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Gene: Pde6a (phosphodiesterase 6A) Rattus norvegicus
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Symbol: Pde6a
Name: phosphodiesterase 6A
RGD ID: 1306835
Description: Predicted to have 3',5'-cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in photoreceptor cell maintenance; retina development in camera-type eye; and signal transduction. Predicted to localize to photoreceptor outer segment membrane. Human ortholog(s) of this gene implicated in retinitis pigmentosa 43. Orthologous to human PDE6A (phosphodiesterase 6A); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC307401; phosphodiesterase 6A, cGMP-specific, rod, alpha; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha
Orthologs:
Homo sapiens (human) : PDE6A (phosphodiesterase 6A)  HGNC  Alliance
Mus musculus (house mouse) : Pde6a (phosphodiesterase 6A, cGMP-specific, rod, alpha)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pde6a (phosphodiesterase 6A)
Pan paniscus (bonobo/pygmy chimpanzee) : PDE6A (phosphodiesterase 6A)
Canis lupus familiaris (dog) : PDE6A (phosphodiesterase 6A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pde6a (phosphodiesterase 6A)
Sus scrofa (pig) : PDE6A (phosphodiesterase 6A)
Chlorocebus sabaeus (African green monkey) : PDE6A (phosphodiesterase 6A)
Heterocephalus glaber (naked mole-rat) : Pde6a (phosphodiesterase 6A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01856,544,652 - 56,617,480 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,544,652 - 56,617,480 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,775,712 - 55,848,855 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41857,194,726 - 57,268,536 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11857,267,060 - 57,339,325 (+)NCBI
Celera1852,829,228 - 52,901,931 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pde6a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1306835
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.