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Gene: Ccbe1 (collagen and calcium binding EGF domains 1) Rattus norvegicus
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Symbol: Ccbe1
Name: collagen and calcium binding EGF domains 1
RGD ID: 1307670
Description: Predicted to have collagen binding activity and protease binding activity. Predicted to be involved in several processes, including positive regulation of gene expression; positive regulation of vascular endothelial growth factor signaling pathway; and positive regulation of vasculature development. Predicted to localize to extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in Hennekam syndrome. Orthologous to human CCBE1 (collagen and calcium binding EGF domains 1); INTERACTS WITH bisphenol A; 1,2-dichloroethane (ortholog); 17beta-estradiol (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen and calcium-binding EGF domain-containing protein 1; LOC361341; RGD1307670; similar to MEGF6 (4P83)
Orthologs:
Homo sapiens (human) : CCBE1 (collagen and calcium binding EGF domains 1)  HGNC  Alliance
Mus musculus (house mouse) : Ccbe1 (collagen and calcium binding EGF domains 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ccbe1 (collagen and calcium binding EGF domains 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CCBE1 (collagen and calcium binding EGF domains 1)
Canis lupus familiaris (dog) : CCBE1 (collagen and calcium binding EGF domains 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ccbe1 (collagen and calcium binding EGF domains 1)
Sus scrofa (pig) : CCBE1 (collagen and calcium binding EGF domains 1)
Chlorocebus sabaeus (African green monkey) : CCBE1 (collagen and calcium binding EGF domains 1)
Heterocephalus glaber (naked mole-rat) : Ccbe1 (collagen and calcium binding EGF domains 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01861,758,754 - 62,013,194 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1861,759,289 - 61,788,863 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01860,953,314 - 61,204,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41862,407,265 - 62,442,194 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11862,444,950 - 62,516,306 (+)NCBI
Celera1857,703,958 - 57,944,773 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Ccbe1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1307670
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.