Atp9b (ATPase phospholipid transporting 9B (putative)) - Rat Genome Database

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Gene: Atp9b (ATPase phospholipid transporting 9B (putative)) Rattus norvegicus
Analyze
Symbol: Atp9b
Name: ATPase phospholipid transporting 9B (putative)
RGD ID: 1563006
Description: Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in endocytosis; phospholipid translocation; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Orthologous to human ATP9B (ATPase phospholipid transporting 9B (putative)); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ATPase class II type 9B; ATPase, class II, type 9B; LOC291411; probable phospholipid-transporting ATPase IIB; similar to Potential phospholipid-transporting ATPase IIB
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81876,451,821 - 76,643,931 (-)NCBIGRCr8
mRatBN7.21874,176,863 - 74,368,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1874,176,863 - 74,368,953 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1876,279,460 - 76,472,822 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01876,948,775 - 77,142,136 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01874,794,253 - 74,986,321 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01877,343,551 - 77,535,608 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1877,343,551 - 77,535,593 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01876,446,514 - 76,638,363 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,616,788 - 77,812,509 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1872,834,005 - 73,025,522 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:21914794  


Genomics

Comparative Map Data
Atp9b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81876,451,821 - 76,643,931 (-)NCBIGRCr8
mRatBN7.21874,176,863 - 74,368,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1874,176,863 - 74,368,953 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1876,279,460 - 76,472,822 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01876,948,775 - 77,142,136 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01874,794,253 - 74,986,321 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01877,343,551 - 77,535,608 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1877,343,551 - 77,535,593 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01876,446,514 - 76,638,363 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41877,616,788 - 77,812,509 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1872,834,005 - 73,025,522 (-)NCBICelera
Cytogenetic Map18q12.3NCBI
ATP9B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381879,069,394 - 79,378,283 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1879,069,285 - 79,378,287 (+)EnsemblGRCh38hg38GRCh38
GRCh371876,829,394 - 77,138,283 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361874,930,385 - 75,239,271 (+)NCBINCBI36Build 36hg18NCBI36
Build 341874,930,384 - 75,239,268NCBI
Celera1873,601,459 - 73,911,517 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1873,459,392 - 73,766,418 (+)NCBIHuRef
CHM1_11876,824,632 - 77,132,024 (+)NCBICHM1_1
T2T-CHM13v2.01879,318,534 - 79,632,317 (+)NCBIT2T-CHM13v2.0
Atp9b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391880,777,356 - 80,977,291 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1880,777,356 - 80,977,275 (-)EnsemblGRCm39 Ensembl
GRCm381880,734,141 - 80,934,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,734,141 - 80,934,060 (-)EnsemblGRCm38mm10GRCm38
MGSCv371880,931,816 - 81,130,797 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361880,897,136 - 81,096,117 (-)NCBIMGSCv36mm8
Celera1881,844,355 - 82,040,064 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1853.9NCBI
Atp9b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540262,231,875 - 62,537,311 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540262,231,875 - 62,537,311 (+)NCBIChiLan1.0ChiLan1.0
ATP9B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21796,626,590 - 96,948,922 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11882,319,214 - 82,641,401 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01872,468,421 - 72,847,314 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11875,686,430 - 75,988,106 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1875,686,430 - 75,988,106 (+)Ensemblpanpan1.1panPan2
ATP9B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111,136,862 - 1,374,102 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11,136,865 - 1,374,514 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha12,142,586 - 2,379,869 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01938,790 - 1,175,972 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1938,796 - 1,175,952 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11991,286 - 1,228,528 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01937,760 - 1,174,816 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011,108,278 - 1,345,797 (-)NCBIUU_Cfam_GSD_1.0
Atp9b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494415,283,002 - 15,525,515 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936616603,588 - 846,640 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936616604,132 - 846,645 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1146,022,978 - 146,221,769 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11146,022,975 - 146,228,847 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21161,556,822 - 161,793,021 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP9B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.118832,908 - 1,115,758 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl18830,771 - 1,115,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606024,933,002 - 25,248,168 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp9b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248061,037,622 - 1,345,721 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248061,038,093 - 1,346,070 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp9b
816 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:158
Interacting mature miRNAs:189
Transcripts:ENSRNOT00000041380
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
1298072Cia26Collagen induced arthritis QTL 263.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)185470976983828827Rat
724542Kidm2Kidney mass QTL 22.6kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)185917211583828827Rat
2301969Bp324Blood pressure QTL 3244.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)185971241776477814Rat
70185BpQTLcluster15Blood pressure QTL cluster 154.61arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)185971241776477814Rat
6903353Bp353Blood pressure QTL 3532.8arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)185979647883828827Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185979647883828827Rat
61384Bp48Blood pressure QTL 4819.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)186062231177209844Rat
631675Iddm15Insulin dependent diabetes mellitus QTL 15urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)186062231177209844Rat
634333Pia19Pristane induced arthritis QTL 193.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)187399714079532029Rat

Markers in Region
RH128330  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21874,177,530 - 74,177,731 (+)MAPPERmRatBN7.2
Rnor_6.01877,344,219 - 77,344,419NCBIRnor6.0
Rnor_5.01876,447,182 - 76,447,382UniSTSRnor5.0
RGSC_v3.41877,617,456 - 77,617,656UniSTSRGSC3.4
Celera1872,834,673 - 72,834,873UniSTS
RH 3.4 Map18794.8UniSTS
Cytogenetic Map18q12.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 37 21 19 21 8 11 74 35 41 11 8
Low 15 20 20 20
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000041380   ⟹   ENSRNOP00000040756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1874,176,863 - 74,368,953 (-)Ensembl
Rnor_6.0 Ensembl1877,343,551 - 77,535,564 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090265   ⟹   ENSRNOP00000072701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1874,177,532 - 74,368,953 (-)Ensembl
Rnor_6.0 Ensembl1877,344,197 - 77,535,593 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097484   ⟹   ENSRNOP00000076362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1874,176,863 - 74,354,634 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119395   ⟹   ENSRNOP00000094514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1874,176,863 - 74,368,953 (-)Ensembl
RefSeq Acc Id: NM_001106130   ⟹   NP_001099600
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,451,821 - 76,643,893 (-)NCBI
mRatBN7.21874,176,863 - 74,368,953 (-)NCBI
Rnor_6.01877,343,551 - 77,535,564 (-)NCBI
Rnor_5.01876,446,514 - 76,638,363 (-)NCBI
RGSC_v3.41877,616,788 - 77,812,509 (-)RGD
Celera1872,834,005 - 73,025,522 (-)RGD
Sequence:
RefSeq Acc Id: XM_006254983   ⟹   XP_006255045
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,452,486 - 76,643,931 (-)NCBI
mRatBN7.21874,177,525 - 74,368,991 (-)NCBI
Rnor_6.01877,344,213 - 77,535,607 (-)NCBI
Rnor_5.01876,446,514 - 76,638,363 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600874   ⟹   XP_017456363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,452,486 - 76,643,931 (-)NCBI
mRatBN7.21874,177,525 - 74,368,993 (-)NCBI
Rnor_6.01877,344,213 - 77,535,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600875   ⟹   XP_017456364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,452,486 - 76,643,931 (-)NCBI
mRatBN7.21874,177,525 - 74,368,992 (-)NCBI
Rnor_6.01877,344,213 - 77,535,608 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039096629   ⟹   XP_038952557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,454,282 - 76,643,931 (-)NCBI
mRatBN7.21874,178,466 - 74,368,993 (-)NCBI
RefSeq Acc Id: XM_039096630   ⟹   XP_038952558
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,452,486 - 76,597,796 (-)NCBI
mRatBN7.21874,177,525 - 74,322,852 (-)NCBI
RefSeq Acc Id: XM_039096632   ⟹   XP_038952560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,452,486 - 76,555,922 (-)NCBI
mRatBN7.21874,177,525 - 74,280,964 (-)NCBI
RefSeq Acc Id: XM_063277158   ⟹   XP_063133228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,452,486 - 76,643,931 (-)NCBI
RefSeq Acc Id: XM_063277159   ⟹   XP_063133229
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81876,452,486 - 76,549,108 (-)NCBI
RefSeq Acc Id: NP_001099600   ⟸   NM_001106130
- UniProtKB: D4ABB8 (UniProtKB/Swiss-Prot),   A6K5I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255045   ⟸   XM_006254983
- Peptide Label: isoform X4
- UniProtKB: A0A0G2K3M6 (UniProtKB/TrEMBL),   A6K5I4 (UniProtKB/TrEMBL),   A6K5I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456364   ⟸   XM_017600875
- Peptide Label: isoform X2
- UniProtKB: A6K5I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456363   ⟸   XM_017600874
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GL76 (UniProtKB/TrEMBL),   A6K5I3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000040756   ⟸   ENSRNOT00000041380
RefSeq Acc Id: ENSRNOP00000072701   ⟸   ENSRNOT00000090265
RefSeq Acc Id: XP_038952558   ⟸   XM_039096630
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZJ47 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952560   ⟸   XM_039096632
- Peptide Label: isoform X6
- UniProtKB: A6K5I2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952557   ⟸   XM_039096629
- Peptide Label: isoform X3
- UniProtKB: A6K5I3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076362   ⟸   ENSRNOT00000097484
RefSeq Acc Id: ENSRNOP00000094514   ⟸   ENSRNOT00000119395
RefSeq Acc Id: XP_063133228   ⟸   XM_063277158
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063133229   ⟸   XM_063277159
- Peptide Label: isoform X7
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABB8-F1-model_v2 AlphaFold D4ABB8 1-1147 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700891
Promoter ID:EPDNEW_R11415
Type:multiple initiation site
Name:Atp9b_1
Description:ATPase phospholipid transporting 9B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01877,535,566 - 77,535,626EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563006 AgrOrtholog
BioCyc Gene G2FUF-6850 BioCyc
Ensembl Genes ENSRNOG00000032039 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00065002852 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000041380 ENTREZGENE
  ENSRNOT00000041380.5 UniProtKB/Swiss-Prot
  ENSRNOT00000090265.2 UniProtKB/TrEMBL
  ENSRNOT00000097484.1 UniProtKB/TrEMBL
  ENSRNOT00000119395.1 UniProtKB/TrEMBL
  ENSRNOT00065004002 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.1110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7122922 IMAGE-MGC_LOAD
InterPro ATPase_P-typ_cyto_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HAD_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_ATPase_IV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:291411 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105863 IMAGE-MGC_LOAD
NCBI Gene 291411 ENTREZGENE
PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR24092:SF49 UniProtKB/TrEMBL
  PTHR24092:SF50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atp9b PhenoGen
PRINTS CATATPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032039 RatGTEx
  ENSRNOG00065002852 RatGTEx
Superfamily-SCOP SSF56784 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81653 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81665 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K3M6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZJ47 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GL76 ENTREZGENE, UniProtKB/TrEMBL
  A6K5I2 ENTREZGENE, UniProtKB/TrEMBL
  A6K5I3 ENTREZGENE, UniProtKB/TrEMBL
  A6K5I4 ENTREZGENE, UniProtKB/TrEMBL
  ATP9B_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q5XFX3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp9b  ATPase phospholipid transporting 9B (putative)  Atp9b  ATPase, class II, type 9B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-04 Atp9b  ATPase, class II, type 9B  LOC291411  similar to Potential phospholipid-transporting ATPase IIB  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC291411  similar to Potential phospholipid-transporting ATPase IIB      Symbol and Name status set to provisional 70820 PROVISIONAL