Sec24d (SEC24 homolog D, COPII coat complex component) - Rat Genome Database

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Gene: Sec24d (SEC24 homolog D, COPII coat complex component) Rattus norvegicus
Analyze
Symbol: Sec24d
Name: SEC24 homolog D, COPII coat complex component
RGD ID: 1311720
Description: Predicted to enable SNARE binding activity and zinc ion binding activity. Predicted to be involved in COPII-coated vesicle cargo loading. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in intracellular membrane-bounded organelle. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in Cole-Carpenter syndrome. Orthologous to human SEC24D (SEC24 homolog D, COPII coat complex component); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC310843; protein transport protein Sec24D; SEC24 family member D; SEC24 family, member D; SEC24 family, member D (S. cerevisiae); SEC24 related gene family, member D; SEC24 related gene family, member D (S. cerevisiae)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22211,418,557 - 211,526,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2211,418,623 - 211,526,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2219,091,582 - 219,198,356 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02216,991,462 - 217,098,234 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02211,845,703 - 211,952,480 (+)NCBIRnor_WKY
Rnor_6.02227,455,704 - 227,562,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,455,722 - 227,562,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,815,650 - 246,919,957 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,985,811 - 220,096,797 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12219,950,676 - 220,059,192 (+)NCBI
Celera2203,833,456 - 203,940,242 (+)NCBICelera
Cytogenetic Map2q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bupropion  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
cylindrospermopsin  (ISO)
cyproconazole  (ISO)
decabromodiphenyl ether  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
glyphosate  (EXP)
hydroquinone  (ISO)
ibogaine  (ISO)
ivermectin  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
nefazodone  (EXP)
nickel atom  (ISO)
nickel subsulfide  (EXP)
orlistat  (ISO)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:17499046   PMID:18843296   PMID:20427317   PMID:23596517   PMID:24876386   PMID:28801610  


Genomics

Comparative Map Data
Sec24d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22211,418,557 - 211,526,588 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2211,418,623 - 211,526,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2219,091,582 - 219,198,356 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.02216,991,462 - 217,098,234 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.02211,845,703 - 211,952,480 (+)NCBIRnor_WKY
Rnor_6.02227,455,704 - 227,562,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2227,455,722 - 227,562,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02246,815,650 - 246,919,957 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42219,985,811 - 220,096,797 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12219,950,676 - 220,059,192 (+)NCBI
Celera2203,833,456 - 203,940,242 (+)NCBICelera
Cytogenetic Map2q42NCBI
SEC24D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384118,722,823 - 118,836,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4118,722,823 - 118,838,683 (-)EnsemblGRCh38hg38GRCh38
GRCh374119,643,978 - 119,757,281 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364119,863,427 - 119,976,702 (-)NCBINCBI36Build 36hg18NCBI36
Build 344120,001,581 - 120,114,857NCBI
Celera4117,004,529 - 117,117,866 (-)NCBICelera
Cytogenetic Map4q26NCBI
HuRef4115,365,531 - 115,479,569 (-)NCBIHuRef
CHM1_14119,619,921 - 119,733,840 (-)NCBICHM1_1
T2T-CHM13v2.04122,028,139 - 122,141,474 (-)NCBIT2T-CHM13v2.0
Sec24d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393123,058,451 - 123,159,290 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3123,061,104 - 123,159,290 (+)EnsemblGRCm39 Ensembl
GRCm383123,264,801 - 123,365,641 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3123,267,455 - 123,365,641 (+)EnsemblGRCm38mm10GRCm38
MGSCv373122,970,414 - 123,068,554 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363123,259,518 - 123,357,658 (+)NCBIMGSCv36mm8
Celera3129,677,953 - 129,787,733 (+)NCBICelera
Cytogenetic Map3G1NCBI
Sec24d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542821,381,809 - 21,500,429 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542821,381,809 - 21,475,329 (+)NCBIChiLan1.0ChiLan1.0
SEC24D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14121,468,914 - 121,584,647 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4121,468,914 - 121,582,156 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04110,916,508 - 111,033,298 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SEC24D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13237,690,158 - 37,795,762 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3237,690,399 - 37,924,252 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha324,279,402 - 4,383,982 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03237,911,481 - 38,017,151 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3237,911,481 - 38,014,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13237,933,932 - 38,039,567 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03237,657,914 - 37,762,852 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0322,038,782 - 2,143,773 (+)NCBIUU_Cfam_GSD_1.0
Sec24d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530167,620,346 - 67,698,409 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936869522,706 - 563,704 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936869485,706 - 566,591 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC24D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8104,882,035 - 105,005,398 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18104,560,723 - 105,005,400 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28112,778,267 - 112,789,489 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEC24D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1766,208,005 - 66,318,222 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl766,207,765 - 66,318,206 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603745,045,256 - 45,155,626 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec24d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248675,536,888 - 5,631,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sec24d
967 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:506
Count of miRNA genes:232
Interacting mature miRNAs:264
Transcripts:ENSRNOT00000064809
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561221167075Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1598838Bp290Blood pressure QTL 2901.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166539266211539266Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2168594495213594495Rat
61469Bp16Blood pressure QTL 165.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
70162Bp63Blood pressure QTL 635.64arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)2169745596214745596Rat
2293084Iddm26Insulin dependent diabetes mellitus QTL 262.9blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2174930955213594495Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2185876309219753474Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2185876309219753474Rat
61458Bp10Blood pressure QTL 103.42arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
1298083Bp158Blood pressure QTL 1582.62arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189020722215287351Rat
1331745Bp203Blood pressure QTL 2034.377arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2189599258218414891Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
2299161Iddm33Insulin dependent diabetes mellitus QTL 332.98blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2206312063220876787Rat
631203Gluco14Glucose level QTL 140.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)2206665645219003804Rat

Markers in Region
UniSTS:234818  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22211,510,769 - 211,510,858 (+)MAPPERmRatBN7.2
Rnor_6.02227,545,448 - 227,545,536NCBIRnor6.0
Rnor_5.02246,904,396 - 246,904,484UniSTSRnor5.0
RGSC_v3.42220,081,023 - 220,081,111UniSTSRGSC3.4
Celera2203,924,201 - 203,924,289UniSTS
Cytogenetic Map2q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 44 41 12 41 1 1 11 35 34 11 1
Low 13 7 7 10 63 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000064809   ⟹   ENSRNOP00000059031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2211,418,623 - 211,526,587 (+)Ensembl
Rnor_6.0 Ensembl2227,455,722 - 227,562,319 (+)Ensembl
RefSeq Acc Id: NM_001309453   ⟹   NP_001296382
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22211,418,623 - 211,526,588 (+)NCBI
Rnor_6.02227,455,723 - 227,562,801 (+)NCBI
Celera2203,833,456 - 203,940,242 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006233272   ⟹   XP_006233334
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22211,418,557 - 211,526,588 (+)NCBI
Rnor_6.02227,455,704 - 227,562,801 (+)NCBI
Rnor_5.02246,815,650 - 246,919,957 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001296382 (Get FASTA)   NCBI Sequence Viewer  
  XP_006233334 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68946 (Get FASTA)   NCBI Sequence Viewer  
  EDL82122 (Get FASTA)   NCBI Sequence Viewer  
  EDL82123 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_006233334   ⟸   XM_006233272
- Peptide Label: isoform X1
- UniProtKB: G3V9S9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001296382   ⟸   NM_001309453
- UniProtKB: A0A0G2QC63 (UniProtKB/TrEMBL),   B5DF68 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000059031   ⟸   ENSRNOT00000064809
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9S9-F1-model_v2 AlphaFold G3V9S9 1-1033 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691737
Promoter ID:EPDNEW_R2258
Type:initiation region
Name:Sec24d_1
Description:SEC24 homolog D, COPII coat complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02227,455,723 - 227,455,783EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311720 AgrOrtholog
BioCyc Gene G2FUF-51328 BioCyc
Ensembl Genes ENSRNOG00000014872 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059031 ENTREZGENE
  ENSRNOP00000059031.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064809 ENTREZGENE
  ENSRNOT00000064809.4 UniProtKB/TrEMBL
Gene3D-CATH 3.40.20.10 UniProtKB/TrEMBL
  3.40.50.410 UniProtKB/TrEMBL
InterPro ADF-H/Gelsolin-like_dom UniProtKB/TrEMBL
  Gelsolin-like_dom_sf UniProtKB/TrEMBL
  Gelsolin_dom UniProtKB/TrEMBL
  Sec23/24_helical_dom UniProtKB/TrEMBL
  Sec23/24_helical_dom_sf UniProtKB/TrEMBL
  Sec23/24_trunk_dom UniProtKB/TrEMBL
  Sec23_24_beta_S UniProtKB/TrEMBL
  Sec24-like_trunk_dom UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
  Znf_Sec23_Sec24 UniProtKB/TrEMBL
  Znf_Sec23_Sec24_sf UniProtKB/TrEMBL
KEGG Report rno:310843 UniProtKB/TrEMBL
NCBI Gene 310843 ENTREZGENE
Pfam Gelsolin UniProtKB/TrEMBL
  Sec23_BS UniProtKB/TrEMBL
  Sec23_helical UniProtKB/TrEMBL
  Sec23_trunk UniProtKB/TrEMBL
  zf-Sec23_Sec24 UniProtKB/TrEMBL
PhenoGen Sec24d PhenoGen
Superfamily-SCOP Sec23_helical UniProtKB/TrEMBL
  SSF53300 UniProtKB/TrEMBL
  SSF82754 UniProtKB/TrEMBL
  SSF82919 UniProtKB/TrEMBL
UniProt A0A0G2QC63 ENTREZGENE, UniProtKB/TrEMBL
  B5DF68 ENTREZGENE
  G3V9S9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B5DF68 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-13 Sec24d  SEC24 homolog D, COPII coat complex component  Sec24d  SEC24 family member D  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-11 Sec24d  SEC24 family member D  Sec24d  SEC24 family, member D (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-20 Sec24d  SEC24 family, member D (S. cerevisiae)  Sec24d  SEC24 related gene family, member D (S. cerevisiae)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Sec24d  SEC24 related gene family, member D (S. cerevisiae)   Sec24d_predicted  SEC24 related gene family, member D (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sec24d_predicted  SEC24 related gene family, member D (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED