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Gene: Cdx1 (caudal type homeo box 1) Rattus norvegicus
Symbol: Cdx1
Name: caudal type homeo box 1
RGD ID: 621233
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and methyl-CpG binding activity. Predicted to be involved in several processes, including bone morphogenesis; positive regulation of transcription by RNA polymerase II; and regulation of somitogenesis. Predicted to localize to nucleus. Orthologous to human CDX1 (caudal type homeobox 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; all-trans-retinoic acid; ammonium chloride.
Type: protein-coding
RefSeq Status: MODEL
Also known as: caudal type homeobox transcription factor 1; caudal-type homeobox protein 1; homeobox protein CDX-1; LOC364883
Homo sapiens (human) : CDX1 (caudal type homeobox 1)  HGNC  Alliance
Mus musculus (house mouse) : Cdx1 (caudal type homeobox 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cdx1 (caudal type homeobox 1)
Pan paniscus (bonobo/pygmy chimpanzee) : CDX1 (caudal type homeobox 1)
Canis lupus familiaris (dog) : CDX1 (caudal type homeobox 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cdx1 (caudal type homeobox 1)
Sus scrofa (pig) : CDX1 (caudal type homeobox 1)
Chlorocebus sabaeus (African green monkey) : CDX1 (caudal type homeobox 1)
Heterocephalus glaber (naked mole-rat) : Cdx1 (caudal type homeobox 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Rat AssemblyChrPosition (strand)SourceGenome Browsers
Rnor_6.01856,337,485 - 56,355,477 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1856,338,336 - 56,355,490 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01855,569,988 - 55,587,763 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41856,983,284 - 57,006,721 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11857,055,476 - 57,056,627 (-)NCBI
Celera1852,626,253 - 52,645,366 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated


Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status


RNA-SEQ Expression


Nucleotide Sequences
Protein Sequences

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
More on Cdx1
Alliance Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621233
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE


RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.