Tcof1 (treacle ribosome biogenesis factor 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tcof1 (treacle ribosome biogenesis factor 1) Rattus norvegicus
Analyze
Symbol: Tcof1
Name: treacle ribosome biogenesis factor 1
RGD ID: 1309850
Description: Predicted to enable protein heterodimerization activity; protein-macromolecule adaptor activity; and scaffold protein binding activity. Predicted to be involved in mesenchymal cell differentiation; nucleolar large rRNA transcription by RNA polymerase I; and regulation of translation. Predicted to be located in cytosol; fibrillar center; and nucleoplasm. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in Treacher Collins syndrome and Treacher Collins syndrome 1. Orthologous to human TCOF1 (treacle ribosome biogenesis factor 1); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291571; Treacher Collins Franceschetti syndrome 1, homolog; Treacher Collins-Franceschetti syndrome 1; Treacher Collins-Franceschetti syndrome 1 homolog; Treacher Collins-Franceschetti syndrome 1 homolog (human); treacle protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,537,437 - 56,570,727 (-)NCBIGRCr8
mRatBN7.21854,267,015 - 54,300,324 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,267,026 - 54,300,324 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,355,725 - 56,389,132 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,070,341 - 57,103,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01854,890,926 - 54,924,212 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,081,863 - 56,115,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,082,195 - 56,115,593 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,316,277 - 55,350,440 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,766,742 - 56,800,908 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11856,838,954 - 56,873,215 (-)NCBI
Celera1852,421,817 - 52,455,101 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
FR900359  (ISO)
gemcitabine  (ISO)
hexadecanoic acid  (ISO)
hydrazine  (ISO)
ivermectin  (ISO)
menadione  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
pentachlorophenol  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thioacetamide  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
fibrillar center  (IEA,ISO)
nucleolus  (IBA,ISO)
nucleoplasm  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. TCOF1 gene encodes a putative nucleolar phosphoprotein that exhibits mutations in Treacher Collins Syndrome throughout its coding region. Wise CA, etal., Proc Natl Acad Sci U S A. 1997 Apr 1;94(7):3110-5.
Additional References at PubMed
PMID:15249688   PMID:22658674   PMID:22681889   PMID:23203802   PMID:26103128   PMID:26399832   PMID:31141469  


Genomics

Comparative Map Data
Tcof1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81856,537,437 - 56,570,727 (-)NCBIGRCr8
mRatBN7.21854,267,015 - 54,300,324 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1854,267,026 - 54,300,324 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1856,355,725 - 56,389,132 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01857,070,341 - 57,103,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01854,890,926 - 54,924,212 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01856,081,863 - 56,115,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,082,195 - 56,115,593 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,316,277 - 55,350,440 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,766,742 - 56,800,908 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11856,838,954 - 56,873,215 (-)NCBI
Celera1852,421,817 - 52,455,101 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
TCOF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385150,357,697 - 150,400,293 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5150,357,629 - 150,400,308 (+)EnsemblGRCh38hg38GRCh38
GRCh375149,737,260 - 149,779,856 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365149,717,428 - 149,760,064 (+)NCBINCBI36Build 36hg18NCBI36
Build 345149,717,427 - 149,744,386NCBI
Celera5145,818,601 - 145,860,948 (+)NCBICelera
Cytogenetic Map5q32-q33.1NCBI
HuRef5144,885,108 - 144,927,452 (+)NCBIHuRef
CHM1_15149,169,776 - 149,212,290 (+)NCBICHM1_1
T2T-CHM13v2.05150,894,238 - 150,936,834 (+)NCBIT2T-CHM13v2.0
Tcof1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391860,946,827 - 60,982,055 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1860,946,827 - 60,982,043 (-)EnsemblGRCm39 Ensembl
GRCm381860,813,738 - 60,848,983 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1860,813,755 - 60,848,971 (-)EnsemblGRCm38mm10GRCm38
MGSCv371860,974,196 - 61,008,562 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361860,939,911 - 60,974,277 (-)NCBIMGSCv36mm8
Celera1862,100,327 - 62,134,659 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1834.41NCBI
Tcof1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554154,140,262 - 4,174,762 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554154,138,495 - 4,174,735 (-)NCBIChiLan1.0ChiLan1.0
TCOF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24145,586,237 - 145,628,634 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15143,725,784 - 143,768,180 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05145,781,915 - 145,824,312 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15151,775,784 - 151,828,980 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5151,786,944 - 151,825,549 (+)Ensemblpanpan1.1panPan2
TCOF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1458,699,069 - 58,738,677 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl458,699,069 - 58,738,681 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha458,465,487 - 58,504,922 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0459,179,923 - 59,219,486 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl459,179,940 - 59,219,452 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,968,475 - 59,007,890 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0459,082,884 - 59,122,271 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0459,613,935 - 59,653,433 (-)NCBIUU_Cfam_GSD_1.0
Tcof1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213142,960,014 - 142,996,025 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365044,533,981 - 4,570,055 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365044,533,993 - 4,569,997 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCOF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2151,368,289 - 151,401,027 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12151,368,264 - 151,401,029 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22158,452,774 - 158,486,223 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCOF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12352,966,341 - 53,007,539 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2352,966,419 - 53,006,288 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603424,708,561 - 24,750,040 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcof1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247749,660,272 - 9,699,708 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tcof1
91 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:36
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000045041
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331730Scl27Serum cholesterol level QTL 273.826blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)185229287559796643Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
1331742Bp228Blood pressure QTL 2283.88752arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
1331736Bp227Blood pressure QTL 2272.791arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)184671876359796643Rat
1300125Rf26Renal function QTL 263.2urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)185253986365844950Rat
6893683Bw110Body weight QTL 1102.70.002body mass (VT:0001259)body weight (CMO:0000012)184334502283828827Rat
1331727Bp237Blood pressure QTL 2373.053arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940861698465Rat
9589041Epfw12Epididymal fat weight QTL 1217.080.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)184664067583828827Rat
8694432Bw165Body weight QTL 1653.810.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)184664067583828827Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331774Bp226Blood pressure QTL 2264.41065arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
61360EaeyExperimental allergic encephalomyelitis QTL y3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)184698893960377753Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2303120Mamtr8Mammary tumor resistance QTL 80.001mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)183135940883218561Rat
12880368Bw187Body weight QTL 1870.045body mass (VT:0001259)body weight (CMO:0000012)185253976376104388Rat
61367Iddm4Insulin dependent diabetes mellitus QTL 42.330.0074blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)183819245583192455Rat
2293658Bmd23Bone mineral density QTL 237.30.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)185146473363636873Rat
1359020Ppulsi2Prepulse inhibition QTL 22.71prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)185229287573997283Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1331752Bw27Body weight QTL 272.963body mass (VT:0001259)body weight (CMO:0000012)185229287565845095Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
12904069Cm123Cardiac mass QTL 1230.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)185253976376104388Rat
1331798Bp224Blood pressure QTL 2243.53873arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135940859796643Rat
12904070Cm124Cardiac mass QTL 1240.01heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)185253976376104388Rat
2303584Gluco55Glucose level QTL 552blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)184852004483828827Rat
12904071Am18Aortic mass QTL 180.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)185253976376104388Rat
61383Bp47Blood pressure QTL 4717.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)183127168160377755Rat
12904067Cm122Cardiac mass QTL 1220.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)185253976376104388Rat
1331806Bp229Blood pressure QTL 2294.36484arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876357867167Rat
2301417Bp319Blood pressure QTL 3190.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)185253976376104388Rat
12904073Kidm71Kidney mass QTL 710.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)185253976376104388Rat
1331780Bp238Blood pressure QTL 2383.269arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671876359796643Rat
738008Hcar14Hepatocarcinoma resistance QTL 144.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion number (CMO:0001462)185146473383218561Rat
1331776Bp225Blood pressure QTL 2252.829arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)183135940859796643Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
631518Bw11Body weight QTL 112.8body mass (VT:0001259)body weight (CMO:0000012)183587072380870723Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183135953059796478Rat
8694366Abfw8Abdominal fat weight QTL 86.380.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)184664067583828827Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)185253976369140759Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)184671893559796478Rat
631274Sprol1Serum protein level QTL 15.3blood total protein amount (VT:0005567)serum total protein level (CMO:0000661)183139332077209694Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
1600375Mcs22Mammary carcinoma susceptibility QTL 223.3mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)185253976363933058Rat
2303571Bw92Body weight QTL 923body mass (VT:0001259)body weight (CMO:0000012)184852004483828827Rat
1598826Anxrr20Anxiety related response QTL 203.04body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)184143297183828827Rat
61429Cia17Collagen induced arthritis QTL 174.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)183135940870263868Rat
7411719Strs5Sensitivity to stroke QTL 59.4cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)184999995865845095Rat

Markers in Region
RH138985  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map18521.2UniSTS
Cytogenetic Map18q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000045041   ⟹   ENSRNOP00000045755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,267,026 - 54,300,324 (-)Ensembl
Rnor_6.0 Ensembl1856,082,195 - 56,115,593 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096741   ⟹   ENSRNOP00000095414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,267,034 - 54,300,324 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115228   ⟹   ENSRNOP00000087788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,267,026 - 54,300,324 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117429   ⟹   ENSRNOP00000090342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1854,267,034 - 54,292,194 (-)Ensembl
RefSeq Acc Id: NM_001395127   ⟹   NP_001382056
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81856,537,437 - 56,570,727 (-)NCBI
mRatBN7.21854,267,034 - 54,300,324 (-)NCBI
Ensembl Acc Id: ENSRNOP00000045755   ⟸   ENSRNOT00000045041
Ensembl Acc Id: ENSRNOP00000090342   ⟸   ENSRNOT00000117429
Ensembl Acc Id: ENSRNOP00000087788   ⟸   ENSRNOT00000115228
Ensembl Acc Id: ENSRNOP00000095414   ⟸   ENSRNOT00000096741
RefSeq Acc Id: NP_001382056   ⟸   NM_001395127
- UniProtKB: A0A8I6AJL5 (UniProtKB/TrEMBL)
Protein Domains
Treacle protein

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A206-F1-model_v2 AlphaFold D4A206 1-1395 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700808
Promoter ID:EPDNEW_R11332
Type:initiation region
Name:Tcof1_1
Description:treacle ribosome biogenesis factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01856,115,613 - 56,115,673EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309850 AgrOrtholog
BioCyc Gene G2FUF-7355 BioCyc
Ensembl Genes ENSRNOG00000026108 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045041.6 UniProtKB/TrEMBL
  ENSRNOT00000096741.1 UniProtKB/TrEMBL
  ENSRNOT00000115228.1 UniProtKB/TrEMBL
  ENSRNOT00000117429.1 UniProtKB/TrEMBL
InterPro LisH_dimerisation UniProtKB/TrEMBL
  TCS_treacle UniProtKB/TrEMBL
  Treacle-like_TCS UniProtKB/TrEMBL
NCBI Gene 291571 ENTREZGENE
PANTHER PTHR20787 UniProtKB/TrEMBL
  TREACLE PROTEIN UniProtKB/TrEMBL
Pfam Treacle UniProtKB/TrEMBL
PhenoGen Tcof1 PhenoGen
PRINTS TREACLE UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026108 RatGTEx
SMART LisH UniProtKB/TrEMBL
UniProt A0A8I6A9F9_RAT UniProtKB/TrEMBL
  A0A8I6AAL0_RAT UniProtKB/TrEMBL
  A0A8I6AJL5 ENTREZGENE, UniProtKB/TrEMBL
  D4A206_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-24 Tcof1  treacle ribosome biogenesis factor 1  Tcof1  Treacher Collins-Franceschetti syndrome 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-09-29 Tcof1  Treacher Collins-Franceschetti syndrome 1  Tcof1  Treacher Collins-Franceschetti syndrome 1 homolog (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-12-16 Tcof1  Treacher Collins-Franceschetti syndrome 1 homolog (human)  Tcof1  Treacher Collins Franceschetti syndrome 1, homolog   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tcof1  Treacher Collins Franceschetti syndrome 1, homolog   Tcof1_predicted  Treacher Collins Franceschetti syndrome 1, homolog (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tcof1_predicted  Treacher Collins Franceschetti syndrome 1, homolog (predicted)      Symbol and Name status set to approved 70820 APPROVED