Zmiz1 (zinc finger, MIZ-type containing 1) - Rat Genome Database

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Gene: Zmiz1 (zinc finger, MIZ-type containing 1) Rattus norvegicus
Analyze
Symbol: Zmiz1
Name: zinc finger, MIZ-type containing 1
RGD ID: 1311620
Description: Predicted to enable SMAD binding activity and nuclear receptor coactivator activity. Predicted to be involved in several processes, including pyramidal neuron migration to cerebral cortex; regulation of nucleic acid-templated transcription; and transmembrane receptor protein serine/threonine kinase signaling pathway. Predicted to act upstream of or within several processes, including circulatory system development; positive regulation of fibroblast proliferation; and vitellogenesis. Predicted to be located in cytosol and nucleoplasm. Orthologous to human ZMIZ1 (zinc finger MIZ-type containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC102553140; LOC361103; Rai17; retinoic acid induced 17; uncharacterized LOC102553140; uncharacterized protein LOC102553140; zinc finger MIZ domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2161,027,083 - 1,232,616 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl161,027,325 - 1,232,597 (+)Ensembl
Rnor_6.0161,749,191 - 1,954,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl161,749,191 - 1,954,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0161,726,702 - 1,932,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,037,882 - 1,245,259 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1161,149,337 - 1,241,515 (+)NCBI
Celera161,006,205 - 1,210,417 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP,ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
chlorpyrifos  (EXP)
choline  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
crotonaldehyde  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
ethanol  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
indometacin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
leflunomide  (ISO)
menadione  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
N-ethyl-N-nitrosourea  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
potassium chromate  (ISO)
pyrimidifen  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
versicolorin A  (ISO)
vorinostat  (ISO)

References

Additional References at PubMed
PMID:14609956   PMID:15572682   PMID:16777850   PMID:17967885   PMID:22082260   PMID:26522984   PMID:30639322  


Genomics

Comparative Map Data
Zmiz1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2161,027,083 - 1,232,616 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl161,027,325 - 1,232,597 (+)Ensembl
Rnor_6.0161,749,191 - 1,954,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl161,749,191 - 1,954,614 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0161,726,702 - 1,932,218 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4161,037,882 - 1,245,259 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1161,149,337 - 1,241,515 (+)NCBI
Celera161,006,205 - 1,210,417 (+)NCBICelera
Cytogenetic Map16p16NCBI
ZMIZ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381079,068,966 - 79,316,519 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1079,068,966 - 79,316,519 (+)EnsemblGRCh38hg38GRCh38
GRCh371080,828,723 - 81,076,276 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361080,631,347 - 80,746,279 (+)NCBINCBI36hg18NCBI36
Build 341080,591,875 - 80,746,279NCBI
Celera1074,115,464 - 74,363,006 (+)NCBI
Cytogenetic Map10q22.3NCBI
HuRef1074,824,464 - 75,071,974 (+)NCBIHuRef
CHM1_11081,112,306 - 81,359,830 (+)NCBICHM1_1
T2T-CHM13v2.01079,938,246 - 80,185,863 (+)NCBI
Zmiz1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391425,458,299 - 25,667,167 (+)NCBIGRCm39mm39
GRCm39 Ensembl1425,459,609 - 25,667,167 (+)Ensembl
GRCm381425,457,875 - 25,666,743 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1425,459,185 - 25,666,743 (+)EnsemblGRCm38mm10GRCm38
MGSCv371426,278,778 - 26,484,205 (+)NCBIGRCm37mm9NCBIm37
MGSCv361424,292,476 - 24,497,903 (+)NCBImm8
Celera1421,781,141 - 21,988,873 (+)NCBICelera
Cytogenetic Map14A3NCBI
Zmiz1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543713,337,825 - 13,494,889 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543713,338,077 - 13,534,283 (-)NCBIChiLan1.0ChiLan1.0
ZMIZ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11078,294,867 - 78,492,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1078,294,867 - 78,492,475 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01075,581,794 - 75,829,748 (+)NCBIMhudiblu_PPA_v0panPan3
ZMIZ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1428,807,368 - 29,035,946 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl428,854,908 - 29,045,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha428,932,137 - 29,163,079 (+)NCBI
ROS_Cfam_1.0429,108,747 - 29,340,059 (+)NCBI
ROS_Cfam_1.0 Ensembl429,156,127 - 29,339,925 (+)Ensembl
UMICH_Zoey_3.1428,979,966 - 29,210,834 (+)NCBI
UNSW_CanFamBas_1.0429,182,352 - 29,413,143 (+)NCBI
UU_Cfam_GSD_1.0429,535,577 - 29,766,873 (+)NCBI
Zmiz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,952,014 - 52,171,581 (-)NCBI
SpeTri2.0NW_004936521444,599 - 664,533 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZMIZ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1481,455,127 - 81,647,949 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11481,409,067 - 81,647,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,066,226 - 88,307,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZMIZ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1952,150,810 - 52,414,793 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl952,148,075 - 52,259,728 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604812,499,845 - 12,741,258 (-)NCBIVero_WHO_p1.0
Zmiz1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475412,145,570 - 12,299,318 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475412,106,828 - 12,299,188 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI180202  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,226,347 - 1,226,504 (+)MAPPERmRatBN7.2
Rnor_6.0161,948,369 - 1,948,525NCBIRnor6.0
Rnor_5.0161,925,954 - 1,926,110UniSTSRnor5.0
RGSC_v3.4161,238,991 - 1,239,147UniSTSRGSC3.4
Celera161,204,149 - 1,204,305UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH127616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,232,156 - 1,232,341 (+)MAPPERmRatBN7.2
Rnor_6.0161,954,174 - 1,954,358NCBIRnor6.0
Rnor_5.0161,931,759 - 1,931,943UniSTSRnor5.0
RGSC_v3.4161,244,800 - 1,244,984UniSTSRGSC3.4
Celera161,209,958 - 1,210,142UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
RH131985  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,141,986 - 1,142,206 (+)MAPPERmRatBN7.2
Rnor_6.0161,863,835 - 1,864,054NCBIRnor6.0
Rnor_5.0161,841,420 - 1,841,639UniSTSRnor5.0
RGSC_v3.4161,153,759 - 1,153,978UniSTSRGSC3.4
Celera161,119,852 - 1,120,071UniSTS
Cytogenetic Map16p16UniSTS
RH132029  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,030,324 - 1,030,531 (+)MAPPERmRatBN7.2
Rnor_6.0161,752,189 - 1,752,395NCBIRnor6.0
Rnor_5.0161,729,704 - 1,729,910UniSTSRnor5.0
RGSC_v3.4161,040,880 - 1,041,086UniSTSRGSC3.4
Celera161,009,203 - 1,009,409UniSTS
RH 3.4 Map164.1UniSTS
Cytogenetic Map16p16UniSTS
RH143398  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,230,478 - 1,230,583 (+)MAPPERmRatBN7.2
Rnor_6.0161,952,496 - 1,952,600NCBIRnor6.0
Rnor_5.0161,930,081 - 1,930,185UniSTSRnor5.0
RGSC_v3.4161,243,122 - 1,243,226UniSTSRGSC3.4
Celera161,208,280 - 1,208,384UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
AU047803  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,049,708 - 1,049,886 (+)MAPPERmRatBN7.2
Rnor_6.0161,771,539 - 1,771,716NCBIRnor6.0
Rnor_5.0161,749,056 - 1,749,233UniSTSRnor5.0
RGSC_v3.4161,060,245 - 1,060,422UniSTSRGSC3.4
Celera161,028,585 - 1,028,762UniSTS
Cytogenetic Map16p16UniSTS
AA859156  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,232,147 - 1,232,342 (+)MAPPERmRatBN7.2
Rnor_6.0161,954,165 - 1,954,359NCBIRnor6.0
Rnor_5.0161,931,750 - 1,931,944UniSTSRnor5.0
RGSC_v3.4161,244,791 - 1,244,985UniSTSRGSC3.4
Celera161,209,949 - 1,210,143UniSTS
RH 3.4 Map1616.3UniSTS
Cytogenetic Map16p16UniSTS
AU049190  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,125,998 - 1,126,237 (+)MAPPERmRatBN7.2
Rnor_6.0161,847,950 - 1,848,188NCBIRnor6.0
Rnor_5.0161,825,535 - 1,825,773UniSTSRnor5.0
RGSC_v3.4161,137,772 - 1,138,010UniSTSRGSC3.4
Celera161,103,896 - 1,104,102UniSTS
Cytogenetic Map16p16UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8hepatic copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
12903278Am16Aortic mass QTL 160.019aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)168323802995225Rat
12903279Cm115Cardiac mass QTL 1150.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)168323802995225Rat
12903281Cm116Cardiac mass QTL 1160.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)168323802995225Rat
12903952Cm117Cardiac mass QTL 1170.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)168323802995225Rat
12903954Bw186Body weight QTL 1860.011body mass (VT:0001259)body weight (CMO:0000012)168323802995225Rat
2301404Bp321Blood pressure QTL 3210.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)168323802995225Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168323804227609Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:676
Count of miRNA genes:280
Interacting mature miRNAs:373
Transcripts:ENSRNOT00000014004
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 34 25 9 18 9 1 66 32 34 11
Low 9 32 32 1 32 8 10 8 3 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014004   ⟹   ENSRNOP00000014003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,027,325 - 1,232,597 (+)Ensembl
Rnor_6.0 Ensembl161,749,191 - 1,954,614 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101223   ⟹   ENSRNOP00000082013
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl161,027,325 - 1,232,475 (+)Ensembl
RefSeq Acc Id: NM_001108393   ⟹   NP_001101863
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,027,325 - 1,232,616 (+)NCBI
Rnor_6.0161,749,191 - 1,954,633 (+)NCBI
Rnor_5.0161,726,702 - 1,932,218 (+)NCBI
RGSC_v3.4161,037,882 - 1,245,259 (+)RGD
Celera161,006,205 - 1,210,417 (+)RGD
Sequence:
RefSeq Acc Id: XM_006252538   ⟹   XP_006252600
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,027,083 - 1,232,468 (+)NCBI
Rnor_6.0161,749,206 - 1,954,485 (+)NCBI
Rnor_5.0161,726,702 - 1,932,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006252539   ⟹   XP_006252601
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,027,084 - 1,232,468 (+)NCBI
Rnor_6.0161,749,206 - 1,954,485 (+)NCBI
Rnor_5.0161,726,702 - 1,932,218 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600163   ⟹   XP_017455652
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,173,980 - 1,232,468 (+)NCBI
Rnor_6.0161,895,702 - 1,954,602 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094610   ⟹   XP_038950538
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,029,373 - 1,232,468 (+)NCBI
RefSeq Acc Id: XM_039094611   ⟹   XP_038950539
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,173,641 - 1,232,468 (+)NCBI
RefSeq Acc Id: XM_039094612   ⟹   XP_038950540
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2161,172,862 - 1,232,468 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101863   ⟸   NM_001108393
- UniProtKB: D4AE97 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252601   ⟸   XM_006252539
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006252600   ⟸   XM_006252538
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017455652   ⟸   XM_017600163
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000014003   ⟸   ENSRNOT00000014004
RefSeq Acc Id: XP_038950538   ⟸   XM_039094610
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038950540   ⟸   XM_039094612
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038950539   ⟸   XM_039094611
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000082013   ⟸   ENSRNOT00000101223
Protein Domains
SP-RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AE97-F1-model_v2 AlphaFold D4AE97 1-1072 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699890
Promoter ID:EPDNEW_R10414
Type:initiation region
Name:Zmiz1_1
Description:zinc finger, MIZ-type containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0161,749,218 - 1,749,278EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
16 1909466 1909467 G C snv F344/Jcl (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311620 AgrOrtholog
BioCyc Gene G2FUF-12278 BioCyc
Ensembl Genes ENSRNOG00000010488 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014003 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000082013 ENTREZGENE
Ensembl Transcript ENSRNOT00000014004 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000101223 ENTREZGENE
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
InterPro Zmiz1_N UniProtKB/TrEMBL
  Znf_MIZ UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:361103 UniProtKB/TrEMBL
NCBI Gene 361103 ENTREZGENE
Pfam zf-MIZ UniProtKB/TrEMBL
  Zmiz1_N UniProtKB/TrEMBL
PhenoGen Zmiz1 PhenoGen
PROSITE ZF_SP_RING UniProtKB/TrEMBL
UniProt D4AE97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Zmiz1  zinc finger, MIZ-type containing 1  LOC102553140  uncharacterized LOC102553140  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102553140  uncharacterized LOC102553140      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-04 Zmiz1  zinc finger, MIZ-type containing 1  Rai17_predicted  retinoic acid induced 17 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Rai17_predicted  retinoic acid induced 17 (predicted)      Symbol and Name status set to approved 70820 APPROVED