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,442,635 - 150,449,739 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl5150,442,635 - 150,449,739 (-)EnsemblGRCh38hg38GRCh38
GRCh375149,822,198 - 149,829,302 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,803,985 - 149,809,512 (-)NCBINCBI36Build 36hg18NCBI36
Build 345149,803,996 - 149,809,512NCBI
Celera5145,904,832 - 145,910,362 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5144,971,240 - 144,976,773 (-)NCBIHuRef
CHM1_15149,256,215 - 149,261,742 (-)NCBICHM1_1
T2T-CHM13v2.05150,979,169 - 150,986,273 (-)NCBIT2T-CHM13v2.0
Rps14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,907,668 - 60,911,618 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1860,880,170 - 60,911,618 (+)EnsemblGRCm39 Ensembl
GRCm381860,774,596 - 60,778,546 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,747,098 - 60,778,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv371860,934,250 - 60,938,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361860,900,018 - 60,903,913 (+)NCBIMGSCv36mm8
Celera1862,058,375 - 62,062,327 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.4NCBI
Rps14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,102,511 - 4,108,633 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,103,223 - 4,108,633 (+)NCBIChiLan1.0ChiLan1.0
RPS14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15151,873,605 - 151,879,170 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,873,605 - 151,879,128 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05145,869,410 - 145,875,038 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RPS14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,661,335 - 58,667,968 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,661,152 - 58,667,964 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,427,115 - 58,433,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,141,543 - 59,148,150 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,141,360 - 59,148,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,930,097 - 58,936,709 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,044,779 - 59,051,392 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,575,541 - 59,582,143 (+)NCBIUU_Cfam_GSD_1.0
Rps14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,921,901 - 142,926,873 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365044,495,930 - 4,500,843 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,430,049 - 151,433,856 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,430,047 - 151,433,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPS14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,046,670 - 53,052,082 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,044,994 - 53,050,194 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603424,660,634 - 24,666,103 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247749,726,434 - 9,733,410 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247749,727,216 - 9,733,114 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
MARC_9759-9760:996688576:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21754,904,138 - 54,904,449 (+)MAPPERmRatBN7.2
mRatBN7.25138,350,339 - 138,350,648 (+)MAPPERmRatBN7.2
Rnor_6.05144,083,176 - 144,083,484NCBIRnor6.0
Rnor_6.01759,804,014 - 59,804,324NCBIRnor6.0
Rnor_5.01761,593,283 - 61,593,593UniSTSRnor5.0
Rnor_5.05147,852,636 - 147,852,944UniSTSRnor5.0
RGSC_v3.45145,426,545 - 145,426,853UniSTSRGSC3.4
RGSC_v3.41763,457,903 - 63,458,213UniSTSRGSC3.4
Celera1756,244,169 - 56,244,479UniSTS
Celera5136,860,756 - 136,861,064UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map17q12.1UniSTS
Cytogenetic Map18q12.1UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
1600375Mcs22Mammary carcinoma susceptibility QTL 223.3mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)185253976363933058Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)185253976369140759Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:13
Count of miRNA genes:11
Interacting mature miRNAs:13
Transcripts:ENSRNOT00000059501
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 3 27 26 20 17 20 1 1 39 18 36 7 1
Medium 16 31 21 2 21 7 10 35 17 5 4 7
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC095289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059501   ⟹   ENSRNOP00000056260
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,227,854 - 54,233,166 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095750   ⟹   ENSRNOP00000092827
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,228,391 - 54,232,541 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109750   ⟹   ENSRNOP00000086532
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,228,391 - 54,232,541 (+)Ensembl
RefSeq Acc Id: NM_022672   ⟹   NP_073163
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21854,227,854 - 54,232,638 (+)NCBI
Rnor_6.01856,042,532 - 56,047,316 (+)NCBI
Rnor_5.01855,276,797 - 55,281,581 (+)NCBI
RGSC_v3.41856,727,647 - 56,732,431 (+)RGD
Celera1852,382,571 - 52,387,355 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_073163 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH58472 (Get FASTA)   NCBI Sequence Viewer  
  CAA33143 (Get FASTA)   NCBI Sequence Viewer  
  P13471 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_073163   ⟸   NM_022672
- UniProtKB: P13471 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000086532   ⟸   ENSRNOT00000109750
RefSeq Acc Id: ENSRNOP00000056260   ⟸   ENSRNOT00000059501
RefSeq Acc Id: ENSRNOP00000092827   ⟸   ENSRNOT00000095750

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P13471-F1-model_v2 AlphaFold P13471 1-151 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62025 AgrOrtholog
BioCyc Gene G2FUF-7357 BioCyc
Ensembl Genes ENSRNOG00000018774 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000056260 ENTREZGENE
  ENSRNOP00000086532.1 UniProtKB/TrEMBL
  ENSRNOP00000092827.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059501 ENTREZGENE
  ENSRNOT00000095750.1 UniProtKB/TrEMBL
  ENSRNOT00000109750.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.420.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6918325 IMAGE-MGC_LOAD
InterPro Ribosomal_S11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S11_CS UniProtKB/Swiss-Prot
  Ribosomal_S11_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29284 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72815 IMAGE-MGC_LOAD
NCBI Gene 29284 ENTREZGENE
PANTHER PTHR11759 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribosomal_S11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rps14 PhenoGen
PIRSF Ribosomal_S11 UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_S11 UniProtKB/Swiss-Prot
TIGR TC228585
UniProt A0A8I6A3Z2_RAT UniProtKB/TrEMBL
  A0A8I6AW59_RAT UniProtKB/TrEMBL
  P13471 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps14  ribosomal protein S14      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference