in utero embryonic development - Ontology Report

MGI:1931734|MGI:2447280|MGI:2651395|MGI:3696672 (PMID:14729481), (PMID:15037318), (PMID:17117439)

PMID:14729481 PMID:15037318 PMID:17117439

NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241

Acvr1b

activin A receptor type 1B

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857710 (PMID:15485907), (PMID:16564040)

PMID:15485907 PMID:16564040

GO_REF:0000107

NCBI chr 7:132,286,266...132,329,679
Ensembl chr 7:132,286,275...132,329,673

Acvr1c

activin A receptor type 1C

NOT|acts_upstream_of_or_within

MGI:3512292 (PMID:15485907)

PMID:15485907

NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327

Acvrl1

activin A receptor like type 1

acts_upstream_of_or_within

MGI:2680088 (PMID:17911384)

PMID:17911384

NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591

Ada

adenosine deaminase

acts_upstream_of_or_within

MGI:1857117 (PMID:7731963), (PMID:9272950)

PMID:7731963 PMID:9272950

NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088

Adam10

ADAM metallopeptidase domain 10

involved_in

ISS
IEA
ISO

GO_REF:0000024
GO_REF:0000107
(MGI:3522331|PMID:12354787)

UniProt
Ensembl
RGD

PMID:12354787

GO_REF:0000024 GO_REF:0000107 MGI:3522331

NCBI chr 8:71,346,008...71,477,889
Ensembl chr 8:71,345,837...71,477,889

Adamts3

ADAM metallopeptidase with thrombospondin type 1, motif 3

acts_upstream_of_or_within

MGI:5585728 (PMID:27996060)

NCBI chr14:18,231,128...18,437,771
Ensembl chr14:18,231,165...18,435,556

Adcy9

adenylate cyclase 9

acts_upstream_of_or_within

MGI:5636912 (PMID:27996060)

NCBI chr10:11,138,966...11,262,067
Ensembl chr10:11,139,446...11,262,066

Add1

adducin 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3799499 (PMID:18723693)

PMID:18723693

GO_REF:0000107

NCBI chr14:76,108,643...76,167,267
Ensembl chr14:76,108,654...76,167,182

Alkbh1

alkB homolog 1, histone H2A dioxygenase

acts_upstream_of_or_within

MGI:3774031 (PMID:18163532)

PMID:18163532

NCBI chr 6:107,068,301...107,088,784
Ensembl chr 6:107,068,475...107,088,759

Als2

alsin Rho guanine nucleotide exchange factor ALS2

RGD

PMID:16049005

RGD:1599081

NCBI chr 9:60,613,182...60,686,394
Ensembl chr 9:60,613,167...60,670,737

Amot

angiomotin

acts_upstream_of_or_within

MGI:2656627 (PMID:12676095)

PMID:12676095

NCBI chr X:108,982,399...109,041,265
Ensembl chr X:108,984,022...109,041,272

Angpt1

angiopoietin 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2180145|MGI:99906 (PMID:11172728)

PMID:11172728

GO_REF:0000107

NCBI chr 7:73,528,345...73,783,953
Ensembl chr 7:73,531,486...73,784,067

Ankrd11

ankyrin repeat domain containing 11

acts_upstream_of_or_within

MGI:3797584 (PMID:17986521)

PMID:17986521

NCBI chr19:50,940,284...51,098,962
Ensembl chr19:50,940,299...51,098,962

Anks6

ankyrin repeat and sterile alpha motif domain containing 6

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5637085 (PMID:27996060)

GO_REF:0000107

NCBI chr 5:61,309,183...61,350,596
Ensembl chr 5:61,309,183...61,350,596

Apba1

amyloid beta precursor protein binding family A member 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1261791|MGI:1888527 (PMID:17167098)

PMID:17167098

GO_REF:0000107

NCBI chr 1:221,363,769...221,569,496
Ensembl chr 1:221,363,778...221,566,553

Apba2

amyloid beta precursor protein binding family A member 2

acts_upstream_of_or_within

MGI:1860297 (PMID:17167098)

PMID:17167098

NCBI chr 1:118,053,270...118,286,858
Ensembl chr 1:118,103,219...118,285,699

Apba3

amyloid beta precursor protein binding family A member 3

acts_upstream_of_or_within

MGI:1860297 (PMID:17167098)

PMID:17167098

NCBI chr 7:8,446,212...8,451,310
Ensembl chr 7:8,446,216...8,451,241

Apob

apolipoprotein B

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857625|MGI:2157775 (PMID:7878058), (PMID:9502790)

PMID:7878058 PMID:9502790

GO_REF:0000107

NCBI chr 6:30,844,386...30,883,983
Ensembl chr 6:30,844,368...30,892,497

androgen receptor

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1856319 (PMID:10319319)

PMID:10319319

GO_REF:0000107

NCBI chr X:63,104,771...63,273,934
Ensembl chr X:63,104,771...63,273,925

Armc5

armadillo repeat containing 5

acts_upstream_of_or_within

MGI:6098706 (PMID:28169274)

PMID:28169274

NCBI chr 1:182,820,141...182,826,913
Ensembl chr 1:182,820,141...182,826,907

Arnt2

aryl hydrocarbon receptor nuclear translocator 2

involved_in

(MGI:2448795|PMID:12502753)

PMID:12502753

MGI:2448795

NCBI chr 1:138,236,235...138,392,868
Ensembl chr 1:138,189,940...138,393,153

Ascl2

achaete-scute family bHLH transcription factor 2

acts_upstream_of_or_within

MGI:2153832 (PMID:8090202)

PMID:8090202

NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406

Atf2

activating transcription factor 2

involved_in

GO_REF:0000107
MGI:2443472|MGI:3720850 (PMID:17699753)

PMID:17699753

GO_REF:0000107

NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236

Atf7

activating transcription factor 7

involved_in

MGI:109349 (PMID:17699753)

PMID:17699753

NCBI chr 7:133,660,491...133,750,902
Ensembl chr 7:133,663,294...133,750,848

Atp11a

ATPase phospholipid transporting 11A

acts_upstream_of_or_within

MGI:4363953 (PMID:27996060)

NCBI chr16:76,657,752...76,767,640
Ensembl chr16:76,657,752...76,767,640

Atp7a

ATPase copper transporting alpha

RGD

PMID:10864443

RGD:1599395

NCBI chr X:71,094,144...71,201,550
Ensembl chr X:71,094,202...71,198,354

Axin1

axin 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3840236|MGI:3840238|MGI:88276 (PMID:19204372)

PMID:19204372

GO_REF:0000107

NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615

B9d1

B9 domain containing 1

acts_upstream_of_or_within

MGI:5301332 (PMID:22179047)

PMID:22179047

NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008

Bap1

Brca1 associated protein 1

involved_in

GO_REF:0000107
MGI:5439653 (PMID:22878500)

PMID:22878500

GO_REF:0000107

NCBI chr16:6,446,709...6,455,535
Ensembl chr16:6,446,709...6,455,535

Bcl2l1

Bcl2-like 1

acts_upstream_of_or_within

MGI:2158303 (PMID:10618441)

PMID:10618441

NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479

Bcl2l11

Bcl2-like 11

acts_upstream_of_or_within

MGI:97603 (PMID:16282979)

PMID:16282979

NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068

Bmi1

BMI1 proto-oncogene, polycomb ring finger

acts_upstream_of_or_within

MGI:99161 (PMID:11290297)

PMID:11290297

NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690

Bmp2

bone morphogenetic protein 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3583785 (PMID:16314491)

PMID:16314491

GO_REF:0000107

NCBI chr 3:120,812,660...120,822,579
Ensembl chr 3:120,812,882...120,821,397

Bmpr1a

bone morphogenetic protein receptor type 1A

acts_upstream_of_or_within

MGI:2158342|MGI:2158390 (PMID:17359964)

PMID:17359964

NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616

Brk1

BRICK1 subunit of SCAR/WAVE actin nucleating complex

acts_upstream_of_or_within

MGI:3872157 (PMID:20861187)

PMID:20861187

NCBI chr 4:146,750,821...146,766,050
Ensembl chr 4:146,750,821...146,768,856

Btf3

basic transcription factor 3

acts_upstream_of_or_within

MGI:3688730 (PMID:7655515)

PMID:7655515

NCBI chr 2:29,659,764...29,666,898
Ensembl chr 2:29,659,231...29,666,879

Bysl

bystin-like

acts_upstream_of_or_within

MGI:3697441 (PMID:17055491)

PMID:17055491

NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339

C19h19orf67

similar to human chromosome 19 open reading frame 67

acts_upstream_of_or_within

MGI:5289829 (PMID:27996060)

NCBI chr19:24,146,815...24,150,983
Ensembl chr19:24,146,815...24,150,095

C2cd3

C2 domain containing 3 centriole elongation regulator

acts_upstream_of_or_within

(PMID:19004860)

PMID:19004860

NCBI chr 1:154,715,151...154,812,955
Ensembl chr 1:154,715,310...154,812,520

complement C5

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:88513 (PMID:18947875)

PMID:18947875

GO_REF:0000107

NCBI chr 3:18,270,696...18,361,994
Ensembl chr 3:18,270,696...18,361,994

complement C6

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:88513 (PMID:18947875)

PMID:18947875

GO_REF:0000107

NCBI chr 2:53,846,028...53,921,279
Ensembl chr 2:53,851,985...53,921,275

Camsap3

calmodulin regulated spectrin-associated protein family, member 3

acts_upstream_of_or_within

MGI:4431915 (PMID:27996060)

NCBI chr12:1,643,062...1,666,685
Ensembl chr12:1,643,251...1,666,685

Ccm2

CCM2 scaffold protein

acts_upstream_of_or_within

MGI:1924696|MGI:3512761 (PMID:19151727)

PMID:19151727

NCBI chr14:81,418,418...81,464,114
Ensembl chr14:81,418,236...81,464,116

Ccnb1

cyclin B1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2429976 (PMID:9539739)

PMID:9539739

GO_REF:0000107

NCBI chr 2:31,912,190...31,921,163
Ensembl chr 2:31,912,193...31,921,172

Ccnb2

cyclin B2

acts_upstream_of_or_within

MGI:2429974 (PMID:9539739)

PMID:9539739

NCBI chr 8:71,087,594...71,100,794
Ensembl chr 8:71,087,595...71,100,874

Ccnk

cyclin K

acts_upstream_of_or_within

MGI:4348808 (PMID:22012619)

PMID:22012619

NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191

Cdh1

cadherin 1

acts_upstream_of_or_within

MGI:2389020 (PMID:15775979)

PMID:15775979

NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775

Cdk2ap1

cyclin-dependent kinase 2 associated protein 1

acts_upstream_of_or_within

MGI:3512185 (PMID:19229340)

PMID:19229340

NCBI chr12:32,249,752...32,258,483
Ensembl chr12:32,249,747...32,258,479

Cdkn1a

cyclin-dependent kinase inhibitor 1A

acts_upstream_of_or_within

MGI:1924285 (PMID:26334721)

PMID:26334721

NCBI chr20:7,149,177...7,159,727
Ensembl chr20:7,149,217...7,159,585

Celf4

CUGBP, Elav-like family member 4

acts_upstream_of_or_within

MGI:4433345 (PMID:27996060)

NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786

Cert1

ceramide transporter 1

acts_upstream_of_or_within

MGI:3837565|MGI:5287775 (PMID:19139267), (PMID:27996060)

PMID:19139267 PMID:27996060

NCBI chr 2:27,882,546...27,987,090
Ensembl chr 2:27,882,555...27,987,074

Chd7

chromodomain helicase DNA binding protein 7

involved_in
acts_upstream_of_or_within

(PMID:15300250)
MGI:3588650 (PMID:16207732)

PMID:15300250 PMID:16207732

NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358

Chd8

chromodomain helicase DNA binding protein 8

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3530648 (PMID:15367660)

PMID:15367660

GO_REF:0000107

NCBI chr15:24,905,789...24,965,461
Ensembl chr15:24,905,789...24,951,285

Chrd

chordin

involved_in

MGI:2157350 (PMID:12810603)

PMID:12810603

NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673

Chst11

carbohydrate sulfotransferase 11

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4363643 (PMID:27996060)

GO_REF:0000107

NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:20,528,100...20,743,111

Chtop

chromatin target of PRMT1

acts_upstream_of_or_within

MGI:4842477 (PMID:27996060)

NCBI chr 2:175,981,266...175,992,820
Ensembl chr 2:175,981,271...175,992,748

Cir1

corepressor interacting with RBPJ, 1

acts_upstream_of_or_within

MGI:5577261 (PMID:27996060)

NCBI chr 3:58,158,923...58,188,799
Ensembl chr 3:58,158,951...58,188,789

Cited2

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2

acts_upstream_of_or_within

MGI:2176158 (PMID:16579983)

PMID:16579983

NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897

Cmip

c-Maf-inducing protein

acts_upstream_of_or_within

MGI:5286409 (PMID:27996060)

NCBI chr19:45,304,597...45,510,653
Ensembl chr19:45,304,031...45,508,709

Cntnap2

contactin associated protein 2

involved_in

MGI:2677631 (PMID:32879327)

PMID:32879327

NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027

Col3a1

collagen type III alpha 1 chain

involved_in

MGI:1857431|MGI:1860700 (PMID:25330296)

PMID:25330296

NCBI chr 9:47,374,611...47,410,547
Ensembl chr 9:47,374,593...47,410,547

Cops3

COP9 signalosome subunit 3

acts_upstream_of_or_within

MGI:2678261 (PMID:12972600)

PMID:12972600

NCBI chr10:44,618,115...44,652,807
Ensembl chr10:44,618,115...44,641,597

Coq7

coenzyme Q7, hydroxylase

acts_upstream_of_or_within

MGI:2157003|MGI:2158322 (PMID:11585841), (PMID:11716496)

PMID:11585841 PMID:11716496

NCBI chr 1:172,836,359...172,851,173
Ensembl chr 1:172,835,188...172,851,158

Cpt2

carnitine palmitoyltransferase 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5636913 (PMID:27996060)

GO_REF:0000107

NCBI chr 5:122,664,677...122,682,126
Ensembl chr 5:122,664,677...122,682,095

Cr1l

complement C3b/C4b receptor 1 like

acts_upstream_of_or_within

MGI:88233 (PMID:18947875)

PMID:18947875

NCBI chr13:106,606,952...106,660,442
Ensembl chr13:106,574,858...106,660,445

Cripto

cripto, EGF-CFC family member

acts_upstream_of_or_within

MGI:1857518 (PMID:9876177)

PMID:9876177

NCBI chr 8:110,924,774...110,938,545
Ensembl chr 8:110,925,024...110,930,308

Ctcf

CCCTC-binding factor

acts_upstream_of_or_within

(PMID:28846746)

PMID:28846746

NCBI chr19:33,521,726...33,571,124
Ensembl chr19:33,529,319...33,571,123

Ctnnb1

catenin beta 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1096327|MGI:2148567 (PMID:18231602), (PMID:19204372)

PMID:18231602 PMID:19204372

GO_REF:0000107

NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111

cubilin

RGD

NCBI chr17:76,385,046...76,593,133
Ensembl chr17:76,385,060...76,593,231

Cul3

cullin 3

acts_upstream_of_or_within

MGI:2651546 (PMID:10500095)

PMID:10500095

NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462

Cul4a

cullin 4A

involved_in

(MGI:2183132|PMID:12077329)

PMID:12077329

MGI:2183132

NCBI chr16:76,385,298...76,422,316
Ensembl chr16:76,384,546...76,422,330

Dab2

DAB adaptor protein 2

acts_upstream_of_or_within

MGI:2429678 (PMID:12413896)

PMID:12413896

NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476

Dbn1

drebrin 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5501061 (PMID:27996060)

GO_REF:0000107

NCBI chr17:9,150,608...9,164,982
Ensembl chr17:9,150,659...9,164,984

Dhx35

DEAH-box helicase 35

acts_upstream_of_or_within

MGI:5637055 (PMID:27996060)

NCBI chr 3:147,450,178...147,507,473
Ensembl chr 3:147,450,163...147,507,451

Diaph3

diaphanous-related formin 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5574347 (PMID:24239357)

PMID:24239357

GO_REF:0000107

NCBI chr15:62,543,375...63,013,060
Ensembl chr15:62,543,375...63,012,975

Dnaaf2

dynein, axonemal, assembly factor 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5532530 (PMID:31107948)

PMID:31107948

GO_REF:0000107

NCBI chr 6:87,661,101...87,670,267
Ensembl chr 6:87,660,821...87,670,199

Dsc3

desmocollin 3

acts_upstream_of_or_within

MGI:3615340 (PMID:16418220)

PMID:16418220

NCBI chr18:11,379,759...11,413,797
Ensembl chr18:11,377,347...11,413,797

Dusp3

dual specificity phosphatase 3

IDA

RGD

PMID:18035061

RGD:2317890

NCBI chr10:86,920,014...86,933,739
Ensembl chr10:86,920,014...86,933,962

Edn1

endothelin 1

acts_upstream_of_or_within

MGI:1857637 (PMID:15327783)

PMID:15327783

NCBI chr17:22,454,924...22,460,812
Ensembl chr17:22,454,420...22,460,885

Ednra

endothelin receptor type A

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:15327783)

PMID:15327783

GO_REF:0000107

NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049

Egfl8

EGF-like-domain, multiple 8

NOT|involved_in

GO_REF:0000024
(MGI:3042772|PMID:15162510)

PMID:15162510

GO_REF:0000024 MGI:3042772

NCBI chr20:4,132,930...4,136,024
Ensembl chr20:4,133,629...4,136,018

Eif2s2

eukaryotic translation initiation factor 2 subunit beta

acts_upstream_of_or_within

MGI:3838881 (PMID:19168544)

PMID:19168544

NCBI chr 3:143,374,652...143,395,460
Ensembl chr 3:143,373,686...143,395,432

Eif4e2

eukaryotic translation initiation factor 4E family member 2

acts_upstream_of_or_within

MGI:5444035 (PMID:22751931)

PMID:22751931

NCBI chr 9:87,886,126...87,914,470
Ensembl chr 9:87,878,085...87,914,482

Ell

elongation factor for RNA polymerase II

acts_upstream_of_or_within

MGI:1933265 (PMID:11118326)

PMID:11118326

NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118

Emx1

empty spiracles homeobox 1

acts_upstream_of_or_within

MGI:894681 (PMID:23861879)

PMID:23861879

NCBI chr 4:117,725,148...117,741,616
Ensembl chr 4:117,725,155...117,741,613

Endog

endonuclease G

acts_upstream_of_or_within

MGI:3034030|MGI:3514265 (PMID:14663139)

PMID:14663139

NCBI chr 3:13,449,113...13,451,715
Ensembl chr 3:13,449,086...13,451,932

Eno1

enolase 1

acts_upstream_of_or_within

MGI:3050549 (PMID:9626503)

PMID:9626503

NCBI chr 5:160,719,951...160,731,337
Ensembl chr 5:160,719,951...160,731,336

Epb41l5

erythrocyte membrane protein band 4.1 like 5

acts_upstream_of_or_within

MGI:3822451 (PMID:18794329)

PMID:18794329

NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360

Epn1

Epsin 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1333766 (PMID:19666558)

PMID:19666558

GO_REF:0000107

NCBI chr 1:68,742,491...68,760,570
Ensembl chr 1:68,742,789...68,758,874

Epn2

epsin 2

acts_upstream_of_or_within

MGI:1333763 (PMID:19666558)

PMID:19666558

NCBI chr10:46,197,785...46,259,673
Ensembl chr10:46,197,785...46,259,642

Ercc2

ERCC excision repair 2, TFIIH core complex helicase subunit

acts_upstream_of_or_within

MGI:3693615|MGI:3696121 (PMID:17020410)

PMID:17020410

NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102

Erf

Ets2 repressor factor

acts_upstream_of_or_within

MGI:3719472 (PMID:17502352)

PMID:17502352

NCBI chr 1:80,829,935...80,838,388
Ensembl chr 1:80,829,935...80,838,388

estrogen-related receptor beta

acts_upstream_of_or_within

MGI:1857422 (PMID:9285590)

NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791

Etnk2

ethanolamine kinase 2

acts_upstream_of_or_within

MGI:3526407 (PMID:16861741)

PMID:16861741

NCBI chr13:44,811,012...44,829,052
Ensembl chr13:44,811,015...44,829,037

Etv2

ETS variant transcription factor 2

acts_upstream_of_or_within

MGI:4415819 (PMID:18462699)

PMID:18462699

NCBI chr 1:85,890,562...85,894,025
Ensembl chr 1:85,890,559...85,893,431

Exoc3l2

exocyst complex component 3-like 2

acts_upstream_of_or_within

MGI:5548646 (PMID:27996060)

NCBI chr 1:79,113,784...79,145,359
Ensembl chr 1:79,112,506...79,145,465

Fendrr

FOXF1 adjacent non-coding developmental regulatory RNA

involved_in

MGI:5563522 (PMID:25909911)

PMID:25909911

NCBI chr19:49,127,225...49,152,780
Ensembl chr19:49,121,214...49,153,240

Fgfr1

Fibroblast growth factor receptor 1

acts_upstream_of_or_within

MGI:95523 (PMID:17687036)

PMID:17687036

NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350

Fgfr2

fibroblast growth factor receptor 2

acts_upstream_of_or_within

MGI:2153790|MGI:95522 (PMID:17687036), (PMID:9435295)

PMID:9435295 PMID:17687036

NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626

Fkbp10

FKBP prolyl isomerase 10

acts_upstream_of_or_within

MGI:5432211 (PMID:24777781)

PMID:24777781

NCBI chr10:85,345,434...85,357,998
Ensembl chr10:85,346,126...85,427,330

Fkrp

fukutin related protein

acts_upstream_of_or_within

MGI:4835411 (PMID:23591631), (PMID:28039900)

PMID:23591631 PMID:28039900

NCBI chr 1:77,479,641...77,486,954
Ensembl chr 1:77,476,084...77,486,992

Flcn

folliculin

involved_in
acts_upstream_of_or_within

GO_REF:0000024
MGI:4348628 (PMID:21258407)

PMID:21258407

GO_REF:0000024

NCBI chr10:44,588,621...44,607,808
Ensembl chr10:44,588,624...44,607,769

Flvcr1

FLVCR choline and heme transporter 1

acts_upstream_of_or_within

MGI:3776021 (PMID:18258918)

PMID:18258918

NCBI chr13:102,586,263...102,608,647
Ensembl chr13:102,586,257...102,608,661

Flvcr2

FLVCR choline and putative heme transporter 2

acts_upstream_of_or_within

(PMID:32369453)

PMID:32369453

NCBI chr 6:105,408,355...105,472,355
Ensembl chr 6:105,408,339...105,472,353

Fosl1

FOS like 1, AP-1 transcription factor subunit

acts_upstream_of_or_within

MGI:2385824 (PMID:11044407)

PMID:11044407

NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930

Foxa2

forkhead box A2

acts_upstream_of_or_within

(PMID:9152011)

PMID:9152011

NCBI chr 3:135,470,123...135,474,326
Ensembl chr 3:135,470,131...135,474,326

Foxc1

forkhead box C1

acts_upstream_of_or_within

MGI:1856705 (PMID:4819561)

PMID:4819561

NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803

Foxd3

forkhead box D3

involved_in

GO_REF:0000024
(MGI:2388404|PMID:12381664)

PMID:12381664

GO_REF:0000024 MGI:2388404

NCBI chr 5:114,335,084...114,337,450
Ensembl chr 5:114,335,408...114,336,817

Foxf1

forkhead box F1

involved_in
acts_upstream_of_or_within

(PMID:19500772)
MGI:1929432 (PMID:11124112), (PMID:11493558)

PMID:11124112 PMID:11493558 PMID:19500772

NCBI chr19:49,153,949...49,157,741
Ensembl chr19:49,153,699...49,157,738

Gabpa

GA binding protein transcription factor subunit alpha

acts_upstream_of_or_within

MGI:3665313 (PMID:17485447)

PMID:17485447

NCBI chr11:23,888,586...23,917,612
Ensembl chr11:23,888,815...23,917,605

Gata1

GATA binding protein 1

acts_upstream_of_or_within

MGI:2429992 (PMID:9576834)

PMID:9576834

NCBI chr X:14,529,706...14,537,530
Ensembl chr X:14,529,702...14,537,530

Gata3

GATA binding protein 3

acts_upstream_of_or_within

MGI:3696958 (PMID:20702712)

PMID:20702712

NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391

Gata4

GATA binding protein 4

acts_upstream_of_or_within

MGI:2179443|MGI:2386265|MGI:3033220|MGI:3793424 (PMID:15310850), (PMID:20123909), (PMID:9136932), (PMID:9136933)

PMID:9136932 PMID:9136933 PMID:15310850 PMID:20123909

NCBI chr15:37,459,601...37,531,291
Ensembl chr15:37,459,601...37,505,636

Gata6

GATA binding protein 6

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2177785|MGI:3793425 (PMID:20123909), (PMID:9832509)

PMID:9832509 PMID:20123909

GO_REF:0000107

NCBI chr18:2,188,121...2,219,532
Ensembl chr18:2,188,121...2,219,532

Gatad2a

GATA zinc finger domain containing 2A

acts_upstream_of_or_within

(PMID:17565372)

PMID:17565372

NCBI chr16:19,429,578...19,520,320
Ensembl chr16:19,429,578...19,519,587

Gdf1

growth differentiation factor 1

acts_upstream_of_or_within

MGI:2181719 (PMID:17936261)

PMID:17936261

NCBI chr16:19,097,309...19,112,519
Ensembl chr16:19,097,314...19,112,519

Gdf3

growth differentiation factor 3

acts_upstream_of_or_within

MGI:3612535|MGI:3764814|MGI:95683 (PMID:16368929), (PMID:17936261)

PMID:16368929 PMID:17936261

NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937

Gja1

gap junction protein, alpha 1

acts_upstream_of_or_within

MGI:1857177 (PMID:9486664)

PMID:9486664

NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582

Gjb3

gap junction protein, beta 3

RGD

PMID:9291584

RGD:1599752

NCBI chr 5:139,649,227...139,654,970
Ensembl chr 5:139,649,195...139,654,980

Gli2

GLI family zinc finger 2

acts_upstream_of_or_within

MGI:3834146 (PMID:19056373)

PMID:19056373

NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574

Gli3

GLI family zinc finger 3

acts_upstream_of_or_within

MGI:1856276 (PMID:16254602)

PMID:16254602

NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712

Gna12

G protein subunit alpha 12

acts_upstream_of_or_within

MGI:95768 (PMID:12077299)

PMID:12077299

NCBI chr12:13,805,580...13,886,255
Ensembl chr12:13,805,698...13,886,255

Gna13

G protein subunit alpha 13

acts_upstream_of_or_within

MGI:95767 (PMID:12077299)

PMID:12077299

NCBI chr10:94,337,939...94,370,774
Ensembl chr10:94,337,725...94,370,774

Gpi

glucose-6-phosphate isomerase

acts_upstream_of_or_within

MGI:1932543 (PMID:1582174)

PMID:1582174

NCBI chr 1:86,828,211...86,856,077
Ensembl chr 1:86,828,216...86,856,086

Grhl2

grainyhead-like transcription factor 2

acts_upstream_of_or_within

MGI:4331210 (PMID:21262862)

PMID:21262862

NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258

Grin2b

glutamate ionotropic receptor NMDA type subunit 2B

acts_upstream_of_or_within

MGI:1928295 (PMID:9147327)

PMID:9147327

NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279

H19

H19 imprinted maternally expressed transcript

IMP

RGD

PMID:18778817

RGD:5509951

NCBI chr 1:197,730,698...197,733,374
Ensembl chr 1:197,730,698...197,733,134

heart and neural crest derivatives expressed 1

acts_upstream_of_or_within

MGI:2153823 (PMID:9500551)

PMID:9500551

NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213

Hand2

heart and neural crest derivatives expressed 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857639 (PMID:9171826)

PMID:9171826

GO_REF:0000107

NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891

Hba-a1

hemoglobin alpha, adult chain 1

acts_upstream_of_or_within

MGI:96016 (PMID:7550311)

PMID:7550311

NCBI chr10:15,337,265...15,338,121
Ensembl chr10:15,307,815...15,338,392

Hba-a2

hemoglobin alpha, adult chain 2

acts_upstream_of_or_within

MGI:96015 (PMID:7550311)

PMID:7550311

NCBI chr10:15,323,830...15,324,677
Ensembl chr10:15,307,815...15,338,392

Hcn4

hyperpolarization activated cyclic nucleotide-gated potassium channel 4

acts_upstream_of_or_within

MGI:2684538 (PMID:14657344)

PMID:14657344

NCBI chr 8:59,222,206...59,259,626
Ensembl chr 8:59,221,653...59,259,639

Hdac3

histone deacetylase 3

involved_in

MGI:4889069 (PMID:32467224)

PMID:32467224

NCBI chr18:29,770,637...29,789,850
Ensembl chr18:29,770,636...29,793,856

Heg1

heart development protein with EGF-like domains 1

acts_upstream_of_or_within

MGI:2384924|MGI:3838392 (PMID:19151727)

PMID:19151727

NCBI chr11:67,006,954...67,095,020
Ensembl chr11:66,957,190...67,095,051

Hes1

hes family bHLH transcription factor 1

acts_upstream_of_or_within

MGI:104877 (PMID:11500373)

PMID:11500373

NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192

Hes3

hes family bHLH transcription factor 3

acts_upstream_of_or_within

MGI:104853 (PMID:11500373)

PMID:11500373

NCBI chr 5:162,793,611...162,799,578
Ensembl chr 5:162,794,367...162,796,261

Hhex

hematopoietically expressed homeobox

acts_upstream_of_or_within

MGI:4999724 (PMID:21445260)

PMID:21445260

NCBI chr 1:235,190,455...235,196,042
Ensembl chr 1:235,190,455...235,196,042

Hinfp

histone H4 transcription factor

involved_in

(MGI:3851835|PMID:19590016)

PMID:19590016

MGI:3851835

NCBI chr 8:44,634,333...44,644,288
Ensembl chr 8:44,634,333...44,641,000

Hm13

histocompatibility minor 13

acts_upstream_of_or_within

MGI:5637209 (PMID:27996060)

NCBI chr 3:141,145,792...141,183,557
Ensembl chr 3:141,145,782...141,184,703

Hsd17b2

hydroxysteroid (17-beta) dehydrogenase 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3773836 (PMID:18048640)

PMID:18048640

GO_REF:0000107

NCBI chr19:45,753,576...45,825,203
Ensembl chr19:45,753,574...45,825,202

Hsf1

heat shock transcription factor 1

acts_upstream_of_or_within

MGI:2155444 (PMID:10545106)

PMID:10545106

NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011

Icmt

isoprenylcysteine carboxyl methyltransferase

acts_upstream_of_or_within

MGI:2183607|MGI:2680650 (PMID:11121396), (PMID:12105862)

PMID:11121396 PMID:12105862

NCBI chr 5:162,804,368...162,811,129
Ensembl chr 5:162,804,368...162,811,128

Ifitm5

interferon induced transmembrane protein 5

involved_in

(MGI:5607401|PMID:20838829)

PMID:20838829

MGI:5607401

NCBI chr 1:196,045,836...196,052,554
Ensembl chr 1:196,045,666...196,047,232

insulin-like growth factor 2

involved_in

(MGI:5908476|PMID:28522536)

PMID:28522536

NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018

Ihh

Indian hedgehog signaling molecule

acts_upstream_of_or_within

(PMID:17881493)

PMID:17881493

NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532

Inpp5b

inositol polyphosphate-5-phosphatase B

acts_upstream_of_or_within

MGI:109589 (PMID:20195868)

PMID:20195868

NCBI chr 5:136,996,766...137,061,315
Ensembl chr 5:136,996,686...137,061,315

Inpp5k

inositol polyphosphate-5-phosphatase K

acts_upstream_of_or_within

MGI:3810936 (PMID:18573875)

PMID:18573875

NCBI chr10:60,474,262...60,495,813
Ensembl chr10:60,475,897...60,496,773

Insl3

insulin-like 3

acts_upstream_of_or_within

MGI:2661997 (PMID:10319319)

PMID:10319319

NCBI chr16:18,398,682...18,400,566
Ensembl chr16:18,384,829...18,400,560

Itgb1

integrin subunit beta 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2154539 (PMID:7544313)

PMID:7544313

GO_REF:0000107

NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195

Jag2

jagged canonical Notch ligand 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2657215 (PMID:9531541)

PMID:9531541

GO_REF:0000107

NCBI chr 6:131,983,059...132,005,665
Ensembl chr 6:131,983,056...132,005,818

Junb

JunB proto-oncogene, AP-1 transcription factor subunit

acts_upstream_of_or_within

MGI:2153821 (PMID:10022836)

PMID:10022836

NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035

Kat2a

lysine acetyltransferase 2A

acts_upstream_of_or_within

MGI:2386279|MGI:3711317 (PMID:17325035)

PMID:17325035

NCBI chr10:85,632,216...85,640,561
Ensembl chr10:85,632,216...85,640,166

Kdm2a

lysine demethylase 2A

acts_upstream_of_or_within

(PMID:25463925)

PMID:25463925

NCBI chr 1:201,612,427...201,682,359
Ensembl chr 1:201,612,453...201,680,787

Kdm6a

lysine demethylase 6A

acts_upstream_of_or_within

MGI:4126347|MGI:5448825|MGI:5516011 (PMID:22949634), (PMID:23028370)

PMID:22949634 PMID:23028370

NCBI chr X:4,337,466...4,477,100
Ensembl chr X:4,337,750...4,477,062

Kdm8

lysine demethylase 8

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:104556|MGI:98834 (PMID:26334721)

PMID:26334721

GO_REF:0000107

NCBI chr 1:180,013,969...180,028,829
Ensembl chr 1:180,020,656...180,028,841

Keap1

Kelch-like ECH-associated protein 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2681416 (PMID:15087497)

PMID:15087497

GO_REF:0000107

NCBI chr 8:19,768,375...19,777,862
Ensembl chr 8:19,768,375...19,777,862

Kidins220

kinase D-interacting substrate 220

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4820793 (PMID:19449316)

PMID:19449316

GO_REF:0000107

NCBI chr 6:41,618,207...41,706,990
Ensembl chr 6:41,618,294...41,703,256

Kif3a

kinesin family member 3a

acts_upstream_of_or_within

MGI:1329045 (PMID:19286674)

PMID:19286674

NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191

Kifbp

kinesin family binding protein

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4939684 (PMID:27996060)

GO_REF:0000107

NCBI chr20:30,512,899...30,532,504
Ensembl chr20:30,512,901...30,532,476

Klf1

KLF transcription factor 1

acts_upstream_of_or_within

MGI:1857557 (PMID:7753194)

PMID:7753194

NCBI chr19:23,250,627...23,253,802
Ensembl chr19:23,250,631...23,253,758

Klf2

KLF transcription factor 2

acts_upstream_of_or_within

MGI:3047647 (PMID:15947087), (PMID:9859212)

PMID:9859212 PMID:15947087

NCBI chr16:17,521,107...17,523,739
Ensembl chr16:17,514,552...17,523,944

Kmt2d

lysine methyltransferase 2D

acts_upstream_of_or_within

MGI:3623309 (PMID:16540515)

PMID:16540515

NCBI chr 7:129,980,744...130,022,088
Ensembl chr 7:129,962,887...130,020,325

Lig4

DNA ligase 4

acts_upstream_of_or_within

MGI:1857720|MGI:1857732 (PMID:10911993), (PMID:16777961), (PMID:9823897)

PMID:9823897 PMID:10911993 PMID:16777961

NCBI chr16:79,518,393...79,526,956
Ensembl chr16:79,518,312...79,527,040

Lrp1b

LDL receptor related protein 1B

acts_upstream_of_or_within

MGI:4459742|MGI:4459800 (PMID:20383322)

PMID:20383322

NCBI chr 3:24,594,302...26,715,037
Ensembl chr 3:24,594,991...26,715,505

Ly6e

lymphocyte antigen 6 family member E

acts_upstream_of_or_within

MGI:2429638 (PMID:11784869)

PMID:11784869

NCBI chr 7:106,935,530...106,939,689
Ensembl chr 7:106,935,761...106,939,689

Maff

MAF bZIP transcription factor F

acts_upstream_of_or_within

MGI:1858732|MGI:96911 (PMID:15087497)

PMID:15087497

NCBI chr 7:110,912,367...110,923,711
Ensembl chr 7:110,912,499...110,923,851

Mafg

MAF bZIP transcription factor G

acts_upstream_of_or_within

MGI:1858732 (PMID:15087497)

PMID:15087497

NCBI chr10:105,903,307...105,911,808
Ensembl chr10:105,903,237...105,912,026

Man2a1

mannosidase, alpha, class 2A, member 1

acts_upstream_of_or_within

MGI:2150656 (PMID:16754854)

PMID:16754854

NCBI chr 9:104,252,001...104,408,349
Ensembl chr 9:104,252,001...104,408,349

Mapk8ip3

mitogen-activated protein kinase 8 interacting protein 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3527900 (PMID:18324732)

PMID:18324732

GO_REF:0000107

NCBI chr10:13,918,417...13,958,335
Ensembl chr10:13,918,400...13,958,273

Mbd3

methyl-CpG binding domain protein 3

acts_upstream_of_or_within

MGI:2388006 (PMID:17287250)

PMID:17287250

NCBI chr 7:9,312,961...9,320,166
Ensembl chr 7:9,313,098...9,320,165

Mbnl1

muscleblind-like splicing regulator 1

involved_in

(MGI:2675975|PMID:12915312)

PMID:12915312

MGI:2675975

NCBI chr 2:144,639,819...144,814,395
Ensembl chr 2:144,670,285...144,814,368

Mecom

MDS1 and EVI1 complex locus

acts_upstream_of_or_within

MGI:2158381 (PMID:17029558)

PMID:17029558

NCBI chr 2:112,909,353...113,464,583
Ensembl chr 2:112,909,321...113,464,590

Med1

mediator complex subunit 1

acts_upstream_of_or_within

MGI:2684189 (PMID:14500757)

PMID:14500757

NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299

Meg3

maternally expressed 3

acts_upstream_of_or_within

MGI:3842511|MGI:4840060 (PMID:19264764), (PMID:20610486)

PMID:19264764 PMID:20610486

NCBI chr 6:128,491,808...128,524,010

Mgat1

alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

acts_upstream_of_or_within

MGI:1857564 (PMID:8290590)

PMID:8290590

NCBI chr10:33,563,642...33,582,718
Ensembl chr10:33,561,388...33,591,503

Mib1

MIB E3 ubiquitin protein ligase 1

acts_upstream_of_or_within

MGI:3603514 (PMID:16000382)

PMID:16000382

NCBI chr18:1,802,519...1,926,988
Ensembl chr18:1,802,519...1,920,689

Mir106b

microRNA 106b

acts_upstream_of_or_within

MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619065|MGI:3619266|MGI:3619439|MGI:3629917|MGI:3629918 (PMID:18329372)

NCBI chr12:17,043,344...17,043,425
Ensembl chr12:17,043,344...17,043,425

Mir17

microRNA 17

acts_upstream_of_or_within

MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619060|MGI:3619266|MGI:3619439|MGI:3629917|MGI:3629918 (PMID:18329372)

NCBI chr15:92,180,629...92,180,712
Ensembl chr15:92,180,629...92,180,712

Mir18a

microRNA 18a

acts_upstream_of_or_within

MGI:2676872|MGI:3618743|MGI:3619060|MGI:3619065|MGI:3619266|MGI:3619439|MGI:3629917|MGI:3629918 (PMID:18329372)

NCBI chr15:92,180,765...92,180,860
Ensembl chr15:92,180,765...92,180,860

Mir19a

microRNA 19a

acts_upstream_of_or_within

MGI:2676844|MGI:2676872|MGI:3619060|MGI:3619065|MGI:3619266|MGI:3619439|MGI:3629917|MGI:3629918 (PMID:18329372)

NCBI chr15:92,180,912...92,180,993
Ensembl chr15:92,180,912...92,180,993

Mir19b1

microRNA 19b-1

acts_upstream_of_or_within

MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619060|MGI:3619065|MGI:3619266|MGI:3619439|MGI:3629918 (PMID:18329372)

NCBI chr15:92,181,214...92,181,300
Ensembl chr15:92,181,214...92,181,300

Mir20a

microRNA 20a

acts_upstream_of_or_within

MGI:2676844|MGI:3618743|MGI:3619060|MGI:3619065|MGI:3619266|MGI:3619439|MGI:3629917|MGI:3629918 (PMID:18329372)

NCBI chr15:92,181,084...92,181,168
Ensembl chr15:92,181,084...92,181,168

Mir25

microRNA 25

acts_upstream_of_or_within

MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619060|MGI:3619065|MGI:3619439|MGI:3629917|MGI:3629918 (PMID:18329372)

NCBI chr12:17,042,932...17,043,015
Ensembl chr12:17,042,932...17,043,015

Mir92a1

microRNA 92a-1

acts_upstream_of_or_within

MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619060|MGI:3619065|MGI:3619266|MGI:3619439|MGI:3629917 (PMID:18329372)

NCBI chr15:92,181,336...92,181,413
Ensembl chr15:92,181,336...92,181,413

Mir93

microRNA 93

acts_upstream_of_or_within

MGI:2676844|MGI:2676872|MGI:3618743|MGI:3619060|MGI:3619065|MGI:3619266|MGI:3629917|MGI:3629918 (PMID:18329372)

NCBI chr12:17,043,135...17,043,221
Ensembl chr12:17,043,135...17,043,221

Mosmo

modulator of smoothened

acts_upstream_of_or_within

(PMID:34486668)

PMID:34486668

NCBI chr 1:175,217,680...175,288,521
Ensembl chr 1:175,217,545...175,288,334

Mrtfb

myocardin related transcription factor B

acts_upstream_of_or_within

MGI:3587937 (PMID:17183527)

PMID:17183527

NCBI chr10:1,116,315...1,278,106
Ensembl chr10:1,116,310...1,277,897

Msh2

mutS homolog 2

involved_in
NOT|acts_upstream_of_or_within

GO_REF:0000107
MGI:98834 (PMID:9425892)
MGI:98834 (PMID:9288110)

PMID:9288110 PMID:9425892

GO_REF:0000107

NCBI chr 6:6,813,793...6,872,960
Ensembl chr 6:6,813,795...6,872,938

Msx1

msh homeobox 1

acts_upstream_of_or_within

MGI:1926386 (PMID:17601530)

PMID:17601530

NCBI chr14:72,961,036...72,964,970
Ensembl chr14:72,961,148...72,964,966

Mt-nd4

mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4

RGD

PMID:17307910

RGD:2302308

NCBI chr MT:10,160...11,537
NCBI chr MT:10,160...11,537
NCBI chr MT:10,160...11,537
NCBI chr MT:10,160...11,537
Ensembl chr MT:10,160...11,537

Mtss1

MTSS I-BAR domain containing 1

acts_upstream_of_or_within

MGI:105373 (PMID:21406566)

PMID:21406566

NCBI chr 7:90,488,751...90,628,007
Ensembl chr 7:90,488,754...90,627,968

Muc1

mucin 1, cell surface associated

RGD

PMID:21263748

RGD:7349384

NCBI chr 2:174,635,989...174,640,738
Ensembl chr 2:174,635,995...174,640,733

Myb

MYB proto-oncogene, transcription factor

acts_upstream_of_or_within

MGI:2662859|MGI:3047076 (PMID:10523863), (PMID:17927961)

PMID:10523863 PMID:17927961

NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057

Mybphl

myosin binding protein H-like

acts_upstream_of_or_within

MGI:5548569 (PMID:27996060)

NCBI chr 2:196,005,297...196,018,826
Ensembl chr 2:196,005,325...196,018,824

Myc

MYC proto-oncogene, bHLH transcription factor

RGD

PMID:23077551

RGD:7207883

NCBI chr 7:93,593,705...93,598,633
Ensembl chr 7:93,593,705...93,598,630

Myh10

myosin heavy chain 10

acts_upstream_of_or_within

MGI:2386445|MGI:3052104 (PMID:11283949), (PMID:12893741), (PMID:9356462)

PMID:9356462 PMID:11283949 PMID:12893741

NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165

Myh6

myosin heavy chain 6

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3652543 (PMID:8878443)

PMID:8878443

GO_REF:0000107

NCBI chr15:28,418,120...28,442,316
Ensembl chr15:28,417,616...28,441,720

Myh9

myosin, heavy chain 9

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3511350|MGI:3641195 (PMID:15555549), (PMID:16630581)

PMID:15555549 PMID:16630581

GO_REF:0000107

NCBI chr 7:109,343,718...109,424,457
Ensembl chr 7:109,343,706...109,424,457

Myo18b

myosin XVIIIb

acts_upstream_of_or_within

MGI:3829997 (PMID:18761673)

PMID:18761673

NCBI chr12:43,747,003...43,953,694
Ensembl chr12:43,747,010...43,953,695

Myo1e

myosin IE

acts_upstream_of_or_within

MGI:3526864 (PMID:17143286)

PMID:17143286

NCBI chr 8:70,887,934...71,080,180
Ensembl chr 8:70,887,870...71,080,169

N4bp2l2

NEDD4 binding protein 2-like 2

acts_upstream_of_or_within

(PMID:18360097)

PMID:18360097

NCBI chr12:137,342...200,292
Ensembl chr12:103,590...197,784

Nbn

nibrin

involved_in

GO_REF:0000024
(MGI:2680772|PMID:14612522)

PMID:14612522

GO_REF:0000024 MGI:2680772

NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150

Nckap1

NCK-associated protein 1

acts_upstream_of_or_within

MGI:3578145 (PMID:16831833)

PMID:16831833

NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217

Ncor1

nuclear receptor co-repressor 1

involved_in

MGI:1337080 (PMID:32467224)

PMID:32467224

NCBI chr10:46,999,536...47,142,294
Ensembl chr10:46,999,536...47,141,032

Ncor2

nuclear receptor co-repressor 2

acts_upstream_of_or_within
involved_in

MGI:3765904 (PMID:17928865)
MGI:1349717 (PMID:32467224)

PMID:17928865 PMID:32467224

NCBI chr12:31,466,418...31,628,319
Ensembl chr12:31,466,412...31,628,319

Nlrp5

NLR family, pyrin domain containing 5

acts_upstream_of_or_within

MGI:2178449 (PMID:11062459), (PMID:18804437)

PMID:11062459 PMID:18804437

NCBI chr 1:67,778,037...67,810,941
Ensembl chr 1:67,777,948...68,023,736

Nmt1

N-myristoyltransferase 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3586313 (PMID:15753093)

PMID:15753093

GO_REF:0000107

NCBI chr10:87,988,826...88,025,405
Ensembl chr10:87,988,826...88,022,648

nodal growth differentiation factor

acts_upstream_of_or_within

MGI:2158732|MGI:2180793 (PMID:11311163), (PMID:15485907)

PMID:11311163 PMID:15485907

NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837

Nog

noggin

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1862000 (PMID:17359964)

PMID:17359964

GO_REF:0000107

NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339

Nos3

nitric oxide synthase 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:11732991)

PMID:11732991

GO_REF:0000107

NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166

Notch1

notch receptor 1

acts_upstream_of_or_within

MGI:1857230 (PMID:7789282)

PMID:7789282

NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531

Notch2

notch receptor 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857783 (PMID:17359302)

PMID:17359302

GO_REF:0000107

NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088

Npat

nuclear protein, co-activator of histone transcription

acts_upstream_of_or_within

MGI:5636907 (PMID:27996060)

NCBI chr 8:53,932,993...53,970,875
Ensembl chr 8:53,932,993...53,970,875

Nr2f2

nuclear receptor subfamily 2, group F, member 2

acts_upstream_of_or_within

MGI:2385933|MGI:3579117 (PMID:17404209)

PMID:17404209

NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031

Nradd

neurotrophin receptor associated death domain

RGD

PMID:12095158

RGD:1299507

NCBI chr 8:110,599,667...110,603,068
Ensembl chr 8:110,599,667...110,603,149

Nrbp1

nuclear receptor binding protein 1

involved_in

(MGI:5426079|PMID:22510880)

PMID:22510880

MGI:5426079

NCBI chr 6:25,122,635...25,133,209
Ensembl chr 6:25,122,635...25,133,182

Ns5atp4

NS5A transactivated protein 4

acts_upstream_of_or_within

MGI:4432969 (PMID:27996060)

NCBI chr 2:175,494,406...175,507,281
Ensembl chr 2:175,494,304...175,510,663

Nsrp1

nuclear speckle splicing regulatory protein 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3923407 (PMID:21296756)

PMID:21296756

GO_REF:0000107

NCBI chr10:61,880,807...61,914,471
Ensembl chr10:61,880,825...61,914,471

Nsun2

NOP2/Sun RNA methyltransferase 2

acts_upstream_of_or_within

MGI:4432654 (PMID:27996060)

NCBI chr 1:33,662,139...33,685,887
Ensembl chr 1:33,662,139...33,685,862

Nxn

nucleoredoxin

acts_upstream_of_or_within

MGI:5548389 (PMID:27996060)

NCBI chr10:61,109,322...61,247,578
Ensembl chr10:61,110,020...61,248,251

Ocrl

OCRL, inositol polyphosphate-5-phosphatase

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:103257 (PMID:20195868)

PMID:20195868

GO_REF:0000107

NCBI chr X:127,089,508...127,140,362
Ensembl chr X:127,089,590...127,140,362

Ooep

oocyte expressed protein

acts_upstream_of_or_within

MGI:3812181 (PMID:18804437)

PMID:18804437

NCBI chr 8:79,223,388...79,224,554
Ensembl chr 8:79,223,375...79,224,541

Otud7b

OTU deubiquitinase 7B

acts_upstream_of_or_within

MGI:5637162 (PMID:27996060)

NCBI chr 2:183,661,955...183,722,584
Ensembl chr 2:183,662,163...183,718,674

P2ry2

purinergic receptor P2Y2

RGD

PMID:14517997

RGD:2316694

NCBI chr 1:155,352,050...155,367,423
Ensembl chr 1:155,351,165...155,367,632

Palb2

partner and localizer of BRCA2

acts_upstream_of_or_within

MGI:5495930 (PMID:23657012)

PMID:23657012

NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990

Pcgf2

polycomb group ring finger 2

acts_upstream_of_or_within

MGI:88174 (PMID:11290297)

PMID:11290297

NCBI chr10:82,682,563...82,694,563
Ensembl chr10:82,683,553...82,693,406

Pcnt

pericentrin

acts_upstream_of_or_within

MGI:3799303 (PMID:20096683)

PMID:20096683

NCBI chr20:12,190,597...12,278,723
Ensembl chr20:12,191,648...12,278,710

Pdgfra

platelet derived growth factor receptor alpha

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1926728 (PMID:10331973), (PMID:17143286)

PMID:10331973 PMID:17143286

GO_REF:0000107

NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335

Pdgfrb

platelet derived growth factor receptor beta

acts_upstream_of_or_within

MGI:2135508 (PMID:17143286)

PMID:17143286

NCBI chr18:54,499,962...54,538,840
Ensembl chr18:54,499,964...54,538,843

Pdzk1

PDZ domain containing 1

acts_upstream_of_or_within

MGI:5692756 (PMID:27996060)

NCBI chr 2:184,376,161...184,407,514
Ensembl chr 2:184,376,161...184,407,514

Pitpnb

phosphatidylinositol transfer protein, beta

acts_upstream_of_or_within

MGI:3582490 (PMID:11907258)

PMID:11907258

NCBI chr12:45,249,308...45,298,388
Ensembl chr12:45,249,333...45,298,314

Pitx2

paired-like homeodomain 2

acts_upstream_of_or_within

MGI:2136268 (PMID:11493526)

PMID:11493526

NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293

Pkd1

polycystin 1, transient receptor potential channel interacting

acts_upstream_of_or_within

MGI:1197519|MGI:1857562 (PMID:16282979)

PMID:16282979

NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128

Plcg1

phospholipase C, gamma 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2388142 (PMID:11744703)

PMID:11744703

GO_REF:0000107

NCBI chr 3:149,385,587...149,416,330
Ensembl chr 3:149,385,587...149,416,330

Plod3

procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3620600|MGI:3620601 (PMID:16467571)

PMID:16467571

GO_REF:0000107

NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960

Polb

DNA polymerase beta

acts_upstream_of_or_within

MGI:4950969 (PMID:27996060)

NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812

Polg2

DNA polymerase gamma 2, accessory subunit

acts_upstream_of_or_within

MGI:5470227 (PMID:23197651)

PMID:23197651

NCBI chr10:91,712,586...91,723,008
Ensembl chr10:91,712,586...91,723,008

Prdm1

PR/SET domain 1

acts_upstream_of_or_within

MGI:3605483 (PMID:15750184)

PMID:15750184

NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488

Prkcsh

PRKCSH beta subunit of glucosidase II

acts_upstream_of_or_within

MGI:5442302 (PMID:21685914)

PMID:21685914

NCBI chr 8:20,534,787...20,546,493
Ensembl chr 8:20,534,880...20,546,492

Prmt1

protein arginine methyltransferase 1

acts_upstream_of_or_within

MGI:2448365 (PMID:10848611)

PMID:10848611

NCBI chr 1:95,458,853...95,468,176
Ensembl chr 1:95,458,850...95,468,345

Prrc2b

proline-rich coiled-coil 2B

acts_upstream_of_or_within

MGI:4461729 (PMID:27996060)

NCBI chr 3:15,433,357...15,519,105
Ensembl chr 3:15,465,294...15,519,104

Psph

phosphoserine phosphatase

acts_upstream_of_or_within

MGI:4950198 (PMID:27996060)

NCBI chr12:26,882,524...26,905,084
Ensembl chr12:26,883,133...26,905,074

Ptch1

patched 1

acts_upstream_of_or_within

MGI:2384818 (PMID:21406566)

PMID:21406566

NCBI chr17:1,542,705...1,607,730
Ensembl chr17:1,542,877...1,607,333

Pth1r

parathyroid hormone 1 receptor

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5014612 (PMID:27996060)

GO_REF:0000107

NCBI chr 8:110,693,910...110,725,458
Ensembl chr 8:110,697,485...110,719,729

Ptprr

protein tyrosine phosphatase, receptor type, R

involved_in

ISS
ISO
IEA

GO_REF:0000024
(PMID:10601328)
GO_REF:0000107

UniProt
RGD
Ensembl

PMID:10601328

GO_REF:0000024 GO_REF:0000107

NCBI chr 7:51,662,595...51,929,605
Ensembl chr 7:51,662,595...51,929,603

Rad51b

RAD51 paralog B

acts_upstream_of_or_within

MGI:3621480|MGI:98834 (PMID:10567591)

PMID:10567591

NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979

Rbbp6

RB binding protein 6, ubiquitin ligase

acts_upstream_of_or_within

MGI:3711066 (PMID:17470788)

PMID:17470788

NCBI chr 1:177,503,988...177,537,397
Ensembl chr 1:177,503,313...177,535,678

Rcn1

reticulocalbin 1

acts_upstream_of_or_within

(PMID:19474196)

PMID:19474196

NCBI chr 3:91,841,052...91,855,295
Ensembl chr 3:91,841,052...91,855,295

Rdh10

retinol dehydrogenase 10

acts_upstream_of_or_within

(PMID:17473173)

PMID:17473173

NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572

Resp18

regulated endocrine-specific protein 18

acts_upstream_of_or_within

MGI:4949626 (PMID:21104147)

PMID:21104147

NCBI chr 9:76,765,179...76,771,824
Ensembl chr 9:76,764,590...76,778,722

Ric8a

RIC8 guanine nucleotide exchange factor A

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3608888 (PMID:16221497)

PMID:16221497

GO_REF:0000107

NCBI chr 1:195,935,162...195,941,469
Ensembl chr 1:195,935,349...195,941,467

Rnaseh2b

ribonuclease H2, subunit B

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4432164 (PMID:22802351)

PMID:22802351

GO_REF:0000107

NCBI chr15:36,541,200...36,592,016
Ensembl chr15:36,541,218...36,584,118

Rpa1

replication protein A1

acts_upstream_of_or_within

MGI:3582609 (PMID:15470499)

PMID:15470499

NCBI chr10:60,148,869...60,199,970
Ensembl chr10:60,148,793...60,199,949

Rpgrip1l

Rpgrip1-like

acts_upstream_of_or_within

MGI:3716208 (PMID:17553904)

PMID:17553904

NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083

Rrn3

RRN3 homolog, RNA polymerase I transcription factor

acts_upstream_of_or_within

MGI:3584037 (PMID:15989966)

PMID:15989966

NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663

Rtcb

RNA 2',3'-cyclic phosphate and 5'-OH ligase

acts_upstream_of_or_within

(PMID:20510672)

PMID:20510672

NCBI chr 7:17,907,668...17,927,136
Ensembl chr 7:17,907,705...17,927,132

Rundc1

RUN domain containing 1

acts_upstream_of_or_within

MGI:5548750 (PMID:27996060)

NCBI chr10:86,361,635...86,375,446
Ensembl chr10:86,361,051...86,370,878

Runx1

RUNX family transcription factor 1

acts_upstream_of_or_within

MGI:3043614 (PMID:16174759)

PMID:16174759

NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542

Rxra

retinoid X receptor alpha

acts_upstream_of_or_within

MGI:98215 (PMID:9892670)

PMID:9892670

NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712

Rxrb

retinoid X receptor beta

acts_upstream_of_or_within

MGI:98214 (PMID:9892670)

PMID:9892670

NCBI chr20:4,816,813...4,823,267
Ensembl chr20:4,816,815...4,828,773

Sall4

spalt-like transcription factor 4

acts_upstream_of_or_within

MGI:3692447 (PMID:17060609)

PMID:17060609

NCBI chr 3:157,474,067...157,491,055
Ensembl chr 3:157,474,642...157,490,822

Sec24c

SEC24 homolog C, COPII coat complex component

acts_upstream_of_or_within

MGI:4431706 (PMID:24876386)

PMID:24876386

NCBI chr15:3,602,460...3,624,524
Ensembl chr15:3,602,460...3,624,422

Sec24d

SEC24 homolog D, COPII coat complex component

acts_upstream_of_or_within

MGI:4330860|MGI:4340594 (PMID:23596517), (PMID:24876386)

PMID:23596517 PMID:24876386

NCBI chr 2:211,418,557...211,526,588
Ensembl chr 2:211,418,623...211,526,587

Sh3pxd2a

SH3 and PX domains 2A

acts_upstream_of_or_within

MGI:5636944 (PMID:27996060)

NCBI chr 1:246,153,660...246,359,806
Ensembl chr 1:246,160,502...246,360,166

Sin3a

SIN3 transcription regulator family member A

acts_upstream_of_or_within

MGI:3583656 (PMID:15998811)

PMID:15998811

NCBI chr 8:57,481,539...57,536,195
Ensembl chr 8:57,481,573...57,536,192

Slc25a20

solute carrier family 25 member 20

acts_upstream_of_or_within

MGI:4431570 (PMID:27996060)

NCBI chr 8:109,365,056...109,386,512
Ensembl chr 8:109,365,002...109,386,512

Slc30a1

solute carrier family 30 member 1

acts_upstream_of_or_within

MGI:3056498 (PMID:15452870)

PMID:15452870

NCBI chr13:103,491,037...103,494,910
Ensembl chr13:103,491,037...103,494,910

Slc34a2

solute carrier family 34 member 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3841013 (PMID:19233126)

PMID:19233126

GO_REF:0000107

NCBI chr14:57,910,931...57,930,236
Ensembl chr14:57,910,480...57,930,436

Slc39a1

solute carrier family 39 member 1

acts_upstream_of_or_within

MGI:2147269|MGI:3625131 (PMID:16652366)

PMID:16652366

NCBI chr 2:175,703,413...175,709,063
Ensembl chr 2:175,703,441...175,709,058

Slc39a3

solute carrier family 39 member 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1353474 (PMID:16652366)

PMID:16652366

GO_REF:0000107

NCBI chr 7:8,676,845...8,682,846
Ensembl chr 7:8,676,759...8,685,149

Slc5a7

solute carrier family 5 member 7

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4942035 (PMID:27996060)

GO_REF:0000107

NCBI chr 9:7,595,440...7,626,258
Ensembl chr 9:7,595,444...7,626,258

Slit2

slit guidance ligand 2

acts_upstream_of_or_within

MGI:2179460 (PMID:18829537)

PMID:18829537

NCBI chr14:62,616,337...62,955,934
Ensembl chr14:62,617,067...62,955,948

Smad2

SMAD family member 2

acts_upstream_of_or_within

MGI:1201674|MGI:1857692 (PMID:15183723), (PMID:17849440)

PMID:15183723 PMID:17849440

NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323

Smad3

SMAD family member 3

acts_upstream_of_or_within

MGI:108051 (PMID:15183723)

PMID:15183723

NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960

Smad4

SMAD family member 4

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1858049 (PMID:9420335)

PMID:9420335

GO_REF:0000107

NCBI chr18:67,243,742...67,274,438
Ensembl chr18:67,243,742...67,274,438

Smarca4

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

acts_upstream_of_or_within

MGI:2386105|MGI:3605892|MGI:3611933 (PMID:16287714), (PMID:23319608)

PMID:16287714 PMID:23319608

NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975

Smg9

SMG9 nonsense mediated mRNA decay factor

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5692712 (PMID:27996060)

GO_REF:0000107

NCBI chr 1:79,988,540...80,011,262
Ensembl chr 1:79,988,612...80,011,254

Smo

smoothened, frizzled class receptor

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2176255 (PMID:17881493)

PMID:17881493

GO_REF:0000107

NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829

Smpd4

sphingomyelin phosphodiesterase 4

acts_upstream_of_or_within

MGI:5548688 (PMID:27996060)

NCBI chr11:83,362,534...83,386,257
Ensembl chr11:83,362,534...83,386,250

Sox10

SRY-box transcription factor 10

acts_upstream_of_or_within

MGI:98370 (PMID:16790476)

PMID:16790476

NCBI chr 7:110,725,274...110,734,651
Ensembl chr 7:110,725,274...110,735,544

Sox18

SRY-box transcription factor 18

acts_upstream_of_or_within
NOT|acts_upstream_of_or_within

MGI:1856135|MGI:1856136|MGI:2178809 (PMID:10742113), (PMID:18931657), (PMID:19429912)
MGI:2178809 (PMID:11094083)

PMID:10742113 PMID:11094083 PMID:18931657 PMID:19429912

NCBI chr 3:168,785,488...168,787,290
Ensembl chr 3:168,785,490...168,787,290

Sox5

SRY-box transcription factor 5

acts_upstream_of_or_within

MGI:2447147 (PMID:17084361)

PMID:17084361

NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852

Sox6

SRY-box transcription factor 6

acts_upstream_of_or_within

MGI:2447148 (PMID:17084361)

PMID:17084361

NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386

Sox8

SRY-box transcription factor 8

involved_in
acts_upstream_of_or_within

GO_REF:0000024
MGI:98358 (PMID:16790476)

PMID:16790476

GO_REF:0000024

NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818

Sp1

Sp1 transcription factor

acts_upstream_of_or_within

MGI:1277166 (PMID:17584888)

NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961

Sp2

Sp2 transcription factor

acts_upstream_of_or_within

MGI:4441277 (PMID:20221402)

PMID:20221402

NCBI chr10:81,940,580...81,970,040
Ensembl chr10:81,940,587...81,970,548

Sp3

Sp3 transcription factor

acts_upstream_of_or_within

MGI:98372 (PMID:17584888)

NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342

Speg

striated muscle enriched protein kinase

acts_upstream_of_or_within

MGI:4830540 (PMID:19118250)

PMID:19118250

NCBI chr 9:76,865,714...76,923,170
Ensembl chr 9:76,865,754...76,923,144

Srf

serum response factor

acts_upstream_of_or_within

MGI:2158696 (PMID:9799237)

PMID:9799237

NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733

Srsf1

serine and arginine rich splicing factor 1

acts_upstream_of_or_within

MGI:3530159 (PMID:15652482)

PMID:15652482

NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336

Ssr2

signal sequence receptor subunit 2

acts_upstream_of_or_within

MGI:5637009 (PMID:27996060)

NCBI chr 2:174,048,291...174,057,043
Ensembl chr 2:174,048,460...174,057,042

Stil

STIL, centriolar assembly protein

acts_upstream_of_or_within

MGI:2152962 (PMID:10385121)

PMID:10385121

NCBI chr 5:128,520,837...128,573,732
Ensembl chr 5:128,520,953...128,573,730

Syf2

SYF2 pre-mRNA-splicing factor

acts_upstream_of_or_within

MGI:3904866 (PMID:22448250)

PMID:22448250

NCBI chr 5:147,156,492...147,164,416
Ensembl chr 5:147,156,480...147,164,414

Syvn1

synoviolin 1

acts_upstream_of_or_within

MGI:2679656 (PMID:15611074)

PMID:15611074

NCBI chr 1:203,339,235...203,346,137
Ensembl chr 1:203,339,619...203,346,152

Tab1

TGF-beta activated kinase 1/MAP3K7 binding protein 1

acts_upstream_of_or_within

MGI:2667182 (PMID:12464436)

PMID:12464436

NCBI chr 7:111,675,829...111,707,058
Ensembl chr 7:111,686,371...111,707,058

Taf10

TATA-box binding protein associated factor 10

involved_in

MGI:3606185 (PMID:28893950)

PMID:28893950

NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376

Tanc2

tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4346764 (PMID:21068316)

PMID:21068316

GO_REF:0000107

NCBI chr10:90,553,124...90,873,477
Ensembl chr10:90,553,002...90,868,756

Tbx3

T-box transcription factor 3

acts_upstream_of_or_within

MGI:3710254 (PMID:17473172)

PMID:17473172

NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708

Tcf7l2

transcription factor 7 like 2

acts_upstream_of_or_within

MGI:4431951 (PMID:27996060)

NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967

Tctn1

tectonic family member 1

acts_upstream_of_or_within

MGI:3716885 (PMID:16357211)

PMID:16357211

NCBI chr12:34,309,795...34,347,190
Ensembl chr12:34,309,897...34,342,267

Tead4

TEA domain transcription factor 4

acts_upstream_of_or_within

MGI:106907 (PMID:18083014)

PMID:18083014

NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323

Tent5c

terminal nucleotidyltransferase 5C

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5637082 (PMID:27996060)

GO_REF:0000107

NCBI chr 2:187,853,026...187,875,260
Ensembl chr 2:187,853,024...187,894,744

Terf2

telomeric repeat binding factor 2

acts_upstream_of_or_within

MGI:3619525 (PMID:15968270)

PMID:15968270

NCBI chr19:34,976,963...35,005,813
Ensembl chr19:34,977,471...35,005,819

Tgfb3

transforming growth factor, beta 3

acts_upstream_of_or_within

MGI:2158731 (PMID:14729481)

PMID:14729481

NCBI chr 6:105,704,058...105,726,661
Ensembl chr 6:105,704,236...105,726,564

Tgfbr1

transforming growth factor, beta receptor 1

acts_upstream_of_or_within

MGI:2386570|MGI:2388050 (PMID:11285230), (PMID:14729481), (PMID:17078885)

PMID:11285230 PMID:14729481 PMID:17078885

NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777

Tgfbr2

transforming growth factor, beta receptor 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2384513 (PMID:10030593), (PMID:18990706)

PMID:10030593 PMID:18990706

GO_REF:0000107

NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228

Tgfbr3

transforming growth factor beta receptor 3

acts_upstream_of_or_within

MGI:3818438 (PMID:17704211)

PMID:17704211

NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341

Tie1

tyrosine kinase with immunoglobulin-like and EGF-like domains 1

acts_upstream_of_or_within

MGI:108448 (PMID:11172728)

PMID:11172728

NCBI chr 5:132,000,013...132,019,658
Ensembl chr 5:132,000,015...132,019,592

transmembrane p24 trafficking protein 2

acts_upstream_of_or_within

MGI:4343479|MGI:4456438 (PMID:20178780)

PMID:20178780

NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903

Tmem100

transmembrane protein 100

acts_upstream_of_or_within

MGI:4881485|MGI:5432904|MGI:5432905 (PMID:20848592), (PMID:22783020)

PMID:20848592 PMID:22783020

NCBI chr10:74,854,779...74,861,147
Ensembl chr10:74,854,468...74,862,941

Tmem231

transmembrane protein 231

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4284576 (PMID:22179047)

PMID:22179047

GO_REF:0000107

NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269

Tp53

tumor protein p53

involved_in
NOT|acts_upstream_of_or_within

GO_REF:0000107
MGI:101816 (PMID:9425892)
MGI:101816|MGI:1343101|MGI:1924285 (PMID:17325035), (PMID:26334721), (PMID:9288110)

PMID:9288110 PMID:9425892 PMID:17325035 PMID:26334721

GO_REF:0000107

NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524

Tpm1

tropomyosin 1

acts_upstream_of_or_within

MGI:2387893 (PMID:9440710)

PMID:9440710

NCBI chr 8:67,635,479...67,662,330
Ensembl chr 8:67,635,479...67,662,802

Traf6

TNF receptor associated factor 6

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4840586 (PMID:27996060)

GO_REF:0000107

NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507

Trim28

tripartite motif-containing 28

acts_upstream_of_or_within

MGI:1928907 (PMID:22442485)

PMID:22442485

NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380

Tshz3

teashirt zinc finger homeobox 3

acts_upstream_of_or_within

MGI:3810527 (PMID:18776146)

PMID:18776146

NCBI chr 1:89,386,732...89,460,719
Ensembl chr 1:89,381,858...89,460,874

Ttn

titin

acts_upstream_of_or_within

MGI:3654306 (PMID:16702235)

PMID:16702235

NCBI chr 3:61,652,432...61,924,912
Ensembl chr 3:61,652,439...61,924,741

Twist1

twist family bHLH transcription factor 1

acts_upstream_of_or_within

MGI:3038818 (PMID:15030764)

PMID:15030764

NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653

Tymp

thymidine phosphorylase

involved_in

IEA

GO_REF:0000107

Ensembl

GO_REF:0000107

NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,770...120,443,874
Ensembl chr 7:120,438,770...120,443,874

Ube2a

ubiquitin-conjugating enzyme E2A

acts_upstream_of_or_within
NOT|acts_upstream_of_or_within

MGI:102944 (PMID:15169909)
MGI:2450874 (PMID:15169909)

PMID:15169909

NCBI chr X:116,114,339...116,125,076
Ensembl chr X:116,113,875...116,125,070

Ube2b

ubiquitin-conjugating enzyme E2B

acts_upstream_of_or_within

MGI:102959 (PMID:15169909)

PMID:15169909

NCBI chr10:36,248,434...36,263,379
Ensembl chr10:36,248,438...36,264,665

Ubr3

ubiquitin protein ligase E3 component n-recognin 3

acts_upstream_of_or_within

MGI:3718505 (PMID:17462990)

PMID:17462990

NCBI chr 3:54,649,803...54,806,779
Ensembl chr 3:54,649,992...54,806,247

Unk

unk zinc finger

acts_upstream_of_or_within

MGI:4880910 (PMID:27996060)

NCBI chr10:101,265,732...101,295,950
Ensembl chr10:101,265,703...101,295,967

Upb1

beta-ureidopropionase 1

RGD

PMID:6870258

RGD:2317093

NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590

Upf3a

UPF3A, regulator of nonsense mediated mRNA decay

acts_upstream_of

MGI:6117430 (PMID:27040500)

PMID:27040500

NCBI chr16:75,757,442...75,768,478
Ensembl chr16:75,757,441...75,769,345

Usp9x

ubiquitin specific peptidase 9, X-linked

acts_upstream_of_or_within

MGI:95387 (PMID:23861879)

PMID:23861879

NCBI chr X:9,588,825...9,726,993
Ensembl chr X:9,588,825...9,696,711

Uty

ubiquitously transcribed tetratricopeptide repeat containing, Y-linked

acts_upstream_of_or_within

MGI:3877328 (PMID:22192413), (PMID:23028370)

PMID:22192413 PMID:23028370

NCBI chr Y:942,838...1,105,313
Ensembl chr Y:924,168...1,103,422

Vegfa

vascular endothelial growth factor A

acts_upstream_of_or_within

MGI:1931047 (PMID:10229225)

PMID:10229225

NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641

Vps54

VPS54 subunit of GARP complex

involved_in

GO_REF:0000107
MGI:3613397 (PMID:16244655)

PMID:16244655

GO_REF:0000107

NCBI chr14:95,378,821...95,455,871
Ensembl chr14:95,378,012...95,455,857

Wdr19

WD repeat domain 19

acts_upstream_of_or_within

MGI:5315747|MGI:5315748 (PMID:22228095)

PMID:22228095

NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288

Wdtc1

WD and tetratricopeptide repeats 1

acts_upstream_of_or_within

MGI:3774270 (PMID:17767906)

PMID:17767906

NCBI chr 5:145,491,460...145,559,631
Ensembl chr 5:145,491,466...145,540,408

Wnt3a

Wnt family member 3A

acts_upstream_of_or_within

MGI:1857088 (PMID:4819561)

PMID:4819561

NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324

Wnt7b

Wnt family member 7B

acts_upstream_of_or_within

MGI:3793280 (PMID:18367557)

PMID:18367557

NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581

Wnt9b

Wnt family member 9B

acts_upstream_of_or_within

MGI:3526437 (PMID:16054034)

PMID:16054034

NCBI chr10:88,635,330...88,657,035
Ensembl chr10:88,635,331...88,657,035

Xrcc2

X-ray repair cross complementing 2

acts_upstream_of_or_within

MGI:3654106 (PMID:16777961)

PMID:16777961

NCBI chr 4:9,423,873...9,502,980
Ensembl chr 4:9,423,898...9,442,482

Xrcc4

X-ray repair cross complementing 4

acts_upstream_of_or_within

MGI:1926771 (PMID:9875844)

PMID:9875844

NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808

Ybx1

Y box binding protein 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2137670|MGI:3581780 (PMID:16954378)

PMID:16954378

GO_REF:0000107

NCBI chr 5:132,882,137...132,898,885
Ensembl chr 5:132,882,145...132,898,862

Ybx3

Y box binding protein 3

acts_upstream_of_or_within

MGI:99146 (PMID:16954378)

PMID:16954378

NCBI chr 4:165,129,747...165,153,101
Ensembl chr 4:165,129,758...165,153,161

Ythdc1

YTH N6-methyladenosine RNA binding protein C1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:6194737 (PMID:29799838)

PMID:29799838

GO_REF:0000107

NCBI chr14:21,185,438...21,215,934
Ensembl chr14:21,185,440...21,216,028

Zbtb18

zinc finger and BTB domain containing 18

acts_upstream_of_or_within

MGI:3851929 (PMID:19409883)

PMID:19409883

NCBI chr13:89,439,501...89,447,958
Ensembl chr13:89,439,420...89,448,862

Zfand5

zinc finger AN1-type containing 5

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3526860 (PMID:17143286)

PMID:17143286

GO_REF:0000107

NCBI chr 1:218,765,735...218,780,391
Ensembl chr 1:218,766,614...218,775,843

Zfp335

zinc finger protein 335

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3857418|MGI:4125700 (PMID:23178126)

PMID:23178126

GO_REF:0000107

NCBI chr 3:153,618,587...153,648,213
Ensembl chr 3:153,627,467...153,647,054

Zfp42

zinc finger protein 42

acts_upstream_of_or_within

MGI:99187 (PMID:21233130)

PMID:21233130

NCBI chr16:48,836,463...48,845,443
Ensembl chr16:48,836,648...48,845,401

Zfp568

zinc finger protein 568

involved_in

(MGI:5908476|PMID:28522536)

PMID:28522536

NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505

Zfpm2

zinc finger protein, multitype 2

acts_upstream_of_or_within

MGI:3587413 (PMID:16103912)

PMID:16103912

NCBI chr 7:71,678,658...72,116,209
Ensembl chr 7:71,678,880...72,116,205

Zmiz1

zinc finger, MIZ-type containing 1

acts_upstream_of_or_within

MGI:3769389 (PMID:17967885)

PMID:17967885

NCBI chr16:1,027,083...1,232,616
Ensembl chr16:1,027,325...1,232,597

blastocyst development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Atp1b1

ATPase Na+/K+ transporting subunit beta 1

acts_upstream_of_or_within

MGI:1888635

NCBI chr13:76,786,580...76,807,096
Ensembl chr13:76,786,578...76,807,459

Bnip2

BCL2 interacting protein 2

acts_upstream_of_or_within

(PMID:19117032)

PMID:19117032

NCBI chr 8:70,640,436...70,661,782
Ensembl chr 8:70,640,445...70,675,590

Capn2

calpain 2

acts_upstream_of_or_within

MGI:3628453 (PMID:16433929)

PMID:16433929

NCBI chr13:94,150,244...94,200,969
Ensembl chr13:94,150,240...94,200,969

Cdk11b

cyclin-dependent kinase 11B

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3043373 (PMID:15060143)

PMID:15060143

GO_REF:0000107

NCBI chr 5:166,212,761...166,238,883
Ensembl chr 5:166,212,829...166,238,876

Cdx2

caudal type homeo box 2

acts_upstream_of_or_within

MGI:1857928 (PMID:15788452)

PMID:15788452

NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142

Dad1

defender against cell death 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2445490 (PMID:10748466)

PMID:10748466

GO_REF:0000107

NCBI chr15:27,677,286...27,697,120
Ensembl chr15:27,677,268...27,697,347

Dmbt1

deleted in malignant brain tumors 1

acts_upstream_of_or_within

MGI:3497714 (PMID:15452149)

PMID:15452149

NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478

Elf3

E74 like ETS transcription factor 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:16630543)

PMID:16630543

GO_REF:0000107

NCBI chr13:46,690,460...46,695,394
Ensembl chr13:46,690,466...46,695,481

Emg1

EMG1 N1-specific pseudouridine methyltransferase

acts_upstream_of_or_within

MGI:4839753 (PMID:20858271)

PMID:20858271

NCBI chr 4:157,509,258...157,517,540
Ensembl chr 4:157,509,277...157,517,540

Eomes

eomesodermin

acts_upstream_of_or_within

MGI:3579497 (PMID:15788452)

PMID:15788452

NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316

Etv2

ETS variant transcription factor 2

acts_upstream_of_or_within

(PMID:16630543)

PMID:16630543

NCBI chr 1:85,890,562...85,894,025
Ensembl chr 1:85,890,559...85,893,431

G2e3

G2/M-phase specific E3 ubiquitin protein ligase

acts_upstream_of_or_within

MGI:3808723 (PMID:18511420)

PMID:18511420

NCBI chr 6:68,763,847...68,795,305
Ensembl chr 6:68,764,185...68,793,924

Gdf9

growth differentiation factor 9

involved_in

(PMID:24313324)

PMID:24313324

NCBI chr10:37,589,200...37,599,970
Ensembl chr10:37,595,679...37,599,672

heart and neural crest derivatives expressed 1

involved_in

(PMID:11802795)

PMID:11802795

NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213

Hnf1a

HNF1 homeobox A

acts_upstream_of_or_within

(PMID:16880268)

PMID:16880268

NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104

Hormad1

HORMA domain containing 1

involved_in

GO_REF:0000024
(MGI:4868505|PMID:21079677)

PMID:21079677

GO_REF:0000024 MGI:4868505

NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383

Kpna7

karyopherin subunit alpha 7

acts_upstream_of_or_within

MGI:6108355 (PMID:20699224)

PMID:20699224

NCBI chr12:9,576,378...9,635,247
Ensembl chr12:9,576,378...9,612,833

Med21

mediator complex subunit 21

acts_upstream_of_or_within

MGI:2445456 (PMID:10500093)

PMID:10500093

NCBI chr 4:179,560,509...179,583,811
Ensembl chr 4:179,560,579...179,567,548

N4bp2l2

NEDD4 binding protein 2-like 2

acts_upstream_of_or_within

(PMID:18360097)

PMID:18360097

NCBI chr12:137,342...200,292
Ensembl chr12:103,590...197,784

Nasp

nuclear autoantigenic sperm protein

involved_in

GO_REF:0000024
(MGI:3694318|PMID:16728391)

PMID:16728391

GO_REF:0000024 MGI:3694318

NCBI chr 5:130,057,363...130,083,003
Ensembl chr 5:130,057,363...130,082,928

Nek2

NIMA-related kinase 2

acts_upstream_of_or_within

(PMID:19117032)

PMID:19117032

NCBI chr13:103,405,818...103,419,063
Ensembl chr13:103,405,819...103,419,051

Nlrp9

NLR family, pyrin domain containing 9

acts_upstream_of_or_within

MGI:2675292|MGI:3028627 (PMID:32413845)

PMID:32413845

NCBI chr 1:68,291,180...68,341,512
Ensembl chr 1:68,291,180...68,341,512

Npm2

nucleophosmin/nucleoplasmin 2

involved_in

(PMID:12714744)

PMID:12714744

NCBI chr15:45,722,282...45,729,336
Ensembl chr15:45,722,400...45,729,726

POU class 5 homeobox 1

involved_in

(MGI:4946964|PMID:21258368)

PMID:21258368

MGI:4946964

NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891

Ppp1cc

protein phosphatase 1 catalytic subunit gamma

acts_upstream_of_or_within

MGI:2182577 (PMID:12606345)

PMID:12606345

NCBI chr12:34,383,072...34,400,553
Ensembl chr12:34,383,072...34,400,553

Psmc3

proteasome 26S subunit, ATPase 3

acts_upstream_of_or_within

MGI:2180548 (PMID:10945464)

PMID:10945464

NCBI chr 3:77,031,825...77,037,207
Ensembl chr 3:77,031,825...77,043,358

Psmc4

proteasome 26S subunit, ATPase 4

acts_upstream_of_or_within

MGI:2180553 (PMID:10945464)

PMID:10945464

NCBI chr 1:83,349,127...83,357,497
Ensembl chr 1:83,348,592...83,357,494

Rpl13

ribosomal protein L13

acts_upstream_of

(PMID:26902285)

NCBI chr19:51,153,990...51,156,541
Ensembl chr19:51,153,924...51,163,014

Rrm2

ribonucleotide reductase regulatory subunit M2

involved_in
acts_upstream_of

GO_REF:0000107
(PMID:26902285)

GO_REF:0000107

NCBI chr 6:41,339,858...41,346,774
Ensembl chr 6:41,340,557...41,346,773

Smarcb1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

acts_upstream_of_or_within

MGI:2387974|MGI:2388033 (PMID:11263494), (PMID:11313485)

PMID:11263494 PMID:11313485

NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620

Specc1

sperm antigen with calponin homology and coiled-coil domains 1

acts_upstream_of_or_within

(PMID:34166821)

PMID:34166821

NCBI chr10:46,638,947...46,912,989
Ensembl chr10:46,638,809...46,912,802

Spic

Spi-C transcription factor

acts_upstream_of_or_within

(PMID:16630543)

PMID:16630543

NCBI chr 7:23,069,815...23,077,517
Ensembl chr 7:23,069,821...23,077,548

Tgfbr1

transforming growth factor, beta receptor 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:9921650)

PMID:9921650

GO_REF:0000107

NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777

Tgfbr3

transforming growth factor beta receptor 3

acts_upstream_of_or_within

(PMID:9921650)

PMID:9921650

NCBI chr14:2,489,397...2,665,383
Ensembl chr14:2,489,397...2,663,341

Thoc2

THO complex subunit 2

acts_upstream_of_or_within

(PMID:24315442)

PMID:24315442

NCBI chr X:120,634,966...120,749,569
Ensembl chr X:120,634,968...120,749,513

Thoc5

THO complex subunit 5

acts_upstream_of_or_within

(PMID:24315442)

PMID:24315442

NCBI chr14:79,758,805...79,792,718
Ensembl chr14:79,758,917...79,792,718

Xab2

XPA binding protein 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3574459 (PMID:15725628)

PMID:15725628

GO_REF:0000107

NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692

Yap1

Yes1 associated transcriptional regulator

acts_upstream_of

MGI:3056522|MGI:3757577|MGI:4819826 (PMID:26902285)

NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010

blastocyst formation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Actl6a

actin-like 6A

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401

Bysl

bystin-like

acts_upstream_of_or_within

(PMID:17242206)

PMID:17242206

NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339

Ccnb1ip1

cyclin B1 interacting protein 1

acts_upstream_of_or_within

MGI:3050548 (PMID:17784788)

PMID:17784788

NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475

Furin

furin (paired basic amino acid cleaving enzyme)

involved_in

UniProtKB:Q61139 (MGI:5702364|PMID:26416966)
GO_REF:0000107

PMID:26416966

GO_REF:0000107 MGI:5702364

NCBI chr 1:134,348,142...134,361,182
Ensembl chr 1:134,348,144...134,364,314

Gabpa

GA binding protein transcription factor subunit alpha

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr11:23,888,586...23,917,612
Ensembl chr11:23,888,815...23,917,605

Kdm4c

lysine demethylase 4C

acts_upstream_of_or_within

(PMID:19696013)

PMID:19696013

NCBI chr 5:88,100,710...88,306,821
Ensembl chr 5:88,100,733...88,306,818

Matr3

matrin 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:27869233)

GO_REF:0000107

NCBI chr18:27,154,098...27,193,212
Ensembl chr18:27,163,714...27,193,166

Mfn2

mitofusin 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:16083859)

PMID:16083859

GO_REF:0000107

NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342

Mfng

MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 7:110,310,810...110,328,653
Ensembl chr 7:110,310,812...110,328,653

Mxi1

MAX interactor 1, dimerization protein

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 1:252,323,915...252,383,682
Ensembl chr 1:252,323,303...252,383,681

Nop2

NOP2 nucleolar protein

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 4:157,932,731...157,944,462
Ensembl chr 4:157,932,716...157,944,459

Pbrm1

polybromo 1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780

Pnldc1

PARN like ribonuclease domain containing exonuclease 1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 1:47,843,224...47,861,675
Ensembl chr 1:47,843,224...47,861,674

Ptpn18

protein tyrosine phosphatase, non-receptor type 18

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 9:36,672,325...36,689,963
Ensembl chr 9:36,672,362...36,690,995

Rpl7l1

ribosomal protein L7-like 1

acts_upstream_of_or_within

(PMID:23211737), (PMID:27869233)

NCBI chr 9:14,198,101...14,206,119
Ensembl chr 9:14,198,092...14,206,110

Rrp7a

ribosomal RNA processing 7 homolog A

acts_upstream_of_or_within

(PMID:23211737), (PMID:27869233)

NCBI chr 7:114,262,929...114,272,817
Ensembl chr 7:114,256,472...114,272,817

Rtn4

reticulon 4

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:27869233)

GO_REF:0000107

NCBI chr14:103,450,074...103,497,687
Ensembl chr14:103,449,930...103,497,686

Sf3b1

splicing factor 3b, subunit 1

acts_upstream_of_or_within

(PMID:23211737), (PMID:27869233)

NCBI chr 9:56,492,403...56,532,300
Ensembl chr 9:56,492,403...56,532,300

Sf3b6

splicing factor 3B, subunit 6

acts_upstream_of_or_within

(PMID:23211737), (PMID:27869233)

NCBI chr 6:27,826,044...27,835,086
Ensembl chr 6:27,826,029...27,835,156

Skil

SKI-like proto-oncogene

acts_upstream_of_or_within

MGI:2387096 (PMID:10811619)

PMID:10811619

NCBI chr 2:112,247,047...112,275,176
Ensembl chr 2:112,247,051...112,275,080

Supt6h

SPT6 homolog, histone chaperone and transcription elongation factor

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780

Tead4

TEA domain transcription factor 4

acts_upstream_of_or_within

MGI:3763362 (PMID:18804437)

PMID:18804437

NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323

Tjp1

tight junction protein 1

acts_upstream_of_or_within

(PMID:18423437)

PMID:18423437

NCBI chr 1:118,849,838...119,094,492
Ensembl chr 1:118,849,838...119,094,432

Tm4sf1

transmembrane 4 L six family member 1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 2:141,456,950...141,466,146
Ensembl chr 2:141,453,310...141,466,146

Txnrd3

thioredoxin reductase 3

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 4:122,072,548...122,112,493
Ensembl chr 4:122,072,548...122,112,491

Uspl1

ubiquitin specific peptidase like 1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr12:5,823,460...5,850,470
Ensembl chr12:5,823,359...5,850,366

Wdr74

WD repeat domain 74

acts_upstream_of_or_within

(PMID:21799883), (PMID:27869233)

PMID:21799883 PMID:27869233

NCBI chr 1:205,631,769...205,636,558
Ensembl chr 1:205,631,824...205,636,563

Zp3

zona pellucida glycoprotein 3

involved_in

IEA
ISS
ISO

GO_REF:0000107
GO_REF:0000024
(MGI:4943828|PMID:20382503)

Ensembl
UniProt
RGD

PMID:20382503

GO_REF:0000024 GO_REF:0000107 MGI:4943828

NCBI chr12:20,690,547...20,697,513
Ensembl chr12:20,690,547...20,697,513

blastocyst growth

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CTR9 homolog, Paf1/RNA polymerase II complex component

acts_upstream_of_or_within

MGI:101893 (PMID:24036311)

NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303

Ints1

integrator complex subunit 1

acts_upstream_of_or_within

MGI:3663683 (PMID:17544522)

PMID:17544522

NCBI chr12:14,861,312...14,886,048
Ensembl chr12:14,861,318...14,886,037

Nbn

nibrin

involved_in

IEA
ISO
ISS

GO_REF:0000107
(MGI:2680772|PMID:14612522)
GO_REF:0000024

Ensembl
RGD
UniProt

PMID:14612522

GO_REF:0000024 GO_REF:0000107 MGI:2680772

NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150

POU class 5 homeobox 1

acts_upstream_of_or_within

MGI:109345 (PMID:24036311)

NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891

Rad51b

RAD51 paralog B

acts_upstream_of_or_within

MGI:3621480 (PMID:10567591)

PMID:10567591

NCBI chr 6:98,096,525...98,640,988
Ensembl chr 6:98,098,868...98,640,979

Rtf1

Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)

acts_upstream_of_or_within

(PMID:24036311)

NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970

Smarca4

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

acts_upstream_of_or_within

MGI:2386105 (PMID:11163203)

PMID:11163203

NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975

Ubtfl1

upstream binding transcription factor like 1

acts_upstream_of_or_within

(PMID:19915186)

PMID:19915186

NCBI chr 8:15,511,217...15,512,404
Ensembl chr 8:16,073,983...16,075,170

Zfp830

zinc finger protein 830

acts_upstream_of_or_within

MGI:3583779 (PMID:15988037)

PMID:15988037

NCBI chr10:67,701,340...67,702,804
Ensembl chr10:67,701,073...67,704,523

blastocyst hatching

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Akap3

A-kinase anchoring protein 3

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 4:159,688,049...159,714,067
Ensembl chr 4:159,699,289...159,713,903

Ankrd7

ankyrin repeat domain 7

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 4:47,312,270...47,336,754
Ensembl chr 4:47,318,420...47,336,753

Arhgdig

Rho GDP dissociation inhibitor gamma

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr10:15,219,049...15,221,257
Ensembl chr10:15,219,049...15,221,213

Asf1b

anti-silencing function 1B histone chaperone

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr19:24,181,024...24,195,604
Ensembl chr19:24,181,028...24,195,549

Bcor

BCL6 co-repressor

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr X:10,609,756...10,729,613
Ensembl chr X:10,687,732...10,729,613

C9h6orf141

similar to human chromosome 6 open reading frame 141

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 9:20,024,916...20,029,094
Ensembl chr 9:20,024,916...20,029,094

Ccdc24

coiled-coil domain containing 24

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 5:131,398,766...131,412,395
Ensembl chr 5:131,408,143...131,412,029

Ccdc62

coiled-coil domain containing 62

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr12:32,623,170...32,659,912
Ensembl chr12:32,623,170...32,660,017

Cmtm3

CKLF-like MARVEL transmembrane domain containing 3

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr19:622,563...630,721
Ensembl chr19:604,458...629,790

Coprs

coordinator of PRMT5 and differentiation stimulator

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr16:75,721,264...75,726,375
Ensembl chr16:75,720,061...75,726,375

CTR9 homolog, Paf1/RNA polymerase II complex component

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303

Fbll1

fibrillarin-like 1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr10:20,258,656...20,260,299
Ensembl chr10:20,258,656...20,260,299

Grn

granulin precursor

acts_upstream_of_or_within

(PMID:15901638)

PMID:15901638

NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775

Hcfc1

host cell factor C1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr X:151,687,779...151,712,688
Ensembl chr X:151,687,779...151,712,638

Hs3st6

heparan sulfate-glucosamine 3-sulfotransferase 6

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr10:13,781,999...13,788,133
Ensembl chr10:13,781,993...13,788,133

Lpar6

lysophosphatidic acid receptor 6

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr15:48,416,548...48,418,357
Ensembl chr15:48,416,544...48,422,331

Ndufa2

NADH:ubiquinone oxidoreductase subunit A2

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr18:28,355,774...28,357,863
Ensembl chr18:28,355,774...28,358,076

Necab1

N-terminal EF-hand calcium binding protein 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:27869233)

GO_REF:0000107

NCBI chr 5:28,357,859...28,578,642
Ensembl chr 5:28,357,859...28,578,642
Ensembl chr 5:28,357,859...28,578,642

Pemt

phosphatidylethanolamine N-methyltransferase

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:27869233)

GO_REF:0000107

NCBI chr10:44,775,910...44,849,990
Ensembl chr10:44,775,911...44,850,013

Phf6

PHD finger protein 6

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr X:132,656,658...132,699,720
Ensembl chr X:132,656,672...132,699,127

Plpp4

phospholipid phosphatase 4

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 1:183,829,794...183,959,319
Ensembl chr 1:183,830,409...183,959,319

Ppp4r4

protein phosphatase 4, regulatory subunit 4

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 6:122,663,172...122,753,988
Ensembl chr 6:122,663,344...122,753,384

Prss29

serine protease 29

acts_upstream_of_or_within

MGI:2149951 (PMID:17156484)

PMID:17156484

NCBI chr10:14,337,315...14,341,038
Ensembl chr10:14,339,036...14,341,038

Rbbp8

RB binding protein 8, endonuclease

acts_upstream_of_or_within

MGI:3577029 (PMID:15831459)

PMID:15831459

NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846

Slc25a34

solute carrier family 25, member 34

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 5:153,932,081...153,936,854

Slc35e2b

solute carrier family 35, member E2B

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 5:166,185,166...166,211,055
Ensembl chr 5:166,185,166...166,207,021

Smarca4

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

acts_upstream_of_or_within

MGI:2386105 (PMID:11163203)

PMID:11163203

NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975

Smarcb1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

acts_upstream_of_or_within

MGI:2387974|MGI:2388033 (PMID:11263494), (PMID:11313485)

PMID:11263494 PMID:11313485

NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620

Smim14

small integral membrane protein 14

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr14:42,783,361...42,829,762
Ensembl chr14:42,783,332...42,829,760

St8sia6

ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr17:76,740,755...76,884,178
Ensembl chr17:76,745,224...76,884,299

Stmn3

stathmin 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:27869233)

GO_REF:0000107

NCBI chr 3:168,416,810...168,424,946
Ensembl chr 3:168,416,810...168,425,056

Suds3

SDS3 homolog, SIN3A corepressor complex component

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr12:39,477,181...39,499,633
Ensembl chr12:39,477,568...39,499,628

Suv39h1

SUV39H1 histone lysine methyltransferase

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr X:14,421,028...14,433,993
Ensembl chr X:14,421,109...14,433,982

Suv39h1-ps1

SUV39H1 histone lysine methyltransferase, pseudogene 1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr X:141,792,589...141,795,257

Tbl1xr1

TBL1X/Y related 1

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 2:104,788,950...104,929,055
Ensembl chr 2:104,801,721...104,929,055

Ube2a

ubiquitin-conjugating enzyme E2A

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr X:116,114,339...116,125,076
Ensembl chr X:116,113,875...116,125,070

Zbed6

zinc finger, BED-type containing 6

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr13:45,107,253...45,113,524
Ensembl chr13:45,071,718...45,114,009

Zfp14

ZFP14 zinc finger protein

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 1:85,268,649...85,286,125
Ensembl chr 1:85,268,643...85,285,759

Zfp420

zinc finger protein 420

acts_upstream_of_or_within

(PMID:27869233)

NCBI chr 1:85,092,810...85,143,682
Ensembl chr 1:85,093,085...85,106,693
Ensembl chr 1:85,093,085...85,106,693

branching involved in labyrinthine layer morphogenesis

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Adm

adrenomedullin

acts_upstream_of_or_within

MGI:2176598 (PMID:16981008)

PMID:16981008

NCBI chr 1:164,745,484...164,747,655
Ensembl chr 1:164,745,466...164,747,654

Fgfr2

fibroblast growth factor receptor 2

acts_upstream_of_or_within

MGI:2153790 (PMID:9435295)

PMID:9435295

NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626

Fzd5

frizzled class receptor 5

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3583769 (PMID:23610556)

PMID:23610556

GO_REF:0000107

NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457

Gcm1

glial cells missing transcription factor 1

acts_upstream_of_or_within

MGI:2183479 (PMID:10888880)

PMID:10888880

NCBI chr 8:78,925,687...78,938,924
Ensembl chr 8:78,925,687...78,938,924

Grb2

growth factor receptor bound protein 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2677457 (PMID:11369229)

PMID:11369229

GO_REF:0000107

NCBI chr10:100,881,404...100,949,193
Ensembl chr10:100,869,718...100,949,309

Il10

interleukin 10

acts_upstream_of_or_within

MGI:1857199 (PMID:12842419)

PMID:12842419

NCBI chr13:42,472,625...42,477,308
Ensembl chr13:42,472,839...42,477,313

Llgl2

LLGL scribble cell polarity complex component 2

acts_upstream_of_or_within

MGI:4331862 (PMID:21606200)

PMID:21606200

NCBI chr10:101,050,978...101,086,527
Ensembl chr10:101,051,408...101,086,525

Rspo3

R-spondin 3

acts_upstream_of_or_within

MGI:3695687 (PMID:16963017)

PMID:16963017

NCBI chr 1:28,283,914...28,368,661
Ensembl chr 1:28,283,914...28,367,061

Socs3

suppressor of cytokine signaling 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2180861 (PMID:11481489)

PMID:11481489

GO_REF:0000107

NCBI chr10:103,193,909...103,197,322
Ensembl chr10:103,193,537...103,197,787

Spint1

serine peptidase inhibitor, Kunitz type 1

acts_upstream_of_or_within

MGI:3709554 (PMID:17174946)

PMID:17174946

NCBI chr 3:106,231,082...106,244,121
Ensembl chr 3:106,231,444...106,244,119

transmembrane p24 trafficking protein 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4456438 (PMID:30236446)

PMID:30236446

GO_REF:0000107

NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903

cell differentiation involved in embryonic placenta development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Eomes

eomesodermin

involved_in

(MGI:1354065|PMID:10716450)

PMID:10716450

MGI:1354065

NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316

Gcm1

glial cells missing transcription factor 1

involved_in
acts_upstream_of_or_within

IBA
ISO

GO_REF:0000033
MGI:2183479 (PMID:10888880)

GO_Central
RGD

PMID:10888880

GO_REF:0000033

NCBI chr 8:78,925,687...78,938,924
Ensembl chr 8:78,925,687...78,938,924

Krt19

keratin 19

acts_upstream_of_or_within

MGI:96705 (PMID:11062258)

PMID:11062258

NCBI chr10:85,075,835...85,080,552
Ensembl chr10:85,066,802...85,171,799

Krt8

keratin 8

acts_upstream_of_or_within

MGI:96693 (PMID:11062258)

PMID:11062258

NCBI chr 7:133,124,203...133,131,656
Ensembl chr 7:133,124,203...133,131,728

Stk3

serine/threonine kinase 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1929004 (PMID:19786569)

PMID:19786569

GO_REF:0000107

NCBI chr 7:66,053,209...66,323,292
Ensembl chr 7:66,052,345...66,323,233

Stk4

serine/threonine kinase 4

acts_upstream_of_or_within

MGI:1928487 (PMID:19786569)

PMID:19786569

NCBI chr 3:152,745,958...152,827,747
Ensembl chr 3:152,745,681...152,827,744

chorio-allantoic fusion

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Bmp5

bone morphogenetic protein 5

involved_in

UniProtKB:P23359 (MGI:1332253|PMID:10079236)

PMID:10079236

MGI:1332253

NCBI chr 8:76,517,164...76,639,925
Ensembl chr 8:76,517,164...76,639,925

Bmp7

bone morphogenetic protein 7

involved_in

UniProtKB:P49003 (MGI:1332253|PMID:10079236)

PMID:10079236

MGI:1332253

NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788

Ccn1

cellular communication network factor 1

acts_upstream_of_or_within

MGI:2446577 (PMID:12446788)

PMID:12446788

NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484

Dnajb6

DnaJ heat shock protein family (Hsp40) member B6

acts_upstream_of_or_within

MGI:2151092 (PMID:10021343)

PMID:10021343

NCBI chr 4:5,452,683...5,556,679
Ensembl chr 4:5,452,683...5,556,659

Erf

Ets2 repressor factor

acts_upstream_of_or_within

MGI:3719472 (PMID:17502352)

PMID:17502352

NCBI chr 1:80,829,935...80,838,388
Ensembl chr 1:80,829,935...80,838,388

Itga4

integrin subunit alpha 4

acts_upstream_of_or_within

MGI:1857206 (PMID:7539359)

PMID:7539359

NCBI chr 3:64,162,764...64,235,010
Ensembl chr 3:64,163,085...64,233,715

Lef1

lymphoid enhancer binding factor 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:98504 (PMID:10090727)

PMID:10090727

GO_REF:0000107

NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794

Vcam1

vascular cell adhesion molecule 1

acts_upstream_of_or_within

MGI:1857452|MGI:2153830 (PMID:7530222), (PMID:7539357)

PMID:7530222 PMID:7539357

NCBI chr 2:204,038,120...204,057,852
Ensembl chr 2:204,038,114...204,057,958

Wnt7b

Wnt family member 7B

acts_upstream_of_or_within

MGI:2387443 (PMID:11543617)

PMID:11543617

NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581

Zfp36l1

zinc finger protein 36, C3H type-like 1

acts_upstream_of_or_within

MGI:3050540 (PMID:15226444)

PMID:15226444

NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748

embryonic placenta development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Arnt

aryl hydrocarbon receptor nuclear translocator

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857680 (PMID:16287860)

PMID:16287860

GO_REF:0000107

NCBI chr 2:182,997,731...183,056,584
Ensembl chr 2:182,997,736...183,056,580

Bptf

bromodomain PHD finger transcription factor

acts_upstream_of_or_within

MGI:3823037 (PMID:18794365)

PMID:18794365

NCBI chr10:91,980,279...92,082,731
Ensembl chr10:91,982,758...92,082,769

Cebpa

CCAAT/enhancer binding protein alpha

acts_upstream_of_or_within

MGI:88373 (PMID:15509779)

PMID:15509779

NCBI chr 1:87,759,631...87,762,303
Ensembl chr 1:87,759,433...87,762,412

Cebpb

CCAAT/enhancer binding protein beta

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:99480 (PMID:15509779)

PMID:15509779

GO_REF:0000107

NCBI chr 3:156,398,035...156,399,466
Ensembl chr 3:156,397,052...156,399,473

Cited2

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2

acts_upstream_of_or_within

MGI:2176158 (PMID:16579983)

PMID:16579983

NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897

Csf2

colony stimulating factor 2

acts_upstream_of_or_within

MGI:1930997 (PMID:19228596)

PMID:19228596

NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199

Egfr

epidermal growth factor receptor

acts_upstream_of_or_within

MGI:1856402 (PMID:7618084)

PMID:7618084

NCBI chr14:91,176,979...91,349,722
Ensembl chr14:91,177,067...91,344,382

Epas1

endothelial PAS domain protein 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:106918 (PMID:16287860)

PMID:16287860

GO_REF:0000107

NCBI chr 6:7,790,236...7,871,717
Ensembl chr 6:7,790,647...7,871,228

estrogen-related receptor beta

acts_upstream_of_or_within

MGI:1857422 (PMID:9285590)

NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791

Foxd3

forkhead box D3

acts_upstream_of_or_within

MGI:2388719 (PMID:16039639)

PMID:16039639

NCBI chr 5:114,335,084...114,337,450
Ensembl chr 5:114,335,408...114,336,817

Gata2

GATA binding protein 2

acts_upstream_of_or_within

MGI:1857743 (PMID:9043071)

PMID:9043071

NCBI chr 4:120,654,205...120,667,763
Ensembl chr 4:120,658,986...120,667,761

Hectd1

HECT domain E3 ubiquitin protein ligase 1

acts_upstream_of_or_within

MGI:2137552|MGI:3706565 (PMID:24855001)

PMID:24855001

NCBI chr 6:69,181,429...69,268,045
Ensembl chr 6:69,181,436...69,268,053

Hif1a

hypoxia inducible factor 1 subunit alpha

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:109169|MGI:2179429 (PMID:16287860)

PMID:16287860

GO_REF:0000107

NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261

Hsf1

heat shock transcription factor 1

acts_upstream_of_or_within

MGI:2155444 (PMID:10545106)

PMID:10545106

NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011

insulin-like growth factor 2

involved_in

GO_REF:0000024
(MGI:2181513|PMID:12087403)

PMID:12087403

GO_REF:0000024 MGI:2181513

NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018

Med1

mediator complex subunit 1

acts_upstream_of_or_within

MGI:2684189 (PMID:14500757)

PMID:14500757

NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299

Mir127

microRNA 127

acts_upstream_of_or_within

MGI:5789789 (PMID:26138477)

PMID:26138477

NCBI chr 6:128,546,215...128,546,311
Ensembl chr 6:128,546,215...128,546,311

nodal growth differentiation factor

acts_upstream_of_or_within

MGI:1856970|MGI:2158730 (PMID:11456449)

PMID:11456449

NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837

Pdgfb

platelet derived growth factor subunit B

involved_in

GO_REF:0000024
(MGI:3039044|PMID:15084468)

PMID:15084468

GO_REF:0000024 MGI:3039044

NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984

Pkd1

polycystin 1, transient receptor potential channel interacting

involved_in

(MGI:4836293|PMID:20862291)

PMID:20862291

MGI:4836293

NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128

Pkd2

polycystin 2, transient receptor potential cation channel

involved_in
acts_upstream_of_or_within

(MGI:4836293|PMID:20862291)
MGI:1860840 (PMID:16301212)

PMID:16301212 PMID:20862291

MGI:4836293

NCBI chr14:5,237,135...5,280,455
Ensembl chr14:5,237,135...5,280,825

Prdm1

PR/SET domain 1

acts_upstream_of_or_within

MGI:3605483 (PMID:15750184)

PMID:15750184

NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488

Rtl1

retrotransposon-like 1

acts_upstream_of_or_within

MGI:3776873 (PMID:26138477), (PMID:28111885)

PMID:26138477 PMID:28111885

NCBI chr 6:128,543,904...128,549,384
Ensembl chr 6:128,543,939...128,549,182

Slc8a1

solute carrier family 8 member A1

acts_upstream_of_or_within

MGI:4849923 (PMID:21302256)

PMID:21302256

NCBI chr 6:13,194,609...13,547,369
Ensembl chr 6:13,194,662...13,535,628

Sp1

Sp1 transcription factor

acts_upstream_of_or_within

MGI:1277166 (PMID:17584888)

NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961

Sp3

Sp3 transcription factor

acts_upstream_of_or_within

MGI:98372 (PMID:17584888)

NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342

Spint1

serine peptidase inhibitor, Kunitz type 1

acts_upstream_of_or_within

MGI:3581891 (PMID:15964823)

PMID:15964823

NCBI chr 3:106,231,082...106,244,121
Ensembl chr 3:106,231,444...106,244,119

Taf10

TATA-box binding protein associated factor 10

involved_in

MGI:3606185 (PMID:28893950)

PMID:28893950

NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376

Tfeb

transcription factor EB

involved_in

(MGI:1306865|PMID:9806910)

PMID:9806910

MGI:1306865

NCBI chr 9:13,198,890...13,254,726
Ensembl chr 9:13,198,891...13,254,714

transmembrane p24 trafficking protein 2

acts_upstream_of_or_within

MGI:4456438 (PMID:20178780)

PMID:20178780

NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903

Ttpa

alpha tocopherol transfer protein

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2386172 (PMID:16014812)

PMID:16014812

GO_REF:0000107

NCBI chr 5:33,497,537...33,518,936
Ensembl chr 5:33,497,137...33,518,073

embryonic placenta morphogenesis

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cdkn1c

cyclin-dependent kinase inhibitor 1C

acts_upstream_of_or_within

MGI:1933758|MGI:3840687 (PMID:19276117)

PMID:19276117

NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048

insulin-like growth factor 2

involved_in

(MGI:5908476|PMID:28522536)

PMID:28522536

NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018

Setd2

SET domain containing 2, histone lysine methyltransferase

acts_upstream_of_or_within

MGI:4437211 (PMID:20133625)

PMID:20133625

NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489

Trim28

tripartite motif-containing 28

acts_upstream_of_or_within

MGI:1928907 (PMID:22110054)

PMID:22110054

NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380

Vcam1

vascular cell adhesion molecule 1

acts_upstream_of_or_within

MGI:2153830 (PMID:7530222)

PMID:7530222

NCBI chr 2:204,038,120...204,057,852
Ensembl chr 2:204,038,114...204,057,958

Wnt7b

Wnt family member 7B

acts_upstream_of_or_within

MGI:2387443 (PMID:11543617)

PMID:11543617

NCBI chr 7:116,634,817...116,679,459
Ensembl chr 7:116,634,814...116,679,581

Zfp568

zinc finger protein 568

involved_in
acts_upstream_of_or_within

(MGI:5908476|PMID:28522536)
MGI:3578538 (PMID:21094155)

PMID:21094155 PMID:28522536

NCBI chr 1:85,206,643...85,257,759
Ensembl chr 1:85,207,579...85,257,505

epithelial cell morphogenesis involved in placental branching

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Grhl2

grainyhead-like transcription factor 2

acts_upstream_of_or_within

MGI:4340678 (PMID:25758223)

PMID:25758223

NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258

Spint2

serine peptidase inhibitor, Kunitz type, 2

acts_upstream_of_or_within

MGI:1338881|MGI:2156187 (PMID:19592578)

PMID:19592578

NCBI chr 1:84,558,159...84,580,616
Ensembl chr 1:84,558,166...84,580,616

St14

ST14 transmembrane serine protease matriptase

acts_upstream_of_or_within

MGI:1338031 (PMID:19592578)

PMID:19592578

NCBI chr 8:29,540,805...29,581,704
Ensembl chr 8:29,540,811...29,581,517

glycogen cell differentiation involved in embryonic placenta development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Akt1

AKT serine/threonine kinase 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2675202 (PMID:12783884)

PMID:12783884

GO_REF:0000107

NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921

inner cell mass cell differentiation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

CTR9 homolog, Paf1/RNA polymerase II complex component

acts_upstream_of_or_within

(PMID:24036311)

NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303

Hnf1b

HNF1 homeobox B

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857856 (PMID:10518496)

PMID:10518496

GO_REF:0000107

NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888

Nle1

notchless homolog 1

acts_upstream_of_or_within

MGI:3624778 (PMID:16611995)

PMID:16611995

NCBI chr10:67,834,059...67,844,771
Ensembl chr10:67,834,062...67,842,658

Tet1

tet methylcytosine dioxygenase 1

involved_in
acts_upstream_of_or_within

(MGI:3844762|PMID:19372391)
(PMID:20639862), (PMID:21295276)

PMID:19372391 PMID:20639862 PMID:21295276

MGI:3844762

NCBI chr20:25,761,042...25,840,926
Ensembl chr20:25,768,120...25,833,052

inner cell mass cell fate commitment

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Lats1

large tumor suppressor kinase 1

acts_upstream_of_or_within

MGI:1354386 (PMID:23824537)

NCBI chr 1:2,160,411...2,193,640
Ensembl chr 1:2,160,411...2,193,640

Lats2

large tumor suppressor kinase 2

acts_upstream_of_or_within

MGI:1333883 (PMID:23824537)

NCBI chr15:31,825,068...31,877,193
Ensembl chr15:31,825,092...31,877,220

Prdm14

PR/SET domain 14

acts_upstream_of_or_within

(PMID:24183668)

PMID:24183668

NCBI chr 5:6,082,163...6,092,712
Ensembl chr 5:6,082,442...6,092,712

inner cell mass cell proliferation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Brca2

BRCA2, DNA repair associated

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1930617 (PMID:9171369)

PMID:9171369

GO_REF:0000107

NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567

Brd4

bromodomain containing 4

acts_upstream_of_or_within

MGI:2674141 (PMID:11997514)

PMID:11997514

NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539

Chek1

checkpoint kinase 1

acts_upstream_of_or_within

MGI:1928818 (PMID:10859163)

PMID:10859163

NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009

Cops2

COP9 signalosome subunit 2

acts_upstream_of_or_within

MGI:2678281 (PMID:12972599)

PMID:12972599

NCBI chr 3:113,084,174...113,110,090
Ensembl chr 3:113,084,176...113,109,947

Dmbt1

deleted in malignant brain tumors 1

acts_upstream_of_or_within

(PMID:15452149)

PMID:15452149

NCBI chr 1:185,617,469...185,696,476
Ensembl chr 1:185,617,294...185,696,478

Gins1

GINS complex subunit 1

acts_upstream_of_or_within

MGI:3706309 (PMID:16287864)

PMID:16287864

NCBI chr 3:139,724,513...139,745,930
Ensembl chr 3:139,724,490...139,745,936

Gins4

GINS complex subunit 4

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:5575557 (PMID:24244394)

PMID:24244394

GO_REF:0000107

NCBI chr16:68,787,572...68,799,938
Ensembl chr16:68,767,339...68,802,273

Ints1

integrator complex subunit 1

acts_upstream_of_or_within

MGI:3663683 (PMID:17544522)

PMID:17544522

NCBI chr12:14,861,312...14,886,048
Ensembl chr12:14,861,318...14,886,037

Ncapg2

non-SMC condensin II complex, subunit G2

acts_upstream_of_or_within

MGI:3039486 (PMID:14729962)

PMID:14729962

NCBI chr 6:137,342,449...137,418,083
Ensembl chr 6:137,342,943...137,415,159

Ndel1

nudE neurodevelopment protein 1-like 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3589467 (PMID:16107726)

PMID:16107726

GO_REF:0000107

NCBI chr10:53,505,628...53,582,025
Ensembl chr10:53,516,491...53,570,907

Palb2

partner and localizer of BRCA2

acts_upstream_of_or_within

MGI:3801303 (PMID:20484223)

PMID:20484223

NCBI chr 1:176,665,076...176,689,053
Ensembl chr 1:176,665,076...176,688,990

Pelo

pelota mRNA surveillance and ribosome rescue factor

acts_upstream_of_or_within

MGI:2450933 (PMID:12556505)

PMID:12556505

NCBI chr 2:46,797,853...46,799,621
Ensembl chr 2:46,797,853...46,799,746

Sall4

spalt-like transcription factor 4

acts_upstream_of_or_within

MGI:3699175 (PMID:16790473)

PMID:16790473

NCBI chr 3:157,474,067...157,491,055
Ensembl chr 3:157,474,642...157,490,822

Sbds

Sbds, ribosome maturation factor

acts_upstream_of_or_within

MGI:3664792 (PMID:16914746)

PMID:16914746

NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649

Setdb1

SET domain bifurcated histone lysine methyltransferase 1

acts_upstream_of_or_within

MGI:3040431 (PMID:14993285)

PMID:14993285

NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506

Taf8

TATA-box binding protein associated factor 8

acts_upstream_of_or_within

MGI:3033758 (PMID:11076765)

PMID:11076765

NCBI chr 9:13,491,892...13,511,713
Ensembl chr 9:13,491,937...13,511,717

Zpr1

ZPR1 zinc finger

involved_in

(MGI:3575865|PMID:15767679)

PMID:15767679

MGI:3575865

NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719

inner cell mass cellular morphogenesis

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Lats1

large tumor suppressor kinase 1

acts_upstream_of_or_within

MGI:1354386 (PMID:23824537)

NCBI chr 1:2,160,411...2,193,640
Ensembl chr 1:2,160,411...2,193,640

Lats2

large tumor suppressor kinase 2

acts_upstream_of_or_within

MGI:1333883 (PMID:23824537)

NCBI chr15:31,825,068...31,877,193
Ensembl chr15:31,825,092...31,877,220

Sox17

SRY-box transcription factor 17

acts_upstream_of_or_within

MGI:3717121 (PMID:21146513)

PMID:21146513

NCBI chr 5:15,016,660...15,022,228
Ensembl chr 5:15,016,731...15,022,228

labyrinthine layer blood vessel development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Akt1

AKT serine/threonine kinase 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2675202 (PMID:12783884)

PMID:12783884

GO_REF:0000107

NCBI chr 6:131,713,716...131,735,319
Ensembl chr 6:131,713,720...131,733,921

Ccn1

cellular communication network factor 1

acts_upstream_of_or_within

MGI:2446577 (PMID:12446788)

PMID:12446788

NCBI chr 2:234,562,410...234,565,370
Ensembl chr 2:234,562,408...234,565,484

Esx1

ESX homeobox 1

acts_upstream_of_or_within

MGI:2153820 (PMID:9806555)

PMID:9806555

NCBI chr X:100,449,298...100,454,452

Fbxw8

F-box and WD repeat domain containing 8

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3665136 (PMID:16880526)

PMID:16880526

GO_REF:0000107

NCBI chr12:38,426,466...38,517,076
Ensembl chr12:38,426,444...38,516,424

Fzd5

frizzled class receptor 5

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2177951 (PMID:11092808)

PMID:11092808

GO_REF:0000107

NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457

Ggnbp2

gametogenetin binding protein 2

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:4072637 (PMID:26764350)

PMID:26764350

GO_REF:0000107

NCBI chr10:69,711,527...69,743,134
Ensembl chr10:69,711,532...69,743,365

Hes1

hes family bHLH transcription factor 1

involved_in

GO_REF:0000107
(MGI:4453944|PMID:20122914)

PMID:20122914

GO_REF:0000107 MGI:4453944

NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192

Hey1

hes-related family bHLH transcription factor with YRPW motif 1

involved_in

UniProtKB:Q9QUS4 (MGI:3040159|PMID:15107403)

PMID:15107403

MGI:3040159

NCBI chr 2:93,096,605...93,100,316
Ensembl chr 2:93,095,498...93,100,312

Hey2

hes-related family bHLH transcription factor with YRPW motif 2

involved_in

UniProtKB:Q9WV93 (MGI:3040159|PMID:15107403)

PMID:15107403

MGI:3040159

NCBI chr 1:26,822,131...26,832,218
Ensembl chr 1:26,822,131...26,832,218

Hs6st1

heparan sulfate 6-O-sulfotransferase 1

acts_upstream_of_or_within

MGI:3715259 (PMID:17405882)

PMID:17405882

NCBI chr 9:38,283,502...38,322,684
Ensembl chr 9:38,282,395...38,322,683

Junb

JunB proto-oncogene, AP-1 transcription factor subunit

acts_upstream_of_or_within

MGI:2153821 (PMID:10022836)

PMID:10022836

NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035

Llgl2

LLGL scribble cell polarity complex component 2

acts_upstream_of_or_within

MGI:4331862 (PMID:21606200)

PMID:21606200

NCBI chr10:101,050,978...101,086,527
Ensembl chr10:101,051,408...101,086,525

Mapk1

mitogen activated protein kinase 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3055889 (PMID:14622137)

PMID:14622137

GO_REF:0000107

NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616

Ncoa6

nuclear receptor coactivator 6

acts_upstream_of_or_within

MGI:2445463|MGI:2450859 (PMID:12368298), (PMID:12556486)

PMID:12368298 PMID:12556486

NCBI chr 3:143,890,896...143,961,916
Ensembl chr 3:143,890,896...143,952,268

Nfe2

nuclear factor, erythroid 2

acts_upstream_of_or_within

MGI:1857224 (PMID:21558372)

PMID:21558372

NCBI chr 7:134,382,758...134,395,364
Ensembl chr 7:134,382,761...134,390,108

Nsdhl

NAD(P) dependent steroid dehydrogenase-like

acts_upstream_of_or_within

MGI:1862021 (PMID:17028112)

PMID:17028112

NCBI chr X:150,775,034...150,807,161
Ensembl chr X:150,775,080...150,807,142

Ovol2

ovo-like zinc finger 2

acts_upstream_of_or_within

MGI:3777011 (PMID:17573777)

PMID:17573777

NCBI chr 3:131,677,391...131,707,123
Ensembl chr 3:131,677,391...131,708,359

Plcd1

phospholipase C, delta 1

acts_upstream_of_or_within

MGI:107451 (PMID:16314520)

PMID:16314520

NCBI chr 8:118,795,196...118,818,186
Ensembl chr 8:118,795,201...118,818,186

Plcd3

phospholipase C, delta 3

acts_upstream_of_or_within

MGI:97614 (PMID:16314520)

PMID:16314520

NCBI chr10:88,026,707...88,048,080
Ensembl chr10:88,026,740...88,048,296

Plg

plasminogen

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857291 (PMID:12900459)

PMID:12900459

GO_REF:0000107

NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786

Rbpj

recombination signal binding protein for immunoglobulin kappa J region

involved_in

(MGI:3056004|PMID:15466160)

PMID:15466160

MGI:3056004

NCBI chr14:57,338,493...57,523,330
Ensembl chr14:57,338,507...57,523,353

Syde1

synapse defective Rho GTPase homolog 1

acts_upstream_of_or_within

MGI:5905625 (PMID:27917469)

PMID:27917469

NCBI chr 7:11,032,931...11,038,917
Ensembl chr 7:11,032,898...11,039,869

transmembrane p24 trafficking protein 2

involved_in

(MGI:4453264|PMID:20178780)
GO_REF:0000107

PMID:20178780

GO_REF:0000107 MGI:4453264

NCBI chr12:32,052,542...32,061,628
Ensembl chr12:32,052,543...32,071,903

Vash1

vasohibin 1

acts_upstream_of_or_within

MGI:3846783 (PMID:25184477)

PMID:25184477

NCBI chr 6:106,330,374...106,345,740
Ensembl chr 6:106,329,123...106,345,726

Vash2

vasohibin 2

acts_upstream_of_or_within

MGI:3846784 (PMID:25184477)

PMID:25184477

NCBI chr13:102,529,718...102,561,204
Ensembl chr13:102,529,719...102,560,391

Wnt2

Wnt family member 2

acts_upstream_of_or_within

MGI:2177935 (PMID:8951051)

PMID:8951051

NCBI chr 4:46,328,408...46,374,673
Ensembl chr 4:46,333,998...46,374,402

labyrinthine layer development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Birc6

baculoviral IAP repeat-containing 6

acts_upstream_of_or_within

MGI:3512417 (PMID:15485903)

PMID:15485903

NCBI chr 6:20,722,922...20,916,396
Ensembl chr 6:20,722,922...20,916,434

Cdx2

caudal type homeo box 2

acts_upstream_of_or_within

MGI:88362 (PMID:19853565)

PMID:19853565

NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142

Cdx4

caudal type homeo box 4

acts_upstream_of_or_within

MGI:88361 (PMID:19853565)

PMID:19853565

NCBI chr X:68,326,874...68,335,461
Ensembl chr X:68,326,874...68,335,461

Cited1

Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1

acts_upstream_of_or_within

MGI:3028946 (PMID:14673158)

PMID:14673158

NCBI chr X:67,350,376...67,355,072
Ensembl chr X:67,350,373...67,355,162

Egln1

egl-9 family hypoxia-inducible factor 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3690045 (PMID:16966370)

PMID:16966370

GO_REF:0000107

NCBI chr19:52,867,900...52,907,308
Ensembl chr19:52,869,486...52,907,777

Ervfrd-1

endogenous retrovirus group FRD member 1, envelope

acts_upstream_of_or_within

MGI:3852417 (PMID:19564597)

PMID:19564597

NCBI chr12:22,151,211...22,158,264
Ensembl chr12:22,151,211...22,158,264

Gab1

GRB2-associated binding protein 1

acts_upstream_of_or_within

MGI:1926435 (PMID:10779359)

PMID:10779359

NCBI chr19:27,131,262...27,239,236
Ensembl chr19:27,131,262...27,239,236

Ggnbp2

gametogenetin binding protein 2

acts_upstream_of_or_within

MGI:4072637 (PMID:26764350)

PMID:26764350

NCBI chr10:69,711,527...69,743,134
Ensembl chr10:69,711,532...69,743,365

Map2k1

mitogen activated protein kinase kinase 1

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2178132 (PMID:10209122)

PMID:10209122

GO_REF:0000107

NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147

Mir127

microRNA 127

acts_upstream_of_or_within

MGI:5789789 (PMID:26138477)

PMID:26138477

NCBI chr 6:128,546,215...128,546,311
Ensembl chr 6:128,546,215...128,546,311

Pcdh12

protocadherin 12

acts_upstream_of_or_within

MGI:3512625 (PMID:18477666)

PMID:18477666

NCBI chr18:30,103,728...30,119,307
Ensembl chr18:30,103,728...30,119,307

Rtl1

retrotransposon-like 1

acts_upstream_of_or_within

MGI:3776873 (PMID:26138477), (PMID:28111885)

PMID:26138477 PMID:28111885

NCBI chr 6:128,543,904...128,549,384
Ensembl chr 6:128,543,939...128,549,182

Senp2

SUMO specific peptidase 2

acts_upstream_of_or_within

MGI:3832730 (PMID:19090619)

PMID:19090619

NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238

Syde1

synapse defective Rho GTPase homolog 1

acts_upstream_of_or_within

MGI:5905625 (PMID:27917469)

PMID:27917469

NCBI chr 7:11,032,931...11,038,917
Ensembl chr 7:11,032,898...11,039,869

Vash2

vasohibin 2

acts_upstream_of_or_within

MGI:3846784 (PMID:25184477)

PMID:25184477

NCBI chr13:102,529,718...102,561,204
Ensembl chr13:102,529,719...102,560,391

labyrinthine layer morphogenesis

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Esx1

ESX homeobox 1

acts_upstream_of_or_within

MGI:2153820 (PMID:9806555)

PMID:9806555

NCBI chr X:100,449,298...100,454,452

Gjb5

gap junction protein, beta 5

acts_upstream_of_or_within

MGI:3769388 (PMID:17961533)

PMID:17961533

NCBI chr 5:139,680,670...139,683,588
Ensembl chr 5:139,680,671...139,683,583

Ncoa1

nuclear receptor coactivator 1

acts_upstream_of_or_within

MGI:1276535 (PMID:20685850)

PMID:20685850

NCBI chr 6:27,232,609...27,507,992
Ensembl chr 6:27,232,611...27,475,664

Ncoa3

nuclear receptor coactivator 3

acts_upstream_of_or_within

MGI:1276523 (PMID:20685850)

PMID:20685850

NCBI chr 3:154,738,566...154,821,395
Ensembl chr 3:154,738,581...154,818,594

negative regulation of cell differentiation involved in embryonic placenta development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Elf5

E74 like ETS transcription factor 5

acts_upstream_of_or_within

(PMID:24859262)

PMID:24859262

NCBI chr 3:89,808,837...89,836,977
Ensembl chr 3:89,797,880...89,836,973

Snai1

snail family transcriptional repressor 1

acts_upstream_of_or_within

(PMID:9676199)

PMID:9676199

NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969

positive regulation of trophectodermal cell proliferation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Csf2

colony stimulating factor 2

involved_in

(PMID:16792532), (PMID:24520418)

PMID:16792532 PMID:24520418

NCBI chr10:38,386,945...38,388,926
Ensembl chr10:38,386,945...38,389,199

Grn

granulin precursor

acts_upstream_of_or_within

(PMID:15901638)

PMID:15901638

NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775

Igf1

insulin-like growth factor 1

involved_in

(PMID:24508636)
GO_REF:0000107

PMID:24508636

GO_REF:0000107

NCBI chr 7:22,282,895...22,361,972
Ensembl chr 7:22,282,930...22,359,296

regulation of blastocyst development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Agbl4

AGBL carboxypeptidase 4

acts_upstream_of_or_within

MGI:5788002 (PMID:29593216)

NCBI chr 5:125,254,963...126,534,367
Ensembl chr 5:125,254,956...126,534,367

Klf4

KLF transcription factor 4

acts_upstream_of_or_within

MGI:6392146 (PMID:29593216)

NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602

Ttll1

TTL family tubulin polyglutamylase complex subunit L1

acts_upstream_of_or_within

(PMID:29593216)

NCBI chr 7:114,619,509...114,648,850
Ensembl chr 7:114,619,508...114,648,761

Ttll4

tubulin tyrosine ligase like 4

acts_upstream_of_or_within

(PMID:29593216)

NCBI chr 9:76,221,659...76,258,219
Ensembl chr 9:76,221,796...76,251,301

regulation of cell differentiation involved in embryonic placenta development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Gcm1

glial cells missing transcription factor 1

involved_in

(PMID:19219068)

PMID:19219068

NCBI chr 8:78,925,687...78,938,924
Ensembl chr 8:78,925,687...78,938,924

Stk3

serine/threonine kinase 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1929004 (PMID:24595170)

PMID:24595170

GO_REF:0000107

NCBI chr 7:66,053,209...66,323,292
Ensembl chr 7:66,052,345...66,323,233

Stk4

serine/threonine kinase 4

acts_upstream_of_or_within

MGI:1928487 (PMID:24595170)

PMID:24595170

NCBI chr 3:152,745,958...152,827,747
Ensembl chr 3:152,745,681...152,827,744

regulation of spongiotrophoblast cell proliferation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Nrk

Nik related kinase

acts_upstream_of_or_within

MGI:5292103 (PMID:21715335)

PMID:21715335

NCBI chr X:102,365,765...102,462,957
Ensembl chr X:102,365,765...102,459,657

Phlda2

pleckstrin homology-like domain, family A, member 2

acts_upstream_of_or_within

MGI:2181542 (PMID:26476147)

PMID:26476147

NCBI chr 1:198,696,897...198,699,292
Ensembl chr 1:198,696,897...198,697,836

spongiotrophoblast cell proliferation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

insulin-like growth factor 2

involved_in

(MGI:5424276|PMID:22562201)

PMID:22562201

MGI:5424276

NCBI chr 1:197,814,409...197,831,802
Ensembl chr 1:197,814,410...197,823,018

spongiotrophoblast differentiation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ascl2

achaete-scute family bHLH transcription factor 2

acts_upstream_of_or_within

MGI:2153832 (PMID:9331331)

PMID:9331331

NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406

Gjb5

gap junction protein, beta 5

acts_upstream_of_or_within

MGI:3769388 (PMID:17961533)

PMID:17961533

NCBI chr 5:139,680,670...139,683,588
Ensembl chr 5:139,680,671...139,683,583

Hectd1

HECT domain E3 ubiquitin protein ligase 1

acts_upstream_of_or_within

MGI:2137552 (PMID:24855001)

PMID:24855001

NCBI chr 6:69,181,429...69,268,045
Ensembl chr 6:69,181,436...69,268,053

Lif

LIF, interleukin 6 family cytokine

acts_upstream_of_or_within

MGI:1201791 (PMID:16258063)

PMID:16258063

NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482

Xist

X inactive specific transcript

acts_upstream_of_or_within

MGI:2445460 (PMID:22573614)

PMID:22573614

NCBI chr X:68,474,987...68,492,500

spongiotrophoblast layer development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Adm

adrenomedullin

acts_upstream_of_or_within

MGI:2176598 (PMID:16981008)

PMID:16981008

NCBI chr 1:164,745,484...164,747,655
Ensembl chr 1:164,745,466...164,747,654

Ascl2

achaete-scute family bHLH transcription factor 2

involved_in

(PMID:12917334)

PMID:12917334

NCBI chr 1:198,148,999...198,151,406
Ensembl chr 1:198,148,999...198,151,406

Birc6

baculoviral IAP repeat-containing 6

acts_upstream_of_or_within

MGI:3512417 (PMID:15485903)

PMID:15485903

NCBI chr 6:20,722,922...20,916,396
Ensembl chr 6:20,722,922...20,916,434

Cited1

Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1

acts_upstream_of_or_within

MGI:3028946 (PMID:14673158)

PMID:14673158

NCBI chr X:67,350,376...67,355,072
Ensembl chr X:67,350,373...67,355,162

Fbxw8

F-box and WD repeat domain containing 8

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3665136 (PMID:16880526)

PMID:16880526

GO_REF:0000107

NCBI chr12:38,426,466...38,517,076
Ensembl chr12:38,426,444...38,516,424

Senp2

SUMO specific peptidase 2

acts_upstream_of_or_within

MGI:3832730 (PMID:19090619)

PMID:19090619

NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238

Zfat

zinc finger and AT hook domain containing

acts_upstream_of_or_within

MGI:4829941 (PMID:20660741)

PMID:20660741

NCBI chr 7:99,886,954...100,054,288
Ensembl chr 7:99,886,954...100,054,274

Zfp36l1

zinc finger protein 36, C3H type-like 1

acts_upstream_of_or_within

MGI:3050540 (PMID:15226444)

PMID:15226444

NCBI chr 6:98,930,705...98,935,748
Ensembl chr 6:98,930,718...98,935,748

spongiotrophoblast layer developmental growth

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Plac1

placenta enriched 1

acts_upstream_of_or_within

MGI:3808477 (PMID:22729990)

PMID:22729990

NCBI chr X:132,821,347...132,955,143
Ensembl chr X:132,821,347...132,985,668

syncytiotrophoblast cell differentiation involved in labyrinthine layer development

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Dnajb6

DnaJ heat shock protein family (Hsp40) member B6

acts_upstream_of_or_within

MGI:2151092 (PMID:21972064)

PMID:21972064

NCBI chr 4:5,452,683...5,556,679
Ensembl chr 4:5,452,683...5,556,659

Fzd5

frizzled class receptor 5

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:3583769 (PMID:23610556)

PMID:23610556

GO_REF:0000107

NCBI chr 9:66,113,096...66,120,276
Ensembl chr 9:66,113,112...66,121,457

trophectodermal cell differentiation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ada

adenosine deaminase

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857117 (PMID:9272950)

PMID:9272950

GO_REF:0000107

NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088

Bysl

bystin-like

involved_in
acts_upstream_of_or_within

GO_REF:0000107
(PMID:17242206)

PMID:17242206

GO_REF:0000107

NCBI chr 9:13,382,806...13,392,557
Ensembl chr 9:13,382,557...13,394,339

Cdh1

cadherin 1

acts_upstream_of_or_within

MGI:3696711 (PMID:17138661)

PMID:17138661

NCBI chr19:34,492,371...34,561,775
Ensembl chr19:34,492,371...34,561,775

Cdx2

caudal type homeo box 2

acts_upstream_of
acts_upstream_of_or_within

(PMID:16325584)
MGI:1857928 (PMID:15788452), (PMID:16325584), (PMID:20404091), (PMID:25397698)

PMID:15788452 PMID:16325584 PMID:20404091 PMID:25397698

NCBI chr12:7,726,798...7,733,142
Ensembl chr12:7,726,798...7,733,142

Cited2

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2

acts_upstream_of_or_within

MGI:2176158 (PMID:16579983)

PMID:16579983

NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897

Cnot1

CCR4-NOT transcription complex, subunit 1

involved_in

(MGI:5487505|PMID:22367759)

PMID:22367759

MGI:5487505

NCBI chr19:9,255,190...9,346,574
Ensembl chr19:9,255,194...9,346,574

Cnot2

CCR4-NOT transcription complex, subunit 2

involved_in

(MGI:5487505|PMID:22367759)

PMID:22367759

MGI:5487505

NCBI chr 7:52,130,445...52,222,338
Ensembl chr 7:52,130,441...52,223,575

Cnot3

CCR4-NOT transcription complex, subunit 3

involved_in

(MGI:5487505|PMID:22367759)

PMID:22367759

MGI:5487505

NCBI chr 1:65,555,924...65,572,167
Ensembl chr 1:65,555,924...65,572,167

CTR9 homolog, Paf1/RNA polymerase II complex component

acts_upstream_of_or_within

(PMID:24036311)

NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303

Eomes

eomesodermin

acts_upstream_of_or_within

MGI:101893 (PMID:16325584)

PMID:16325584

NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316

Foxd3

forkhead box D3

acts_upstream_of_or_within

MGI:2388719 (PMID:16039639)

PMID:16039639

NCBI chr 5:114,335,084...114,337,450
Ensembl chr 5:114,335,408...114,336,817

heart and neural crest derivatives expressed 1

involved_in

(PMID:11802795)

PMID:11802795

NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213

Hopx

HOP homeobox

acts_upstream_of_or_within

(PMID:17576768)
MGI:2389233 (PMID:17576768)

PMID:17576768

NCBI chr14:31,055,912...31,082,909
Ensembl chr14:31,075,148...31,082,909

Junb

JunB proto-oncogene, AP-1 transcription factor subunit

acts_upstream_of_or_within

MGI:2153821 (PMID:10022836), (PMID:11456449)

PMID:10022836 PMID:11456449

NCBI chr19:23,176,265...23,178,049
Ensembl chr19:23,176,294...23,178,035

nodal growth differentiation factor

acts_upstream_of_or_within

(PMID:11456449)

PMID:11456449

NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837

POU class 5 homeobox 1

acts_upstream_of_or_within

MGI:1201683 (PMID:16325584)

PMID:16325584

NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891

Rbm46

RNA binding motif protein 46

acts_upstream_of_or_within

(PMID:25397698)

PMID:25397698

NCBI chr 2:168,198,324...168,242,011
Ensembl chr 2:168,198,463...168,242,011

Sox2

SRY-box transcription factor 2

acts_upstream_of

(PMID:17507372)

PMID:17507372

NCBI chr 2:117,536,929...117,539,340
Ensembl chr 2:117,536,929...117,539,338

Sp1

Sp1 transcription factor

acts_upstream_of_or_within

MGI:1277166 (PMID:17584888)

NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961

Sp3

Sp3 transcription factor

acts_upstream_of_or_within

MGI:98372 (PMID:17584888)

NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342

Srf

serum response factor

acts_upstream_of_or_within

(PMID:17576768)

PMID:17576768

NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733

Tfap2c

transcription factor AP-2 gamma

acts_upstream_of_or_within

MGI:3040993 (PMID:20404091)

PMID:20404091

NCBI chr 3:161,315,114...161,322,998
Ensembl chr 3:161,315,031...161,322,995

Yap1

Yes1 associated transcriptional regulator

involved_in
acts_upstream_of

GO_REF:0000107
MGI:3056522|MGI:4819826 (PMID:26902285)

GO_REF:0000107

NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010

trophectodermal cell fate commitment

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

POU class 5 homeobox 1

acts_upstream_of_or_within

(PMID:10742100)

PMID:10742100

NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891

Tead4

TEA domain transcription factor 4

acts_upstream_of_or_within

MGI:106907 (PMID:18083014)

PMID:18083014

NCBI chr 4:161,474,122...161,572,837
Ensembl chr 4:161,497,851...161,572,323

trophectodermal cell proliferation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Acvr1c

activin A receptor type 1C

acts_upstream_of_or_within
involved_in

(PMID:15150278)
GO_REF:0000107

PMID:15150278

GO_REF:0000107

NCBI chr 3:42,815,490...42,892,423
Ensembl chr 3:42,822,610...42,892,327

Cops2

COP9 signalosome subunit 2

acts_upstream_of_or_within

MGI:2678281 (PMID:12972599)

PMID:12972599

NCBI chr 3:113,084,174...113,110,090
Ensembl chr 3:113,084,176...113,109,947

Dicer1

dicer 1 ribonuclease III

acts_upstream_of_or_within

(PMID:20708584)

PMID:20708584

NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965

estrogen-related receptor beta

acts_upstream_of_or_within

MGI:1857422 (PMID:9285590)

NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791

Grn

granulin precursor

acts_upstream_of

(PMID:15901638)

PMID:15901638

NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775

Zpr1

ZPR1 zinc finger

involved_in

(MGI:3575865|PMID:15767679)

PMID:15767679

MGI:3575865

NCBI chr 8:46,564,898...46,574,719
Ensembl chr 8:46,565,146...46,574,719

trophectodermal cellular morphogenesis

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cul3

cullin 3

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:2651546 (PMID:10500095)

PMID:10500095

GO_REF:0000107

NCBI chr 9:81,592,641...81,670,428
Ensembl chr 9:81,592,641...81,670,462

estrogen-related receptor beta

acts_upstream_of_or_within

MGI:1857422 (PMID:9285590)

NCBI chr 6:106,007,701...106,163,136
Ensembl chr 6:106,008,095...106,160,791

nodal growth differentiation factor

acts_upstream_of_or_within

MGI:1856970|MGI:2158730 (PMID:11456449)

PMID:11456449

NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837

trophoblast giant cell differentiation

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cts7

cathepsin 7

acts_upstream_of_or_within

(PMID:18776147)

PMID:18776147

NCBI chr17:3,388,299...3,424,664
Ensembl chr17:3,388,299...3,393,439

E2f7

E2F transcription factor 7

involved_in

ISS
IEA
ISO

GO_REF:0000024
GO_REF:0000107
(MGI:5449497|PMID:23064266)

UniProt
Ensembl
RGD

PMID:23064266

GO_REF:0000024 GO_REF:0000107 MGI:5449497

NCBI chr 7:46,150,533...46,192,739
Ensembl chr 7:46,151,293...46,192,734

E2f8

E2F transcription factor 8

involved_in

ISS
ISO
IEA

GO_REF:0000024
(MGI:5449497|PMID:23064266)
GO_REF:0000107

UniProt
RGD
Ensembl

PMID:23064266

GO_REF:0000024 GO_REF:0000107 MGI:5449497

NCBI chr 1:98,565,717...98,584,265
Ensembl chr 1:98,565,717...98,584,098

Elf5

E74 like ETS transcription factor 5

acts_upstream_of

(PMID:24859262)

PMID:24859262

NCBI chr 3:89,808,837...89,836,977
Ensembl chr 3:89,797,880...89,836,973

Erf

Ets2 repressor factor

acts_upstream_of_or_within

MGI:3719472 (PMID:17502352)

PMID:17502352

NCBI chr 1:80,829,935...80,838,388
Ensembl chr 1:80,829,935...80,838,388

Gjb5

gap junction protein, beta 5

acts_upstream_of_or_within

(PMID:24866916)

PMID:24866916

NCBI chr 5:139,680,670...139,683,588
Ensembl chr 5:139,680,671...139,683,583

heart and neural crest derivatives expressed 1

involved_in
acts_upstream_of_or_within

GO_REF:0000024
(PMID:23911935)
(MGI:3625684|PMID:16759287), (MGI:4359361|PMID:17891141), (MGI:7484271|PMID:10611232)

PMID:10611232 PMID:16759287 PMID:17891141 PMID:23911935

GO_REF:0000024 MGI:3625684 MGI:4359361 MGI:7484271

NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213

Hectd1

HECT domain E3 ubiquitin protein ligase 1

acts_upstream_of_or_within

MGI:2137552 (PMID:24855001)

PMID:24855001

NCBI chr 6:69,181,429...69,268,045
Ensembl chr 6:69,181,436...69,268,053

Lif

LIF, interleukin 6 family cytokine

acts_upstream_of_or_within

MGI:1201791 (PMID:16258063)

PMID:16258063

NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482

Mdfi

MyoD family inhibitor

acts_upstream_of_or_within

MGI:2155446 (PMID:9799236)

PMID:9799236

NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:13,156,866...13,175,217

Nr2f2

nuclear receptor subfamily 2, group F, member 2

acts_upstream_of_or_within

MGI:2385933 (PMID:17404209)

PMID:17404209

NCBI chr 1:124,008,282...124,022,521
Ensembl chr 1:124,009,181...124,022,031

Palld

palladin, cytoskeletal associated protein

RGD

PMID:16481593

RGD:2325785

NCBI chr16:28,228,006...28,621,349
Ensembl chr16:27,981,354...28,621,337

Plg

plasminogen

involved_in
acts_upstream_of_or_within

GO_REF:0000107
MGI:1857291 (PMID:12900459)

PMID:12900459

GO_REF:0000107

NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786

Plk4

polo-like kinase 4

involved_in

ISS
IEA
ISO

GO_REF:0000024
GO_REF:0000107
(MGI:4359361|PMID:17891141)

UniProt
Ensembl
RGD

PMID:17891141

GO_REF:0000024 GO_REF:0000107 MGI:4359361

NCBI chr 2:123,802,527...123,820,942
Ensembl chr 2:123,802,512...123,820,942

Prdm1

PR/SET domain 1

acts_upstream_of_or_within

MGI:5439582 (PMID:22987638)

PMID:22987638

NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488

Senp2

SUMO specific peptidase 2

acts_upstream_of_or_within

MGI:3832730 (PMID:19090619)

PMID:19090619

NCBI chr11:78,981,429...79,018,274
Ensembl chr11:78,981,432...79,018,238

Snai1

snail family transcriptional repressor 1

acts_upstream_of_or_within

(PMID:9676199)

PMID:9676199

NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969

Sox15

SRY-box transcription factor 15

involved_in

(MGI:3625684|PMID:16759287)