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Gene: Cdx1 (caudal type homeo box 1) Rattus norvegicus
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Symbol: Cdx1
Name: caudal type homeo box 1
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II distal enhancer sequence-specific DNA binding activity; and methyl-CpG binding activity. Predicted to be involved in several processes, including bone morphogenesis; positive regulation of transcription by RNA polymerase II; and regulation of somitogenesis. Predicted to localize to the nucleus. Orthologous to human CDX1 (caudal type homeobox 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; all-trans-retinoic acid; ammonium chloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: caudal type homeobox transcription factor 1; caudal-type homeobox protein 1; homeobox protein CDX-1; LOC364883
Orthologs:
Homo sapiens (human) : CDX1 (caudal type homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Cdx1 (caudal type homeobox 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cdx1 (caudal type homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CDX1 (caudal type homeobox 1)
Canis lupus familiaris (dog) : CDX1 (caudal type homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cdx1 (caudal type homeobox 1)
Sus scrofa (pig) : CDX1 (caudal type homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01856,337,485 - 56,355,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01855,569,988 - 55,587,763 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,983,284 - 57,006,721 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11857,055,476 - 57,056,627 (-)NCBI
Celera1852,626,253 - 52,645,366 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Cdx1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621233
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.