Ppp2r2b (protein phosphatase 2, regulatory subunit B, beta)

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Gene: Ppp2r2b (protein phosphatase 2, regulatory subunit B, beta) Rattus norvegicus

Analyze

Symbol:

Ppp2r2b

Name:

protein phosphatase 2, regulatory subunit B, beta

RGD ID:

631441

Description:

Predicted to have protein phosphatase regulator activity. Involved in several processes, including mitochondrion organization; nervous system development; and positive regulation of neuron apoptotic process. Localizes to cytosol; mitochondrial outer membrane; and protein phosphatase type 2A complex. Colocalizes with cytoskeleton. Human ortholog(s) of this gene implicated in Alzheimer's disease; brain disease; breast cancer; and spinocerebellar ataxia type 12. Orthologous to human PPP2R2B (protein phosphatase 2 regulatory subunit Bbeta); PARTICIPATES IN platelet-derived growth factor signaling pathway; Chagas disease pathway; hepatitis C pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

BRbeta B-regulatory subunit of protein phosphatase 2A; PP2A subunit B isoform B55-beta; PP2A subunit B isoform beta; PP2A subunit B isoform BRB; PP2A subunit B isoform PR55-beta; PP2A subunit B isoform R2-beta; PP2A, subunit B, B-beta isoform; PP2A, subunit B, B55-beta isoform; PP2A, subunit B, BRB isoform; PP2A, subunit B, PR55-beta isoform; PP2A, subunit B, R2-beta isoform; Pppr2b2; protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform; protein phosphatase 2 (formerly 2A), regulatory subunit B, beta isoform; serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Allele / Splice:

Ppp2r2b^{Tn(sb-T2/Bart3)2.239Mcwi}

Genetic Models:

F344-Ppp2r2b^{Tn(sb-T2/Bart3)2.239Mcwi}

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	34,653,716 - 35,080,889 (-)	NCBI
Rnor_6.0 Ensembl	18	36,985,714 - 37,245,809 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	18	36,985,709 - 37,421,383 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	18	36,647,298 - 37,076,455 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	35,865,837 - 36,318,308 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	18	35,901,503 - 36,179,323 (-)	NCBI
Celera	18	34,248,471 - 34,670,726 (-)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

brain disease (ISO)

breast cancer (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

spinocerebellar ataxia type 12 (ISO)

Spinocerebellar Ataxias (ISO)

systemic lupus erythematosus (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (EXP,ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-nitrotoluene (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (EXP)

aconitine (EXP)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

alpha-hexachlorocyclohexane (EXP)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bleomycin A5 (ISO)

bromochloroacetic acid (EXP)

butanal (ISO)

Butylbenzyl phthalate (EXP)

caffeine (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

corticosterone (EXP)

DDT (EXP)

decabromodiphenyl ether (EXP)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diethylstilbestrol (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

disulfiram (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

gamma-hexachlorocyclohexane (EXP)

genistein (ISO)

GW 4064 (ISO)

Lasiocarpine (ISO)

lead(0) (ISO)

lead(2+) (ISO)

LY294002 (ISO)

melphalan (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (ISO)

nevirapine (EXP)

niclosamide (ISO)

Nor-9-carboxy-delta9-THC (ISO)

O-methyleugenol (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

PCB138 (ISO)

pentanal (ISO)

phenylmercury acetate (ISO)

pioglitazone (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

progesterone (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium fluoride (EXP,ISO)

staurosporine (EXP)

sulforaphane (ISO)

triadimefon (ISO)

trichostatin A (ISO)

triphenyl phosphate (EXP)

tunicamycin (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (IEP)

mitochondrial fission (IDA)

mitochondrial fragmentation involved in apoptotic process (IMP)

neuron differentiation (IEP)

peptidyl-serine dephosphorylation (IBA)

positive regulation of neuron apoptotic process (IDA)

protein targeting to mitochondrion (IMP)

regulation of phosphoprotein phosphatase activity (IDA,IEA)

spermatid development (IEP)

Cellular Component

cytoplasm (IDA)

cytoskeleton (IDA)

cytosol (IBA,IDA)

membrane (IDA)

mitochondrial outer membrane (IDA,IEA)

mitochondrion (IDA)

protein phosphatase type 2A complex (IBA,IDA,IEA)

Molecular Function

protein binding (IPI,ISO)

protein phosphatase regulator activity (IBA,IEA)

protein-containing complex binding (IDA)

Molecular Pathway Annotations Click to see Annotation Detail View

Chagas disease pathway (IEA)

hepatitis C pathway (IEA)

mRNA decay pathway (IEA)

platelet-derived growth factor signaling pathway (ISO)

References

References - curated


1.	Akiyama N, etal., Eur J Biochem 1995 Jun 1;230(2):766-72.
2.	Brussino A, etal., Mov Disord. 2010 Jul 15;25(9):1269-73.
3.	Crispin JC, etal., Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12443-8. Epub 2011 Jul 11.
4.	Dagda RK, etal., J Biol Chem. 2003 Jul 4;278(27):24976-85. Epub 2003 Apr 24.
5.	Dagda RK, etal., J Biol Chem. 2005 Jul 22;280(29):27375-82. Epub 2005 May 27.
6.	Dagda RK, etal., J Biol Chem. 2008 Dec 26;283(52):36241-8. Epub 2008 Oct 21.
7.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8.	GOA data from the GO Consortium
9.	Hatano Y, etal., FEBS Lett 1993 Jun 7;324(1):71-5.
10.	Kimura R, etal., Neurosci Lett. 2011 Jan 10;487(3):354-7. Epub 2010 Oct 26.
11.	OMIM Disease Annotation Pipeline
12.	Pipeline to import KEGG annotations from KEGG into RGD
13.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
14.	RGD automated data pipeline
15.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
16.	RGD automated import pipeline for gene-chemical interactions
17.	Strack S, etal., J Comp Neurol. 1998 Mar 23;392(4):515-27.
18.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
19.	Vazquez A, etal., Int J Cancer. 2011 May 15;128(10):2335-43. doi: 10.1002/ijc.25582.
20.	Wang YC, etal., J Biol Chem. 2011 Jun 17;286(24):21742-54. Epub 2011 Apr 6.

Additional References at PubMed

PMID:15489334	PMID:19029245

Genomics

Comparative Map Data

Ppp2r2b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	34,653,716 - 35,080,889 (-)	NCBI
Rnor_6.0 Ensembl	18	36,985,714 - 37,245,809 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	18	36,985,709 - 37,421,383 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	18	36,647,298 - 37,076,455 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	35,865,837 - 36,318,308 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	18	35,901,503 - 36,179,323 (-)	NCBI
Celera	18	34,248,471 - 34,670,726 (-)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

PPP2R2B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	5	146,581,146 - 147,084,784 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	5	146,580,742 - 147,084,784 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	5	146,580,742 - 147,081,520 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	5	145,960,305 - 146,461,083 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	145,949,260 - 146,441,207 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	5	145,949,261 - 146,441,207	NCBI
Celera	5	142,050,506 - 142,543,249 (-)	NCBI
Cytogenetic Map	5	q32	NCBI
HuRef	5	141,115,900 - 141,608,335 (-)	NCBI		HuRef
CHM1_1	5	145,401,722 - 145,893,553 (-)	NCBI		CHM1_1

Ppp2r2b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	42,777,811 - 43,192,842 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	18	42,770,497 - 43,216,192 (-)	Ensembl
GRCm38	18	42,645,207 - 43,059,471 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	42,637,432 - 43,059,471 (-)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	18	42,637,432 - 43,083,127 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	42,804,923 - 43,219,125 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	18	42,771,242 - 43,184,802 (-)	NCBI			mm8
Celera	18	44,014,172 - 44,430,759 (-)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI

Ppp2r2b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	7,090,671 - 7,511,995 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	7,054,296 - 7,510,179 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPP2R2B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	148,050,581 - 148,533,583 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	148,050,581 - 148,533,329 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	142,037,831 - 142,521,655 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

PPP2R2B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	41,005,259 - 41,447,048 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	41,005,644 - 41,459,878 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	38,048,790 - 38,488,981 (-)	NCBI
ROS_Cfam_1.0	2	41,461,404 - 41,901,150 (-)	NCBI
UMICH_Zoey_3.1	2	38,535,055 - 38,978,764 (-)	NCBI
UNSW_CanFamBas_1.0	2	39,344,752 - 39,785,267 (-)	NCBI
UU_Cfam_GSD_1.0	2	40,170,245 - 40,610,151 (-)	NCBI

Ppp2r2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	146,081,945 - 146,522,525 (+)	NCBI
SpeTri2.0	NW_004936504	7,655,924 - 8,097,125 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPP2R2B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	147,937,439 - 148,411,731 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	147,938,074 - 148,422,825 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	154,429,929 - 154,517,148 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPP2R2B
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	49,164,026 - 49,645,347 (-)	NCBI
Vero_WHO_p1.0	NW_023666034	28,133,756 - 28,621,365 (+)	NCBI

Ppp2r2b
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624774	6,081,818 - 6,539,226 (-)	NCBI

Position Markers

D18Rat139

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,710,216 - 34,710,448 (+)	MAPPER
Rnor_6.0	18	37,042,221 - 37,042,452	NCBI	Rnor6.0
Rnor_5.0	18	36,703,395 - 36,703,626	UniSTS	Rnor5.0
RGSC_v3.4	18	35,922,193 - 35,922,425	RGD	RGSC3.4
RGSC_v3.4	18	35,922,194 - 35,922,425	UniSTS	RGSC3.4
RGSC_v3.1	18	35,957,459 - 35,957,691	RGD
Celera	18	34,304,851 - 34,305,082	UniSTS
SHRSP x BN Map	18	17.1699	RGD
SHRSP x BN Map	18	17.1699	UniSTS
Cytogenetic Map	18	p11	UniSTS

D18Got80

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,891,756 - 34,891,899 (+)	MAPPER
Rnor_6.0	18	37,224,298 - 37,224,440	NCBI	Rnor6.0
Rnor_5.0	18	36,884,885 - 36,885,027	UniSTS	Rnor5.0
RGSC_v3.4	18	36,122,754 - 36,122,897	RGD	RGSC3.4
RGSC_v3.4	18	36,122,755 - 36,122,897	UniSTS	RGSC3.4
RGSC_v3.1	18	36,158,020 - 36,158,163	RGD
Celera	18	34,482,873 - 34,483,015	UniSTS
Cytogenetic Map	18	p11	UniSTS

D18Chm46

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	35,035,986 - 35,036,216 (+)	MAPPER
Rnor_6.0	18	37,375,987 - 37,376,216	NCBI	Rnor6.0
Rnor_5.0	18	37,031,940 - 37,032,169	UniSTS	Rnor5.0
RGSC_v3.4	18	36,268,700 - 36,268,929	UniSTS	RGSC3.4
Cytogenetic Map	18	p11	UniSTS

D18Got126

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	18	34,523,700 - 34,523,883	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH127928

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,653,895 - 34,654,084 (+)	MAPPER
Rnor_6.0	18	36,985,889 - 36,986,077	NCBI	Rnor6.0
Rnor_5.0	18	36,647,478 - 36,647,666	UniSTS	Rnor5.0
RGSC_v3.4	18	35,865,968 - 35,866,156	UniSTS	RGSC3.4
Celera	18	34,248,651 - 34,248,839	UniSTS
Cytogenetic Map	18	p11	UniSTS

AU047127

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,669,428 - 34,669,580 (+)	MAPPER
Rnor_6.0	18	37,001,422 - 37,001,573	NCBI	Rnor6.0
Rnor_5.0	18	36,663,011 - 36,663,162	UniSTS	Rnor5.0
RGSC_v3.4	18	35,881,501 - 35,881,652	UniSTS	RGSC3.4
Celera	18	34,264,184 - 34,264,335	UniSTS
Cytogenetic Map	18	p11	UniSTS

AU048553

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,805,553 - 34,805,821 (+)	MAPPER
Rnor_6.0	18	37,137,923 - 37,138,190	NCBI	Rnor6.0
Rnor_5.0	18	36,798,929 - 36,799,196	UniSTS	Rnor5.0
RGSC_v3.4	18	36,018,045 - 36,018,312	UniSTS	RGSC3.4
Celera	18	34,396,765 - 34,397,032	UniSTS
Cytogenetic Map	18	p11	UniSTS

AU048718

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	34,977,075 - 34,977,264 (+)	MAPPER
Rnor_6.0	18	37,315,939 - 37,316,127	NCBI	Rnor6.0
Rnor_5.0	18	36,973,415 - 36,973,603	UniSTS	Rnor5.0
RGSC_v3.4	18	36,209,474 - 36,209,662	UniSTS	RGSC3.4
Celera	18	34,567,235 - 34,567,423	UniSTS
Cytogenetic Map	18	p11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	38195967	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	38195967	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	38753381	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4407513	62570466	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5430134	41781619	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14678852	59678852	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	15539427	53861431	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	15539427	61499684	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	15539671	61985648	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	15695872	68524999	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	15695872	87080053	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	15695872	87080053	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	19031030	68436105	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	20285758	87080053	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	21639491	66639491	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	22603736	87074531	Rat
6903353	Bp353	Blood pressure QTL 353	2.8		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	22604764	61985648	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	23184227	53861431	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25961026	81761656	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26743404	43659626	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	27743024	48499517	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	27743024	48499517	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	27743024	48499517	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	27743024	48499517	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	27743024	48499517	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	27743024	48499517	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	27743024	48499517	Rat
2300157	Bmd66	Bone mineral density QTL 66	13.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	18	30533614	75533614	Rat
2300177	Bmd65	Bone mineral density QTL 65	19.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	18	30533614	75533614	Rat
2293704	Bss35	Bone structure and strength QTL 35	4.59	0.0002	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	18	30533614	75533614	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	31361341	76361341	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	31361341	76361341	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	31361341	76361341	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	31361341	76361341	Rat
738005	Anxrr11	Anxiety related response QTL 11	3.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	18	31608424	76608424	Rat
61383	Bp47	Blood pressure QTL 47	17.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	31728373	62570429	Rat
1331776	Bp225	Blood pressure QTL 225	2.829		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	32670352	61985812	Rat
1331774	Bp226	Blood pressure QTL 226	4.41065		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	32670352	61985812	Rat
1331742	Bp228	Blood pressure QTL 228	3.88752		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	32670352	61985812	Rat
1331798	Bp224	Blood pressure QTL 224	3.53873		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	32670352	61985812	Rat
1331727	Bp237	Blood pressure QTL 237	3.053		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	32670352	63897621	Rat
61429	Cia17	Collagen induced arthritis QTL 17	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	18	32670352	73016546	Rat
2303120	Mamtr8	Mammary tumor resistance QTL 8		0.001	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	18	32670352	87080053	Rat
6903347	Bp350	Blood pressure QTL 350	4.4		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	32670473	61985648	Rat
631274	Sprol1	Serum protein level QTL 1	5.3		blood total protein amount (VT:0005567)	serum total protein level (CMO:0000661)	18	32704022	80696226	Rat

Genetic Models

This gene Ppp2r2b is modified in the following models/strains

F344-Ppp2r2b^{Tn(sb-T2/Bart3)2.239Mcwi}

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	479
Count of miRNA genes:	253
Interacting mature miRNAs:	299
Transcripts:	ENSRNOT00000041188
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			4	4		4			68	2	26
Low	3	42	48	37	6	37	7	9	6	33	15	10	7
Below cutoff		1	5		13		1	2				1	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_073588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY251277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB692853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D14421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D38260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV721136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM080850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000041188 ⟹ ENSRNOP00000041264

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	36,985,714 - 37,096,132 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079585 ⟹ ENSRNOP00000071824

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	36,986,162 - 37,245,809 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091634 ⟹ ENSRNOP00000071716

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	18	36,986,095 - 37,132,223 (-)	Ensembl

RefSeq Acc Id:

NM_022209 ⟹ NP_071545

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 35,080,666 (-)	NCBI
Rnor_6.0	18	36,985,709 - 37,421,383 (-)	NCBI
Rnor_5.0	18	36,647,298 - 37,076,455 (-)	NCBI
RGSC_v3.4	18	35,865,837 - 36,318,308 (-)	RGD
Celera	18	34,248,471 - 34,670,726 (-)	NCBI

Sequence:

show sequence

TGTAAGGCATTGCTTCCTAGCGCTGATGGCAAAATGGGACCCATCTCCAGTTATTCCTTGGGCT
TCCCAGCTCTGCAGATCTGGGAGAGAACCTACATAAACATATTGGTGATGTAGCCAGCTTTCAA
GGCTGAGAGAATCCTTATGGATTCGGGAGACTGGTTTTTCATTTAGAATTTTCTTTTTCCTTTG
GAAGATGAAATGCTTCTCTCGTTACCTGCCTTATATCTTCAGACCTCCAAATACCATCCTCTCT
TCCAGCTGCCACACTGAAGCTGACATTATCTCTACGGTAGAATTCAACCACACTGGAGAGTTAC
TAGCGACGGGGGACAAGGGGGGTAGGGTTGTAATATTTCAGCGAGAACAGGAGAGTAAAAATCA
GGTTCATCGTAGGGGTGAATACAATGTTTACAGCACATTCCAGAGCCATGAACCCGAGTTCGAT
TACCTGAAAAGTTTAGAAATAGAAGAAAAAATCAATAAAATAAGATGGCTCCCTCAACAAAATG
CAGCTTACTTTCTTCTGTCTACCAACGATAAAACTGTGAAGCTATGGAAAGTTAGTGAGCGTGA
TAAGAGGCCAGAAGGCTACAACCTGAAAGATGAGGAGGGCCGGCTCCGGGATCCTGCCACCATC
ACAACCCTGCGGGTGCCTGTCCTGAGACCCATGGACTTGATGGTGGAGGCCACCCCACGAAGAG
TGTTTGCCAATGCGCACACATACCACATCAACTCCATATCTGTCAACAGCGACTATGAGACCTA
CATGTCTGCTGATGACCTGAGGATTAACCTGTGGAACTTTGAGATAACCAATCAGAGTTTTAAT
ATCGTGGACATCAAGCCAGCCAACATGGAGGAGCTCACAGAAGTGATCACAGCAGCCGAGTTCC
ACCCCCACCACTGCAACACCTTTGTATACAGCAGCAGCAAGGGGACAATCCGGCTGTGTGACAT
GCGGGCATCTGCGCTGTGTGACAGGCACACCAAGTTTTTTGAAGAGCCAGAAGATCCAAGCAAT
AGATCGTTTTTCTCTGAAATTATCTCTTCAATTTCGGATGTGAAGTTCAGCCACAGTGGGAGGT
ATATCATGACCAGAGACTATCTGACCGCGAAAGTCTGGGATCTCAACATGGAAAATCGCCCCGT
AGAGACATACCAGGTTCATGACTACCTCCGTAGCAAGTTGTGCTCCCTCTACGAAAATGACTGC
ATTTTTGATAAATTCGAGTGTGTGTGGAATGGGTCAGACAGCGTCATCATGACGGGCTCCTACA
ATAACTTCTTCAGGATGTTCGACCGAAACACCAAGCGTGATGTGACCCTTGAGGCCTCAAGGGA
AAACAGCAAACCCCGGGCTATCCTCAAACCCCGAAAAGTGTGCGTCGGGGGCAAGCGAAGAAAA
GATGAGATCAGTGTTGACAGTCTGGACTTTAGCAAAAAGATCTTGCATACAGCTTGGCATCCTT
CAGAAAATATTATAGCAGTGGCGGCTACAAATAACTTATATATATTCCAGGACAAGGTTAATTA
GGAGGACAAGTTACTACTTAGTCTCACATACTGAATACTAGTCAAACAAGTTTTTAAATGTTTC
TTTGGGTCTTCATTTTGATGCATTGACTTTCATTTCCCTCTGCATAAAACAATTGGAATAGAAC
TTAAAAGGAGTTCAATGTTCTCAACTCCCCAATTCTAAGAAACGTCTGTCAAACTCGGTAGGCT
TGGGACACTTCTGTTTAGAGTTGAGAGCTGCCAACGGCAGTAACTCTTCCACAGTCCACTGAAT
GTCTGATGCGTTCGTTCATTGCCCAGTTCTCTCTGGTGGGTTCTGTGTTTTGTTTCTAGGTGTC
TGCTGCGATAAAATGAGATTGTCTGTAGTATTTAAGGAGAAAAAGAGATAAGGTTTTTTTTTTA
ATTAAGCAATTCCATTTGTTTGAAAAAAATCAACAACAAAAAAATAAACACTGTTTACTCTTAA
GAAAAA

hide sequence

RefSeq Acc Id:

NR_073588

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,055 (-)	NCBI
Rnor_6.0	18	36,985,709 - 37,291,494 (-)	NCBI
Rnor_5.0	18	36,647,298 - 37,076,455 (-)	NCBI
Celera	18	34,248,471 - 34,542,212 (-)	NCBI

Sequence:

show sequence

CCAAGAACACTGGGCTGCCTCTTAAGACCTAGTTGGCAGTCCAATATGTGAGTAACTCCAGAAC
AGCAGGGGGGGAGAAAAGGTCAATTGGGAATATCTGATAGATACTGAAAGCCCTGGAGAGATGT
TTGTGTTAACAAGGACAACAAAAAGGTTTGCACCTGAAAGTGGCAGTTAAACTCAGCCTGAGGC
TTGCAGTATGCCTCTGAAGTCACAGCAAAAATCCTTACGTCCTTCCCGGGCAGACAAGTTCTCC
ACAGGACAAGCGGCCTGAATGAAGCTTTTCTCAGGCTTGGACCATGGTGCAGTCCCACTGGCTC
CCCTGCCCCCCTCTCCTGTGAGACTGGCTGCGGGGTGGGATCATGGATACTTGTCTGCCGGCTT
CTGGTTCCCACGCAAGTAAGCCTGCTGTCAATGGAGGAGGACATTGATACCCGCAAAATCAACA
ACAGTTTCCTGCGCGACCACAGCTATGCAACCGAAGCTGACATTATCTCTACGGTAGAATTCAA
CCACACTGGAGAGTTACTAGCGACGGGGGACAAGGGGGGTAGGGTTGTAATATTTCAGCGAGAA
CAGGAGAGTAAAAATCAGGTTCATCGTAGGGGTGAATACAATGTTTACAGCACATTCCAGAGCC
ATGAACCCGAGTTCGATTACCTGAAAAGTTTAGAAATAGAAGAAAAAATCAATAAAATAAGATG
GCTCCCTCAACAAAATGCAGCTTACTTTCTTCTGTCTACCAACGATAAAACTGTGAAGCTATGG
AAAGTTAGTGAGCGTGATAAGAGGCCAGAAGGCTACAACCTGAAAGATGAGGAGGGCCGGCTCC
GGGATCCTGCCACCATCACAACCCTGCGGGTGCCTGTCCTGAGACCCATGGACTTGATGGTGGA
GGCCACCCCACGAAGAGTGTTTGCCAATGCGCACACATACCACATCAACTCCATATCTGTCAAC
AGCGACTATGAGACCTACATGTCTGCTGATGACCTGAGGATTAACCTGTGGAACTTTGAGATAA
CCAATCAGAGTTTTAATATCGTGGACATCAAGCCAGCCAACATGGAGGAGCTCACAGAAGTGAT
CACAGCAGCCGAGTTCCACCCCCACCACTGCAACACCTTTGTATACAGCAGCAGCAAGGGGACA
ATCCGGCTGTGTGACATGCGGGCATCTGCGCTGTGTGACAGGCACACCAAGTTTTTTGAAGAGC
CAGAAGATCCAAGCAATAGATCGTTTTTCTCTGAAATTATCTCTTCAATTTCGGATGTGAAGTT
CAGCCACAGTGGGAGGTATATCATGACCAGAGACTATCTGACCGCGAAAGTCTGGGATCTCAAC
ATGGAAAATCGCCCCGTAGAGACATACCAGGTTCATGACTACCTCCGTAGCAAGTTGTGCTCCC
TCTACGAAAATGACTGCATTTTTGATAAATTCGAGTGTGTGTGGAATGGGTCAGACAGCGTCAT
CATGACGGGCTCCTACAATAACTTCTTCAGGATGTTCGACCGAAACACCAAGCGTGATGTGACC
CTTGAGGCCTCAAGGGAAAACAGCAAACCCCGGGCTATCCTCAAACCCCGAAAAGTGTGCGTCG
GGGGCAAGCGAAGAAAAGATGAGATCAGTGTTGACAGTCTGGACTTTAGCAAAAAGATCTTGCA
TACAGCTTGGCATCCTTCAGAAAATATTATAGCAGTGGCGGCTACAAATAACTTATATATATTC
CAGGACAAGGTTAATTAGGAGGACAAGTTACTACTTAGTCTCACATACTGAATACTAGTCAAAC
AAGTTTTTAAATGTTTCTTTGGGTCTTCATTTTGATGCATTGACTTTCATTTCCCTCTGCATAA
AACAATTGGAATAGAACTTAAAAGGAGTTCAATGTTCTCAACTCCCCAATTCTAAGAAACGTCT
GTCAAACTCGGTAGGCTTGGGACACTTCTGTTTAGAGTTGAGAGCTGCCAACGGCAGTAACTCT
TCCACAGTCCACTGAATGTCTGATGCGTTCGTTCATTGCCCAGTTCTCTCTGGTGGGTTCTGTG
TTTTGTTTCTAGGTGTCTGCTGCGATAAAATGAGATTGTCTGTAGTATTTAAGGAGAAAAAGAG
ATAAGGTTTTTTTTTTAATTAAGCAATTCCATTTGTTTGAAAAAAATCAACAACAAAAAAATAA
ACACTGTTTACTCTTAAGAAAAA

hide sequence

RefSeq Acc Id:

XM_017601025 ⟹ XP_017456514

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	36,985,712 - 37,246,723 (-)	NCBI

Sequence:

show sequence

GGGGAGATACTGGAACAGCTCATCCACGCCTTTTTCTTTTCAGTGAACCTGCACGCTCCCACTT
GCTGTCCAGGTGTCCTTGGCTGCTGCTTGCACCCCTCTGCAGCAGAGAGCAGCCGCAGCCTCTG
CCTGGACTCCCACTGCTACTGGGGAAGAGTCCTGGGGCTGCTGACGCGGTTGGGAGGAGCCTCG
CTTTTAATGCACCAGCCGCCTCCAGCCTCCTGCAGCAGCAGCAGCACCAGCAGCAGCTGCGAGT
GCGCCCCTGTGGGTGTGAGGGTGAGAGCGCTGGCGCCGGCCACAGCGCCCTGCCTAGCTCCCCG
CCAGCTTCCCTAGCCCCCGTCTGCGGGAGCCGCCCTCCCGTGGGACCAGCACCCTCATCTCAGC
AAGGCAAGCCTGAATCCTGCCCCTGCCATCTCGCCCCTGCAGTGTGGGTCCGGAAAGGCACCAT
TTTGTCGCGGCTGCCCGCTCTCCCAGGGGGAGGAGGGTTCTTATTTTTTGCATTTTGGAGCCGC
TGCCTGCCAAGGGGAACCTGTTGGGCATCTCCCCAGCCCTACTCGGGAACGTCTCCGGGGTGGG
CGGGCAGGACCAGACCCCTCGTGGAGGACACAGAGCTTCCTGGTACCCAGAGGCAGAGGAGGCA
GGCGCAGCATCCTCGCTGGGAATTGGAGCTGAAGCTTGGACCATGGTGCAGTCCCACTGGCTCC
CCTGCCCCCCTCTCCTGTGAGACTGGCTGCGGGGTGGGATCATGGATACTTGTCTGCCGGCTTC
TGGTTCCCACGCAAGTAAGCCTGCTGTCAATGGAGGAGGACATTGATACCCGCAAAATCAACAA
CAGTTTCCTGCGCGACCACAGCTATGCAACCGAAGCTGACATTATCTCTACGGTAGAATTCAAC
CACACTGGAGAGTTACTAGCGACGGGGGACAAGGGGGGTAGGGTTGTAATATTTCAGCGAGAAC
AGGAGAGTAAAAATCAGGTTCATCGTAGGGGTGAATACAATGTTTACAGCACATTCCAGAGCCA
TGAACCCGAGTTCGATTACCTGAAAAGTTTAGAAATAGAAGAAAAAATCAATAAAATAAGATGG
CTCCCTCAACAAAATGCAGCTTACTTTCTTCTGTCTACCAACGATAAAACTGTGAAGCTATGGA
AAGTTAGTGAGCGTGATAAGAGGCCAGAAGGCTACAACCTGAAAGATGAGGAGGGCCGGCTCCG
GGATCCTGCCACCATCACAACCCTGCGGGTGCCTGTCCTGAGACCCATGGACTTGATGGTGGAG
GCCACCCCACGAAGAGTGTTTGCCAATGCGCACACATACCACATCAACTCCATATCTGTCAACA
GCGACTATGAGACCTACATGTCTGCTGATGACCTGAGGATTAACCTGTGGAACTTTGAGATAAC
CAATCAGAGTTTTAATATCGTGGACATCAAGCCAGCCAACATGGAGGAGCTCACAGAAGTGATC
ACAGCAGCCGAGTTCCACCCCCACCACTGCAACACCTTTGTATACAGCAGCAGCAAGGGGACAA
TCCGGCTGTGTGACATGCGGGCATCTGCGCTGTGTGACAGGCACACCAAGTTTTTTGAAGAGCC
AGAAGATCCAAGCAATAGATCGTTTTTCTCTGAAATTATCTCTTCAATTTCGGATGTGAAGTTC
AGCCACAGTGGGAGGTATATCATGACCAGAGACTATCTGACCGCGAAAGTCTGGGATCTCAACA
TGGAAAATCGCCCCGTAGAGACATACCAGGTTCATGACTACCTCCGTAGCAAGTTGTGCTCCCT
CTACGAAAATGACTGCATTTTTGATAAATTCGAGTGTGTGTGGAATGGGTCAGACAGCGTCATC
ATGACGGGCTCCTACAATAACTTCTTCAGGATGTTCGACCGAAACACCAAGCGTGATGTGACCC
TTGAGGCCTCAAGGGAAAACAGCAAACCCCGGGCTATCCTCAAACCCCGAAAAGTGTGCGTCGG
GGGCAAGCGAAGAAAAGATGAGATCAGTGTTGACAGTCTGGACTTTAGCAAAAAGATCTTGCAT
ACAGCTTGGCATCCTTCAGAAAATATTATAGCAGTGGCGGCTACAAATAACTTATATATATTCC
AGGACAAGGTTAATTAGGAGGACAAGTTACTACTTAGTCTCACATACTGAATACTAGTCAAACA
AGTTTTTAAATGTTTCTTTGGGTCTTCATTTTGATGCATTGACTTTCATTTCCCTCTGCATAAA
ACAATTGGAATAGAACTTAAAAGGAGTTCAATGTTCTCAACTCCCCAATTCTAAGAAACGTCTG
TCAAACTCGGTAGGCTTGGGACACTTCTGTTTAGAGTTGAGAGCTGCCAACGGCAGTAACTCTT
CCACAGTCCACTGAATGTCTGATGCGTTCGTTCATTGCCCAGTTCTCTCTGGTGGGTTCTGTGT
TTTGTTTCTAGGTGTCTGCTGCGATAAAATGAGATTGTCTGTAGTATTTAAGGAGAAAAAGAGA
TAAGGTTTTTTTTTTAATTAAGCAATTCCATTTGTTTGAAAAAAATCAACAACAAAAAAATAAA
CACTGTTTACTCTTAA

hide sequence

RefSeq Acc Id:

XM_017601026 ⟹ XP_017456515

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,823,414 (-)	NCBI
Rnor_6.0	18	36,985,712 - 37,155,807 (-)	NCBI

Sequence:

show sequence

CCCAGGTTAGCATGAATCTTAAGATCGTCCTGTTTGTGCCCAGCAGGTGTTAACGTTCCAGGTT
GTCAAGCCAGTTATCTTGGCCTTTGAACATTTTGTATTGGTGCTGAGTGATGACCAGTCATCAA
AGAGCTGACATTATCTCTACGGTAGAATTCAACCACACTGGAGAGTTACTAGCGACGGGGGACA
AGGGGGGTAGGGTTGTAATATTTCAGCGAGAACAGGAGAGTAAAAATCAGGTTCATCGTAGGGG
TGAATACAATGTTTACAGCACATTCCAGAGCCATGAACCCGAGTTCGATTACCTGAAAAGTTTA
GAAATAGAAGAAAAAATCAATAAAATAAGATGGCTCCCTCAACAAAATGCAGCTTACTTTCTTC
TGTCTACCAACGATAAAACTGTGAAGCTATGGAAAGTTAGTGAGCGTGATAAGAGGCCAGAAGG
CTACAACCTGAAAGATGAGGAGGGCCGGCTCCGGGATCCTGCCACCATCACAACCCTGCGGGTG
CCTGTCCTGAGACCCATGGACTTGATGGTGGAGGCCACCCCACGAAGAGTGTTTGCCAATGCGC
ACACATACCACATCAACTCCATATCTGTCAACAGCGACTATGAGACCTACATGTCTGCTGATGA
CCTGAGGATTAACCTGTGGAACTTTGAGATAACCAATCAGAGTTTTAATATCGTGGACATCAAG
CCAGCCAACATGGAGGAGCTCACAGAAGTGATCACAGCAGCCGAGTTCCACCCCCACCACTGCA
ACACCTTTGTATACAGCAGCAGCAAGGGGACAATCCGGCTGTGTGACATGCGGGCATCTGCGCT
GTGTGACAGGCACACCAAGTTTTTTGAAGAGCCAGAAGATCCAAGCAATAGATCGTTTTTCTCT
GAAATTATCTCTTCAATTTCGGATGTGAAGTTCAGCCACAGTGGGAGGTATATCATGACCAGAG
ACTATCTGACCGCGAAAGTCTGGGATCTCAACATGGAAAATCGCCCCGTAGAGACATACCAGGT
TCATGACTACCTCCGTAGCAAGTTGTGCTCCCTCTACGAAAATGACTGCATTTTTGATAAATTC
GAGTGTGTGTGGAATGGGTCAGACAGCGTCATCATGACGGGCTCCTACAATAACTTCTTCAGGA
TGTTCGACCGAAACACCAAGCGTGATGTGACCCTTGAGGCCTCAAGGGAAAACAGCAAACCCCG
GGCTATCCTCAAACCCCGAAAAGTGTGCGTCGGGGGCAAGCGAAGAAAAGATGAGATCAGTGTT
GACAGTCTGGACTTTAGCAAAAAGATCTTGCATACAGCTTGGCATCCTTCAGAAAATATTATAG
CAGTGGCGGCTACAAATAACTTATATATATTCCAGGACAAGGTTAATTAGGAGGACAAGTTACT
ACTTAGTCTCACATACTGAATACTAGTCAAACAAGTTTTTAAATGTTTCTTTGGGTCTTCATTT
TGATGCATTGACTTTCATTTCCCTCTGCATAAAACAATTGGAATAGAACTTAAAAGGAGTTCAA
TGTTCTCAACTCCCCAATTCTAAGAAACGTCTGTCAAACTCGGTAGGCTTGGGACACTTCTGTT
TAGAGTTGAGAGCTGCCAACGGCAGTAACTCTTCCACAGTCCACTGAATGTCTGATGCGTTCGT
TCATTGCCCAGTTCTCTCTGGTGGGTTCTGTGTTTTGTTTCTAGGTGTCTGCTGCGATAAAATG
AGATTGTCTGTAGTATTTAAGGAGAAAAAGAGATAAGGTTTTTTTTTTAATTAAGCAATTCCAT
TTGTTTGAAAAAAATCAACAACAAAAAAATAAACACTGTTTACTCTTAA

hide sequence

RefSeq Acc Id:

XM_017601027 ⟹ XP_017456516

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	18	36,985,712 - 37,155,530 (-)	NCBI

Sequence:

show sequence

TGTGCACACATGTATGGAAGCCAAAGGGTGACTCTGGCTGTCTTTCTGGGTGCTATCCATCTCA
CTTTTTGAGGTAGACTCTTTCACTGGCCCTGGCTTCACCAGTTCAGTTAGGCTGACCAGACAAT
GAGTGCTAGGAGTCCTGTCTCTGCCTCCCCAGCAGAGAGATTACAAGTGTGGGAGTCATGCCCA
CTTTTCCTTACTGGGGTCTATGAGGAGGGTTGTCAAACCTGGGTCCTTAAACTTATACAGCAGT
GCTTTGCGAACTGAACCATCTCCAGAACCTCCCTGACAAGATAACAATCTCTTTCAAAAGTTAC
ATTTCTTTTTCCATGATGGCTATCCCTGAATCTATTTAACCATCTTCCTTTGGATGTAATTTGG
GTTGTTTCCAACTTTCTGCTCTGGTACAGCTTATGAATAGAAATATAGCTTATGGTACAGAAAA
AGAAAAGCCCATGTTCATGTGTTAGAGGCCTCCCACGAACAGAGACTTAGAACTCACCGGGTAC
ATAGTCTGACCTCTTAGAGGTTCTTACATTCCATTCTCTGCACTTGACAAGTCAAAGTGAGGAG
TATAGTCTGAAGGCTTGCAGAAAGACAGGATATTGGGTACAGATTCCCTGCCCGAGTCTTACTC
TATGATCTAACAGTGCCAGGAGGCCTCTCTTAAACTGCAAAGTATACCAAGTGTACCAAGAAAT
GTGCATTAGCTTAGCTGTATGGACTAAAGACATTAGCTAAGCTATAAGGACAGTTCGATGAGCA
TCTAACAAGCAAGAGAAGCTGGAACCATTTTTATATAACCATGCCCTAGCTCCAGATTCACTCC
AGTGAATGAAAGAGACAGATTTGGGTAGACAACTCATCTTCCTGGGCTCAAGTGATGCTTGAGT
TTGTTAGCACTAGTATAAATCATTTCCAGGGTAATCCCCTCTATCAAAACCACATGCATCCTTC
TCAGGATTTATACTTAACTAAATTTTAGTCAAGAGTGAGTATGCCTCATGTCAATGGGCCCATG
TGCAACGGACCTGAGAATGATTGACAGCACAGGACAGAGATTAAAAAAATTAATAGCACCTGTT
CACAAGGGATTTATTGTGTCTGGTGATCACAAGCTGAGACCTTATCTCCTGTCTCCAGGTTGTC
AAGCCAGTTATCTTGGCCTTTGAACATTTTGTATTGGTGCTGAGTGATGACCAGTCATCAAAGA
GCTGACATTATCTCTACGGTAGAATTCAACCACACTGGAGAGTTACTAGCGACGGGGGACAAGG
GGGGTAGGGTTGTAATATTTCAGCGAGAACAGGAGAGTAAAAATCAGGTTCATCGTAGGGGTGA
ATACAATGTTTACAGCACATTCCAGAGCCATGAACCCGAGTTCGATTACCTGAAAAGTTTAGAA
ATAGAAGAAAAAATCAATAAAATAAGATGGCTCCCTCAACAAAATGCAGCTTACTTTCTTCTGT
CTACCAACGATAAAACTGTGAAGCTATGGAAAGTTAGTGAGCGTGATAAGAGGCCAGAAGGCTA
CAACCTGAAAGATGAGGAGGGCCGGCTCCGGGATCCTGCCACCATCACAACCCTGCGGGTGCCT
GTCCTGAGACCCATGGACTTGATGGTGGAGGCCACCCCACGAAGAGTGTTTGCCAATGCGCACA
CATACCACATCAACTCCATATCTGTCAACAGCGACTATGAGACCTACATGTCTGCTGATGACCT
GAGGATTAACCTGTGGAACTTTGAGATAACCAATCAGAGTTTTAATATCGTGGACATCAAGCCA
GCCAACATGGAGGAGCTCACAGAAGTGATCACAGCAGCCGAGTTCCACCCCCACCACTGCAACA
CCTTTGTATACAGCAGCAGCAAGGGGACAATCCGGCTGTGTGACATGCGGGCATCTGCGCTGTG
TGACAGGCACACCAAGTTTTTTGAAGAGCCAGAAGATCCAAGCAATAGATCGTTTTTCTCTGAA
ATTATCTCTTCAATTTCGGATGTGAAGTTCAGCCACAGTGGGAGGTATATCATGACCAGAGACT
ATCTGACCGCGAAAGTCTGGGATCTCAACATGGAAAATCGCCCCGTAGAGACATACCAGGTTCA
TGACTACCTCCGTAGCAAGTTGTGCTCCCTCTACGAAAATGACTGCATTTTTGATAAATTCGAG
TGTGTGTGGAATGGGTCAGACAGCGTCATCATGACGGGCTCCTACAATAACTTCTTCAGGATGT
TCGACCGAAACACCAAGCGTGATGTGACCCTTGAGGCCTCAAGGGAAAACAGCAAACCCCGGGC
TATCCTCAAACCCCGAAAAGTGTGCGTCGGGGGCAAGCGAAGAAAAGATGAGATCAGTGTTGAC
AGTCTGGACTTTAGCAAAAAGATCTTGCATACAGCTTGGCATCCTTCAGAAAATATTATAGCAG
TGGCGGCTACAAATAACTTATATATATTCCAGGACAAGGTTAATTAGGAGGACAAGTTACTACT
TAGTCTCACATACTGAATACTAGTCAAACAAGTTTTTAAATGTTTCTTTGGGTCTTCATTTTGA
TGCATTGACTTTCATTTCCCTCTGCATAAAACAATTGGAATAGAACTTAAAAGGAGTTCAATGT
TCTCAACTCCCCAATTCTAAGAAACGTCTGTCAAACTCGGTAGGCTTGGGACACTTCTGTTTAG
AGTTGAGAGCTGCCAACGGCAGTAACTCTTCCACAGTCCACTGAATGTCTGATGCGTTCGTTCA
TTGCCCAGTTCTCTCTGGTGGGTTCTGTGTTTTGTTTCTAGGTGTCTGCTGCGATAAAATGAGA
TTGTCTGTAGTATTTAAGGAGAAAAAGAGATAAGGTTTTTTTTTTAATTAAGCAATTCCATTTG
TTTGAAAAAAATCAACAACAAAAAAATAAACACTGTTTACTCTTAA

hide sequence

RefSeq Acc Id:

XM_017601028 ⟹ XP_017456517

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,102 (-)	NCBI
Rnor_6.0	18	36,985,712 - 37,291,538 (-)	NCBI

Sequence:

show sequence

TCAGACTGTGGAGACCCAGGATGAGAGAGAGTTGGGAGGGAGTACCAAGAACACTGGGCTGCCT
CTTAAGACCTAGTTGGCAGTCCAATATGTGAGTAACTCCAGAACAGCAGGGGGGGAGAAAAGGT
CAATTGGGAATATCTGATAGATACTGAAAGCCCTGGAGAGATGTTTGTGTTAACAAGGACAACA
AAAAGGTTTGCACCTGAAAGTGGCAGTTAAACTCAGCCTGAGGCTTGCAGTATGCCTCTGAAGT
CACAGCAAAAATCCTTACGTCCTTCCCGGGCAGACAAGTTCTCCACAGGACAAGCGGCCTGAAT
GAAGCTTTTCTCAGCTGACATTATCTCTACGGTAGAATTCAACCACACTGGAGAGTTACTAGCG
ACGGGGGACAAGGGGGGTAGGGTTGTAATATTTCAGCGAGAACAGGAGAGTAAAAATCAGGTTC
ATCGTAGGGGTGAATACAATGTTTACAGCACATTCCAGAGCCATGAACCCGAGTTCGATTACCT
GAAAAGTTTAGAAATAGAAGAAAAAATCAATAAAATAAGATGGCTCCCTCAACAAAATGCAGCT
TACTTTCTTCTGTCTACCAACGATAAAACTGTGAAGCTATGGAAAGTTAGTGAGCGTGATAAGA
GGCCAGAAGGCTACAACCTGAAAGATGAGGAGGGCCGGCTCCGGGATCCTGCCACCATCACAAC
CCTGCGGGTGCCTGTCCTGAGACCCATGGACTTGATGGTGGAGGCCACCCCACGAAGAGTGTTT
GCCAATGCGCACACATACCACATCAACTCCATATCTGTCAACAGCGACTATGAGACCTACATGT
CTGCTGATGACCTGAGGATTAACCTGTGGAACTTTGAGATAACCAATCAGAGTTTTAATATCGT
GGACATCAAGCCAGCCAACATGGAGGAGCTCACAGAAGTGATCACAGCAGCCGAGTTCCACCCC
CACCACTGCAACACCTTTGTATACAGCAGCAGCAAGGGGACAATCCGGCTGTGTGACATGCGGG
CATCTGCGCTGTGTGACAGGCACACCAAGTTTTTTGAAGAGCCAGAAGATCCAAGCAATAGATC
GTTTTTCTCTGAAATTATCTCTTCAATTTCGGATGTGAAGTTCAGCCACAGTGGGAGGTATATC
ATGACCAGAGACTATCTGACCGCGAAAGTCTGGGATCTCAACATGGAAAATCGCCCCGTAGAGA
CATACCAGGTTCATGACTACCTCCGTAGCAAGTTGTGCTCCCTCTACGAAAATGACTGCATTTT
TGATAAATTCGAGTGTGTGTGGAATGGGTCAGACAGCGTCATCATGACGGGCTCCTACAATAAC
TTCTTCAGGATGTTCGACCGAAACACCAAGCGTGATGTGACCCTTGAGGCCTCAAGGGAAAACA
GCAAACCCCGGGCTATCCTCAAACCCCGAAAAGTGTGCGTCGGGGGCAAGCGAAGAAAAGATGA
GATCAGTGTTGACAGTCTGGACTTTAGCAAAAAGATCTTGCATACAGCTTGGCATCCTTCAGAA
AATATTATAGCAGTGGCGGCTACAAATAACTTATATATATTCCAGGACAAGGTTAATTAGGAGG
ACAAGTTACTACTTAGTCTCACATACTGAATACTAGTCAAACAAGTTTTTAAATGTTTCTTTGG
GTCTTCATTTTGATGCATTGACTTTCATTTCCCTCTGCATAAAACAATTGGAATAGAACTTAAA
AGGAGTTCAATGTTCTCAACTCCCCAATTCTAAGAAACGTCTGTCAAACTCGGTAGGCTTGGGA
CACTTCTGTTTAGAGTTGAGAGCTGCCAACGGCAGTAACTCTTCCACAGTCCACTGAATGTCTG
ATGCGTTCGTTCATTGCCCAGTTCTCTCTGGTGGGTTCTGTGTTTTGTTTCTAGGTGTCTGCTG
CGATAAAATGAGATTGTCTGTAGTATTTAAGGAGAAAAAGAGATAAGGTTTTTTTTTTAATTAA
GCAATTCCATTTGTTTGAAAAAAATCAACAACAAAAAAATAAACACTGTTTACTCTTAA

hide sequence

RefSeq Acc Id:

XM_017601029 ⟹ XP_017456518

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,102 (-)	NCBI
Rnor_6.0	18	36,985,712 - 37,291,537 (-)	NCBI

Sequence:

show sequence

CAGACTGTGGAGACCCAGGATGAGAGAGAGTTGGGAGGGAGTACCAAGAACACTGGGCTGCCTC
TTAAGACCTAGTTGGCAGTCCAATATGTGAGTAACTCCAGAACAGCAGGGGGGGAGAAAAGGTC
AATTGGGAATATCTGATAGATACTGAAAGCCCTGGAGAGATGTTTGTGTTAACAAGGACAACAA
AAAGGTTTGCACCTGAAAGTGGCAGTTAAACTCAGCCTGAGGCTTGCAGTATGCCTCTGAAGTC
ACAGCAAAAATCCTTACGTCCTTCCCGGGCAGACAAGTTCTCCACAGGACAAGCGGCCTGAATG
AAGCTTTTCTCAGGTATTGATGGTGGACAGCCTTTCTTTTTTGTTTTTAGAACTGTTTACTGAG
AACTCCTTTGTACATCAAGCTGTTGTGCAGAGGACACTCGAAGCTTGATGTAATGGCAGCTGAC
ATTATCTCTACGGTAGAATTCAACCACACTGGAGAGTTACTAGCGACGGGGGACAAGGGGGGTA
GGGTTGTAATATTTCAGCGAGAACAGGAGAGTAAAAATCAGGTTCATCGTAGGGGTGAATACAA
TGTTTACAGCACATTCCAGAGCCATGAACCCGAGTTCGATTACCTGAAAAGTTTAGAAATAGAA
GAAAAAATCAATAAAATAAGATGGCTCCCTCAACAAAATGCAGCTTACTTTCTTCTGTCTACCA
ACGATAAAACTGTGAAGCTATGGAAAGTTAGTGAGCGTGATAAGAGGCCAGAAGGCTACAACCT
GAAAGATGAGGAGGGCCGGCTCCGGGATCCTGCCACCATCACAACCCTGCGGGTGCCTGTCCTG
AGACCCATGGACTTGATGGTGGAGGCCACCCCACGAAGAGTGTTTGCCAATGCGCACACATACC
ACATCAACTCCATATCTGTCAACAGCGACTATGAGACCTACATGTCTGCTGATGACCTGAGGAT
TAACCTGTGGAACTTTGAGATAACCAATCAGAGTTTTAATATCGTGGACATCAAGCCAGCCAAC
ATGGAGGAGCTCACAGAAGTGATCACAGCAGCCGAGTTCCACCCCCACCACTGCAACACCTTTG
TATACAGCAGCAGCAAGGGGACAATCCGGCTGTGTGACATGCGGGCATCTGCGCTGTGTGACAG
GCACACCAAGTTTTTTGAAGAGCCAGAAGATCCAAGCAATAGATCGTTTTTCTCTGAAATTATC
TCTTCAATTTCGGATGTGAAGTTCAGCCACAGTGGGAGGTATATCATGACCAGAGACTATCTGA
CCGCGAAAGTCTGGGATCTCAACATGGAAAATCGCCCCGTAGAGACATACCAGGTTCATGACTA
CCTCCGTAGCAAGTTGTGCTCCCTCTACGAAAATGACTGCATTTTTGATAAATTCGAGTGTGTG
TGGAATGGGTCAGACAGCGTCATCATGACGGGCTCCTACAATAACTTCTTCAGGATGTTCGACC
GAAACACCAAGCGTGATGTGACCCTTGAGGCCTCAAGGGAAAACAGCAAACCCCGGGCTATCCT
CAAACCCCGAAAAGTGTGCGTCGGGGGCAAGCGAAGAAAAGATGAGATCAGTGTTGACAGTCTG
GACTTTAGCAAAAAGATCTTGCATACAGCTTGGCATCCTTCAGAAAATATTATAGCAGTGGCGG
CTACAAATAACTTATATATATTCCAGGACAAGGTTAATTAGGAGGACAAGTTACTACTTAGTCT
CACATACTGAATACTAGTCAAACAAGTTTTTAAATGTTTCTTTGGGTCTTCATTTTGATGCATT
GACTTTCATTTCCCTCTGCATAAAACAATTGGAATAGAACTTAAAAGGAGTTCAATGTTCTCAA
CTCCCCAATTCTAAGAAACGTCTGTCAAACTCGGTAGGCTTGGGACACTTCTGTTTAGAGTTGA
GAGCTGCCAACGGCAGTAACTCTTCCACAGTCCACTGAATGTCTGATGCGTTCGTTCATTGCCC
AGTTCTCTCTGGTGGGTTCTGTGTTTTGTTTCTAGGTGTCTGCTGCGATAAAATGAGATTGTCT
GTAGTATTTAAGGAGAAAAAGAGATAAGGTTTTTTTTTTAATTAAGCAATTCCATTTGTTTGAA
AAAAATCAACAACAAAAAAATAAACACTGTTTACTCTTAA

hide sequence

RefSeq Acc Id:

XM_039097058 ⟹ XP_038952986

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 35,080,889 (-)	NCBI

RefSeq Acc Id:

XM_039097059 ⟹ XP_038952987

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,914,070 (-)	NCBI

RefSeq Acc Id:

XM_039097060 ⟹ XP_038952988

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,104 (-)	NCBI

RefSeq Acc Id:

XM_039097061 ⟹ XP_038952989

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,942,316 (-)	NCBI

RefSeq Acc Id:

XM_039097062 ⟹ XP_038952990

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,799,791 (-)	NCBI

RefSeq Acc Id:

XM_039097063 ⟹ XP_038952991

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,857,103 (-)	NCBI

RefSeq Acc Id:

XM_039097064 ⟹ XP_038952992

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,823,421 (-)	NCBI

RefSeq Acc Id:

XM_039097065 ⟹ XP_038952993

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,104 (-)	NCBI

RefSeq Acc Id:

XM_039097066 ⟹ XP_038952994

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,104 (-)	NCBI

RefSeq Acc Id:

XM_039097067 ⟹ XP_038952995

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,104 (-)	NCBI

RefSeq Acc Id:

XM_039097068 ⟹ XP_038952996

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,104 (-)	NCBI

RefSeq Acc Id:

XM_039097069 ⟹ XP_038952997

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,833,872 (-)	NCBI

RefSeq Acc Id:

XM_039097070 ⟹ XP_038952998

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,914,068 (-)	NCBI

RefSeq Acc Id:

XM_039097071 ⟹ XP_038952999

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,857,099 (-)	NCBI

RefSeq Acc Id:

XM_039097072 ⟹ XP_038953000

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,098 (-)	NCBI

RefSeq Acc Id:

XM_039097073 ⟹ XP_038953001

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	34,653,716 - 34,952,098 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_071545	(Get FASTA)	NCBI Sequence Viewer
	XP_017456515	(Get FASTA)	NCBI Sequence Viewer
	XP_017456517	(Get FASTA)	NCBI Sequence Viewer
	XP_017456518	(Get FASTA)	NCBI Sequence Viewer
	XP_038952986	(Get FASTA)	NCBI Sequence Viewer
	XP_038952987	(Get FASTA)	NCBI Sequence Viewer
	XP_038952988	(Get FASTA)	NCBI Sequence Viewer
	XP_038952989	(Get FASTA)	NCBI Sequence Viewer
	XP_038952990	(Get FASTA)	NCBI Sequence Viewer
	XP_038952991	(Get FASTA)	NCBI Sequence Viewer
	XP_038952992	(Get FASTA)	NCBI Sequence Viewer
	XP_038952993	(Get FASTA)	NCBI Sequence Viewer
	XP_038952994	(Get FASTA)	NCBI Sequence Viewer
	XP_038952995	(Get FASTA)	NCBI Sequence Viewer
	XP_038952996	(Get FASTA)	NCBI Sequence Viewer
	XP_038952997	(Get FASTA)	NCBI Sequence Viewer
	XP_038952998	(Get FASTA)	NCBI Sequence Viewer
	XP_038952999	(Get FASTA)	NCBI Sequence Viewer
	XP_038953000	(Get FASTA)	NCBI Sequence Viewer
	XP_038953001	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78834	(Get FASTA)	NCBI Sequence Viewer
	AAP33142	(Get FASTA)	NCBI Sequence Viewer
	BAA03313	(Get FASTA)	NCBI Sequence Viewer
	BAA07412	(Get FASTA)	NCBI Sequence Viewer
	EDL76491	(Get FASTA)	NCBI Sequence Viewer
	EDL76492	(Get FASTA)	NCBI Sequence Viewer
	EDL76493	(Get FASTA)	NCBI Sequence Viewer
	EDL76494	(Get FASTA)	NCBI Sequence Viewer
	P36877	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_071545 ⟸ NM_022209

- UniProtKB:

P36877 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MKCFSRYLPYIFRPPNTILSSSCHTEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQV
HRRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDK
RPEGYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYM
SADDLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMR
ASALCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVE
TYQVHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASREN
SKPRAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN

hide sequence

RefSeq Acc Id:

XP_017456517 ⟸ XM_017601028

- Peptide Label:

isoform X11

- Sequence:

show sequence

MKLFSADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDY
LKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATIT
TLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNI
VDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNR
SFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQVHDYLRSKLCSLYENDCI
FDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKD
EISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN

hide sequence

RefSeq Acc Id:

XP_017456518 ⟸ XM_017601029

- Peptide Label:

isoform X12

- Sequence:

show sequence

MAADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFDYLKS
LEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATITTLR
VPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFNIVDI
KPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSNRSFF
SEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQVHDYLRSKLCSLYENDCIFDK
FECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRKDEIS
VDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN

hide sequence

RefSeq Acc Id:

XP_017456514 ⟸ XM_017601025

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEEDIDTRKINNSFLRDHSYATEADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRR
GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPE
GYNLKDEEGRLRDPATITTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSAD
DLRINLWNFEITNQSFNIVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASA
LCDRHTKFFEEPEDPSNRSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQ
VHDYLRSKLCSLYENDCIFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKP
RAILKPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN

hide sequence

RefSeq Acc Id:

XP_017456515 ⟸ XM_017601026

- Peptide Label:

isoform X10

- Sequence:

show sequence

MTSHQRADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFD
YLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATI
TTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFN
IVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSN
RSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQVHDYLRSKLCSLYENDC
IFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRK
DEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN

hide sequence

RefSeq Acc Id:

XP_017456516 ⟸ XM_017601027

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTSHQRADIISTVEFNHTGELLATGDKGGRVVIFQREQESKNQVHRRGEYNVYSTFQSHEPEFD
YLKSLEIEEKINKIRWLPQQNAAYFLLSTNDKTVKLWKVSERDKRPEGYNLKDEEGRLRDPATI
TTLRVPVLRPMDLMVEATPRRVFANAHTYHINSISVNSDYETYMSADDLRINLWNFEITNQSFN
IVDIKPANMEELTEVITAAEFHPHHCNTFVYSSSKGTIRLCDMRASALCDRHTKFFEEPEDPSN
RSFFSEIISSISDVKFSHSGRYIMTRDYLTAKVWDLNMENRPVETYQVHDYLRSKLCSLYENDC
IFDKFECVWNGSDSVIMTGSYNNFFRMFDRNTKRDVTLEASRENSKPRAILKPRKVCVGGKRRK
DEISVDSLDFSKKILHTAWHPSENIIAVAATNNLYIFQDKVN

hide sequence

RefSeq Acc Id:

ENSRNOP00000041264 ⟸ ENSRNOT00000041188

RefSeq Acc Id:

ENSRNOP00000071824 ⟸ ENSRNOT00000079585

RefSeq Acc Id:

ENSRNOP00000071716 ⟸ ENSRNOT00000091634

RefSeq Acc Id:	XP_038952986 ⟸ XM_039097058
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038952996 ⟸ XM_039097068
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038952993 ⟸ XM_039097065
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038952988 ⟸ XM_039097060
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038952994 ⟸ XM_039097066
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038952995 ⟸ XM_039097067
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038953001 ⟸ XM_039097073
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038953000 ⟸ XM_039097072
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_038952989 ⟸ XM_039097061
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038952987 ⟸ XM_039097059
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038952998 ⟸ XM_039097070
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038952991 ⟸ XM_039097063
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038952999 ⟸ XM_039097071
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_038952997 ⟸ XM_039097069
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038952992 ⟸ XM_039097064
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038952990 ⟸ XM_039097062
- Peptide Label:	isoform X3

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:631441	AgrOrtholog
Ensembl Genes	ENSRNOG00000018851	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000041264	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000071716	UniProtKB/TrEMBL
	ENSRNOP00000071824	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000041188	UniProtKB/TrEMBL
	ENSRNOT00000079585	UniProtKB/Swiss-Prot
	ENSRNOT00000091634	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7114294	IMAGE-MGC_LOAD
InterPro	PP2A_PR55	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PP2A_PR55_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:60660	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:93454	IMAGE-MGC_LOAD
NCBI Gene	60660	ENTREZGENE
PANTHER	PTHR11871	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ppp2r2b	PhenoGen
PIRSF	PP2A_PR55	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS	PP2APR55	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PR55_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PR55_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	2ABB_RAT	UniProtKB/Swiss-Prot
	A0A0G2K165_RAT	UniProtKB/TrEMBL
	P36877	ENTREZGENE
	Z4YNW7_RAT	UniProtKB/TrEMBL
UniProt Secondary	Q80W84	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Ppp2r2b	protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform	Pppr2b2		Symbol updated	1299863	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in brain and testis	633587

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)