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Gene: Ythdc1 (YTH N6-methyladenosine RNA binding protein C1) Rattus norvegicus

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Symbol:

Ythdc1

Name:

YTH N6-methyladenosine RNA binding protein C1

RGD ID:

621706

Description:

Enables N6-methyladenosine-containing RNA reader activity. Involved in mRNA splicing, via spliceosome. Located in nuclear body. Orthologous to human YTHDC1 (YTH N6-methyladenosine RNA binding protein C1); INTERACTS WITH 2,4-dinitrotoluene; 3H-1,2-dithiole-3-thione; ammonium chloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

putative splicing factor YT521; RA301-binding protein; splicing factor YT521; splicing factor YT521-B; Yt521; YTH domain containing 1; YTH domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YTHDC1 (YTH N6-methyladenosine RNA binding protein C1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ythdc1 (YTH domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ythdc1 (YTH N6-methyladenosine RNA binding protein C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YTHDC1 (YTH N6-methyladenosine RNA binding protein C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YTHDC1 (YTH N6-methyladenosine RNA binding protein C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ythdc1 (YTH N6-methyladenosine RNA binding protein C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YTHDC1 (YTH N6-methyladenosine RNA binding protein C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	YTHDC1 (YTH N6-methyladenosine RNA binding protein C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ythdc1 (YTH N6-methyladenosine RNA binding protein C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	YTHDC1 (YTH N6-methyladenosine RNA binding protein C1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ythdc1 (YTH domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ythdc1 (YTH domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ythdc1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ythdc1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ythdc1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	21,540,278 - 21,570,769 (-)	Ensembl				GRCr8
mRatBN7.2	14	21,185,438 - 21,215,934 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	21,185,440 - 21,216,028 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	21,535,928 - 21,566,082 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	22,854,869 - 22,885,023 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	21,385,952 - 21,416,107 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	22,971,834 - 23,002,326 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	22,971,836 - 23,002,011 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	22,869,117 - 22,899,637 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	22,805,108 - 22,835,283 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	20,678,761 - 20,708,683 (-)	NCBI		Celera
RGSC_v3.1	14	22,805,107 - 22,835,283 (-)	NCBI
Cytogenetic Map	14	p21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-tribromophenol (ISO)

2,4-dinitrotoluene (EXP)

3H-1,2-dithiole-3-thione (EXP)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

ammonium chloride (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

atrazine (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

chrysene (ISO)

cisplatin (ISO)

clobetasol (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

crocidolite asbestos (ISO)

DDE (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

disodium selenite (ISO)

diuron (EXP)

flutamide (EXP)

FR900359 (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

inulin (ISO)

ivermectin (ISO)

linsidomine (EXP)

methylisothiazolinone (ISO)

mono(2-ethylhexyl) phthalate (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

PhIP (ISO)

potassium chromate (ISO)

rotenone (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thapsigargin (EXP)

theophylline (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

troglitazone (ISO)

tungsten (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dosage compensation by inactivation of X chromosome (IEA,ISO,ISS)

in utero embryonic development (IEA,ISO)

mRNA alternative polyadenylation (IEA,ISO)

mRNA export from nucleus (IEA,ISO,ISS)

mRNA processing (IEA)

mRNA splice site recognition (IEA,ISO,ISS)

mRNA splicing, via spliceosome (IBA,IDA)

post-transcriptional regulation of gene expression (IEA,ISO,ISS)

primary follicle stage (IEA,ISO)

regulation of alternative mRNA splicing, via spliceosome (IBA,IEA,ISO)

regulation of mRNA splicing, via spliceosome (IEA,ISO,ISS)

RNA splicing (IEA)

spermatogenesis (IEA,ISO)

Cellular Component

nuclear body (IDA)

nuclear speck (IEA,ISO,ISS)

nucleoplasm (IBA,IDA,IEA,ISO)

nucleus (IEA,ISO,ISS)

plasma membrane (IEA,ISO)

Molecular Function

mRNA binding (IBA,IEA)

N6-methyladenosine-containing RNA reader activity (IBA,IDA,IEA,ISO)

protein binding (IPI,ISO)

RNA binding (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59(fyn).	Hartmann AM, etal., Mol Biol Cell 1999 Nov;10(11):3909-26.
3.	Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA.	Heinrich B, etal., J Biol Chem. 2009 May 22;284(21):14303-15. Epub 2009 Mar 12.
4.	Cloning of a gene, YT521, for a novel RNA splicing-related protein induced by hypoxia/reoxygenation.	Imai Y, etal., Brain Res Mol Brain Res 1998 Jan;53(1-2):33-40.
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA.	Theler D, etal., Nucleic Acids Res. 2014 Dec 16;42(22):13911-9. doi: 10.1093/nar/gku1116. Epub 2014 Nov 11.

Additional References at PubMed

PMID:10973987	PMID:11118435	PMID:20167602	PMID:22658674	PMID:22681889	PMID:25242552	PMID:26318451	PMID:26876937	PMID:27602518	PMID:28984244	PMID:29262316	PMID:29799838
PMID:33188203	PMID:36443649	PMID:39407279

Genomics

Comparative Map Data

Ythdc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	21,540,278 - 21,570,769 (-)	Ensembl				GRCr8
mRatBN7.2	14	21,185,438 - 21,215,934 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	21,185,440 - 21,216,028 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	21,535,928 - 21,566,082 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	22,854,869 - 22,885,023 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	21,385,952 - 21,416,107 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	22,971,834 - 23,002,326 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	22,971,836 - 23,002,011 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	22,869,117 - 22,899,637 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	22,805,108 - 22,835,283 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	20,678,761 - 20,708,683 (-)	NCBI		Celera
RGSC_v3.1	14	22,805,107 - 22,835,283 (-)	NCBI
Cytogenetic Map	14	p21	NCBI

YTHDC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	68,310,387 - 68,350,090 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	68,310,387 - 68,350,090 (-)	Ensembl			hg38	GRCh38
GRCh37	4	69,176,105 - 69,215,808 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	68,858,700 - 68,898,419 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	69,007,803 - 69,044,573	NCBI
Celera	4	66,635,442 - 66,675,796 (-)	NCBI		Celera
Cytogenetic Map	4	q13.2	NCBI
HuRef	4	65,089,319 - 65,129,187 (-)	NCBI		HuRef
CHM1_1	4	69,212,741 - 69,252,459 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	71,751,442 - 71,791,158 (-)	NCBI		T2T-CHM13v2.0

Ythdc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	86,951,349 - 86,984,518 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	86,952,080 - 86,984,518 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	86,803,980 - 86,836,659 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	86,804,221 - 86,836,659 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	87,233,515 - 87,265,682 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	87,233,515 - 87,265,682 (+)	NCBI		MGSCv36	mm8
Celera	5	84,024,500 - 84,056,666 (+)	NCBI		Celera
Cytogenetic Map	5	E1	NCBI
cM Map	5	43.56	NCBI

Ythdc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955447	4,476,004 - 4,504,913 (-)	Ensembl
ChiLan1.0	NW_004955447	4,474,920 - 4,505,359 (-)	NCBI	ChiLan1.0	ChiLan1.0

YTHDC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	61,555,448 - 61,592,212 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	61,757,272 - 61,794,042 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	55,701,639 - 55,738,377 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	62,095,953 - 62,132,609 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	62,095,948 - 62,132,609 (+)	Ensembl			panPan2	panpan1.1

YTHDC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	58,818,424 - 58,858,241 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	58,818,796 - 58,857,571 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	58,754,265 - 58,793,764 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	59,521,222 - 59,560,835 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	59,521,575 - 59,560,375 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	59,168,224 - 59,207,780 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	58,652,816 - 58,692,355 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	59,672,096 - 59,711,674 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ythdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	17,567,421 - 17,598,082 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936582	126,736 - 161,586 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936582	130,593 - 161,275 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YTHDC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	66,086,523 - 66,122,710 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	66,086,528 - 66,122,717 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

YTHDC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	633,158 - 670,000 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	633,172 - 671,030 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666066	721,828 - 758,702 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ythdc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624761	346,268 - 374,954 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Ythdc1
310 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	640
Count of miRNA genes:	204
Interacting mature miRNAs:	243
Transcripts:	ENSRNOT00000002736, ENSRNOT00000002740
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300114	Srn2	Serum renin concentration QTL 2	3.27		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	3957878	21572472	Rat
631528	Scl11	Serum cholesterol level QTL 11	4.9		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	14	17875645	36079022	Rat
7411573	Bw139	Body weight QTL 139	4.7	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	14	1	40068101	Rat
9589814	Gluco67	Glucose level QTL 67	4.54	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	1	40068101	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9393298	39411170	Rat
631212	Bw5	Body weight QTL5	5.43		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	11334906	30674469	Rat
2302277	Gluco38	Glucose level QTL 38	5.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	28389666	Rat
1331740	Bw26	Body weight QTL 26	3.028		body mass (VT:0001259)	body weight (CMO:0000012)	14	3957878	31121464	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8621398	53621398	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18915454	42433608	Rat
70195	Mcs8	Mammary carcinoma susceptibility QTL 8	4.28		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	14	3957878	24886169	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11334716	100078267	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18895192	63895192	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17906726	54251504	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41415516	Rat
70204	Niddm20	Non-insulin dependent diabetes mellitus QTL 20	5.1	0.000008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	1	31893212	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8621398	53621398	Rat
1300140	Srn3	Serum renin concentration QTL 3	3.19		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	14	15137594	31238250	Rat

Markers in Region

D14Rat81

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	21,554,331 - 21,554,561 (+)	Marker Load Pipeline
mRatBN7.2	14	21,199,493 - 21,199,724 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	22,985,890 - 22,986,118	NCBI	Rnor6.0
Rnor_5.0	14	22,883,173 - 22,883,401	UniSTS	Rnor5.0
RGSC_v3.4	14	22,819,161 - 22,819,390	RGD	RGSC3.4
RGSC_v3.4	14	22,819,162 - 22,819,390	UniSTS	RGSC3.4
RGSC_v3.1	14	22,819,162 - 22,819,390	RGD
RH 3.4 Map	14	283.0	UniSTS
RH 3.4 Map	14	283.0	RGD
RH 2.0 Map	14	269.7	RGD
SHRSP x BN Map	14	10.2199	RGD
Cytogenetic Map	14	p21	UniSTS

BF388492

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	21,557,822 - 21,557,956 (+)	Marker Load Pipeline
mRatBN7.2	14	21,202,984 - 21,203,119 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	22,989,379 - 22,989,513	NCBI	Rnor6.0
Rnor_5.0	14	22,886,662 - 22,886,796	UniSTS	Rnor5.0
RGSC_v3.4	14	22,822,651 - 22,822,785	UniSTS	RGSC3.4
Celera	14	20,696,055 - 20,696,189	UniSTS
RH 3.4 Map	14	309.9	UniSTS
Cytogenetic Map	14	p21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001437202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001437207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_133423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091591	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272837	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF144731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D78303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002736 ⟹ ENSRNOP00000002736

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	21,540,278 - 21,560,946 (-)	Ensembl
mRatBN7.2 Ensembl	14	21,185,440 - 21,206,109 (-)	Ensembl
Rnor_6.0 Ensembl	14	22,971,836 - 23,002,011 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107561 ⟹ ENSRNOP00000077334

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	21,185,440 - 21,206,519 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110796 ⟹ ENSRNOP00000080807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	21,540,278 - 21,570,769 (-)	Ensembl
mRatBN7.2 Ensembl	14	21,185,440 - 21,215,932 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118221 ⟹ ENSRNOP00000087598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	21,540,278 - 21,570,653 (-)	Ensembl
mRatBN7.2 Ensembl	14	21,185,440 - 21,216,028 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119155 ⟹ ENSRNOP00000095873

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	21,540,278 - 21,570,769 (-)	Ensembl
mRatBN7.2 Ensembl	14	21,185,440 - 21,215,932 (-)	Ensembl

RefSeq Acc Id:

NM_133423 ⟹ NP_596914

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,278 - 21,570,454 (-)	NCBI
mRatBN7.2	14	21,185,440 - 21,215,617 (-)	NCBI
Rnor_6.0	14	22,971,836 - 23,002,011 (-)	NCBI
Rnor_5.0	14	22,869,117 - 22,899,637 (-)	NCBI
RGSC_v3.4	14	22,805,108 - 22,835,283 (-)	RGD
Celera	14	20,678,761 - 20,708,683 (-)	RGD

Sequence:

show sequence

ATGGCGGCCGACAGCCGGGAGGAGAAAGATGGGGAACTTAATGTTTTAGATGATATTTTGACTG
AAGTACCAGAACAGGATGATGAACTGTATAATCCAGAGAGTGAACAAGATAAAAATGAGAAAAA
AGGATCAAAAAGAAAAAGTGAAAGAATGGAATCTATTGACACCAAGCGACAGAAGCCTTCTATC
CATTCAAGACAACTGATTTCTAAGCCACTAAGCTCATCTGTTAGCAATAATAAAAGAATAGTTA
GTACAAAAGGAAAGTCGGTTACAGAATATAAAAATGAGGAATATCAAAGATCTGAAAGGAACAA
GCGTCTAGATGCTGATCGAAAAATTCGTCTGTCAAGCAGTTCCTCTAGAGAACCTTACAAGAGT
CAACCAGAAAAACCTTGTCTACGGAAAAGGGATTCTGAAAGAAGGGCCAAGTCTCCTACACCAG
ATGGTTCTGAGAGAATTGGGCTTGAAGTTGATAGACGTGCAAGCAGATCCAGCCAGTCTTCAAA
GGAAGAGGGGAACTCTGAGGAGTATGGCTCTGACCACGAGACAGGAAGCAGTGCTTCTTCTGAA
CAGGGCAACAACACTGAGAATGAGGAGGAAGGAGGGGAAGAAGATGTAGAGGAAGATGAAGAGG
TAGATGAAGATGGAGATGATGATGAGGAAGTGGATGAAGATGCGGAGGAGGAGGAGGACGAGGA
AGAAGATGAGGAGGAGGAGGATGAGGAAGAAGAAGAGGAAGAGGAAGAAGAATATGAACAGGAT
GAGAGAGATCAGAAGGAAGAAGGGAATGATTATGACACCCGTAGTGAGGCCAGTGATTCTGGTT
CTGAGTCTGTTTCCTTCACAGATGGATCTGTCAGGTCTGGTTCAGGAACAGATGGATCAGATGA
GAAAAAGAAGGAAAGGAAGAGAGCTCGAGGCATATCACCCATTGTCTTTGATAGAAGTGGCAGT
TCTGCATCAGAGTCATATGCAGGTTCAGAAAAGAAGCATGAGAAATTATCATCTTCCGTTCGTG
CTGTCCGAAAAGATCAAACCAGTAAACTCAAATCTGTCCTTCAGGATGCAAGATTTTTCCTCAT
AAAGAGTAACAACCATGAGAATGTGTCTCTTGCCAAAGCAAAGGGTGTATGGTCCACATTACCT
GTAAATGAGAAGAAATTAAATCTTGCGTTTAGATCTGCAAGGAGTGTTATATTAATATTTTCTG
TCAGGGAAAGTGGAAAGTTTCAAGGTTTTGCCAGATTGTCATCAGAATCGCATCATGGTGGCTC
TCCTATACATTGGGTGCTTCCAGCAGGAATGAGTGCTAAAATGCTTGGAGGTGTTTTTAAAATT
GACTGGATTTGCAGGCGTGAATTACCCTTTACTAAGTCAGCTCATCTCACCAATCCCTGGAATG
AACATAAGCCAGTAAAGATTGGACGTGATGGACAGGAAATTGAACTTGAATGTGGAACCCAGCT
TTGTCTTCTGTTTCCCCCTGATGAAAGTATTGACTTGTATCAGCTCATTCATAAAATGCGTCAC
AAGAGAAGAATGCATTCTCAGCCTCGATCAAGAGGACGTCCATCCCGTCGAGAACCAGTCCGGG
ATGTGGGAAGGCGTCGACCAGAAGATTATGATATTCATAACAGCAGAAAGAAACCAAGGATTGA
CTATCCCCCTGAGTTTCACCAGAGACCAGGGTATTTAAAGGATCCCCGATACCAGGAAGTTGAC
AGTTTCACAAATCTTATTCCCAACAGACGATTTTCAGGAGTTCGCCGAGATGTGTTTTTAAATG
GGTCCTACAATGATTATGTGAGGGAATTTCATAACATGGGACCACCGCCTCCTTGGCAAGGAAT
GCCTCCTTACCCGGGAATAGAACAGCCTCCACACCATCCCTACTACCAGCACCATGCCCCGCCT
CCTCAAGCCCACCCCCCTTACTCAGGACACCATCCGGTACCACATGAAGCAAGATACAGAGATA
AACGAGTACATGACTATGATATGAGGGTTGATGATTTCCTTCGCCGCACACAAGCCGTTGTCAG
TGGTCGGAGAAGTAGACCCCGAGAAAGAGATCGGGAGCGAGAGCGAGACCGCCCTAGAGATAAC
AGAAGAGATAGAGAGCGAGACAGAGGTCGTGATCGAGAAAGAGAGAGAGAAAGAATATGTGATC
GGGACAGAGACCGAGGGGAAAGAGGTCGTTATCGAAGATAATGTGCTTTTTGGAAGCACTGACT
GAAGATAAAAAATATTGTATTTTTTTTGTGTGTGTTTACAAGTAGTAAATTTATTTTCAGCTGT
CTACTTAAAGCTCATTGTGTAGAAGGATTTATTATCTTCTTTGTTCCAAGCATGCAGTAGAATA
AGAACTGGAAAACTCAGATCCGCCAAAAAATGCACAGTTGACAGTTGAGTTGACACTTTTATTG
GGGCAGAATGGAACAGTCCAAGAATGTAGATATTGATTCATTCTCCATAAATGTTCTTTTTACA
GTGTATTCATCCTAGAGTTATTTTGTTTGTTTGTTTTCCTTCTTTTGGACCTTGGTCAATACTG
CCATAGTATTTTGCTTTGTGTTTCTATAGGTAGCTGCACACGGTTCAGTAAAAATAATGCTGCT
ATCAAGTATGCAGATATTGAGTATGATGGTTTGACTATATGGCAGTGTTGTAGCAGCCTCTCGG
TTTCTCCTCTTCCCTCCTTTTTTTTAAACCTATAAATCCACTTTTTTTTTAAGTCTTCAATGAT
GAGAGCAATATTAAGAAGACATTGCTATCTAATTTTTAATCTTTTTAAATAAAACGTTCCTATG
TTCAGTAGCATGGTCGATGCTATTGTTTAGCCTTCCTTCCAAACTGTACATTGGCTTGGAATGT
TCAGTTTTGCGTGTGTGGCAGCAGAAGATAACCCCACATTCTACATTGCTACTGTTTTGTATGA
AATAAATTGGTAAAGATTGACACT

hide sequence

RefSeq Acc Id:

XM_006250805 ⟹ XP_006250867

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,185,438 - 21,215,930 (-)	NCBI
Rnor_6.0	14	22,971,834 - 23,002,326 (-)	NCBI
Rnor_5.0	14	22,869,117 - 22,899,637 (-)	NCBI

Sequence:

show sequence

GTTTCGCGCAGGAAGCAGGCTCCATTTTAGCGCCGCCCGCCGTCGCCATCTGTTTCTCTCTCCT
CCCCCTTGTCTCTGGTGTGGCCGAATCCCCAACAGAAAGATTGAAGCCCGCGCTGTCCGAGGTC
AGGCGGGAAGAGAACCAGAGGACGGGAGGAAGGGTGCTCGTAGGAGCTGAGTGGAGCAGGTCAG
GTCGAAGCGCGCGGCCCGCCGGACGGACTGACGGACGGACTCGTGCGCCTGCGGCCGCGGCTGC
GGCGCCCGCGCGACTCGCTTCCCGGCGGCGGTGGCGGCGGCGGAAGCCGGAGGGCAGCCATGGC
GGCCGACAGCCGGGAGGAGAAAGAAGATTGCCAAGACTGCTCCAGCTGGTTGTTTTCAGATGGG
GAACTTAATGTTTTAGATGATATTTTGACTGAAGTACCAGAACAGGATGATGAACTGTATAATC
CAGAGAGTGAACAAGATAAAAATGAGAAAAAAGGATCAAAAAGAAAAAGTGAAAGAATGGAATC
TATTGACACCAAGCGACAGAAGCCTTCTATCCATTCAAGACAACTGATTTCTAAGCCACTAAGC
TCATCTGTTAGCAATAATAAAAGAATAGTTAGTACAAAAGGAAAGTCGGTTACAGAATATAAAA
ATGAGGAATATCAAAGATCTGAAAGGAACAAGCGTCTAGATGCTGATCGAAAAATTCGTCTGTC
AAGCAGTTCCTCTAGAGAACCTTACAAGAGTCAACCAGAAAAACCTTGTCTACGGAAAAGGGAT
TCTGAAAGAAGGGCCAAGTCTCCTACACCAGATGGTTCTGAGAGAATTGGGCTTGAAGTTGATA
GACGTGCAAGCAGATCCAGCCAGTCTTCAAAGGAAGAGGGGAACTCTGAGGAGTATGGCTCTGA
CCACGAGACAGGAAGCAGTGCTTCTTCTGAACAGGGCAACAACACTGAGAATGAGGAGGAAGGA
GGGGAAGAAGATGTAGAGGAAGATGAAGAGGTAGATGAAGATGGAGATGATGATGAGGAAGTGG
ATGAAGATGCGGAGGAGGAGGAGGACGAGGAAGAAGATGAGGAGGAGGAGGATGAGGAAGAAGA
AGAGGAAGAGGAAGAAGAATATGAACAGGATGAGAGAGATCAGAAGGAAGAAGGGAATGATTAT
GACACCCGTAGTGAGGCCAGTGATTCTGGTTCTGAGTCTGTTTCCTTCACAGATGGATCTGTCA
GGTCTGGTTCAGGAACAGATGGATCAGATGAGAAAAAGAAGGAAAGGAAGAGAGCTCGAGGCAT
ATCACCCATTGTCTTTGATAGAAGTGGCAGTTCTGCATCAGAGTCATATGCAGGTTCAGAAAAG
AAGCATGAGAAATTATCATCTTCCGTTCGTGCTGTCCGAAAAGATCAAACCAGTAAACTCAAAT
ATGTCCTTCAGGATGCAAGATTTTTCCTCATAAAGAGTAACAACCATGAGAATGTGTCTCTTGC
CAAAGCAAAGGGTGTATGGTCCACATTACCTGTAAATGAGAAGAAATTAAATCTTGCGTTTAGA
TCTGCAAGGAGTGTTATATTAATATTTTCTGTCAGGGAAAGTGGAAAGTTTCAAGGTTTTGCCA
GATTGTCATCAGAATCGCATCATGGTGGCTCTCCTATACATTGGGTGCTTCCAGCAGGAATGAG
TGCTAAAATGCTTGGAGGTGTTTTTAAAATTGACTGGATTTGCAGGCGTGAATTACCCTTTACT
AAGTCAGCTCATCTCACCAATCCCTGGAATGAACATAAGCCAGTAAAGATTGGACGTGATGGAC
AGGAAATTGAACTTGAATGTGGAACCCAGCTTTGTCTTCTGTTTCCCCCTGATGAAAGTATTGA
CTTGTATCAGCTCATTCATAAAATGCGTCACAAGAGAAGAATGCATTCTCAGCCTCGATCAAGA
GGACGTCCATCCCGTCGAGAACCAGTCCGGGATGTGGGAAGGCGTCGACCAGAAGATTATGATA
TTCATAACAGCAGAAAGAAACCAAGGATTGACTATCCCCCTGAGTTTCACCAGAGACCAGGGTA
TTTAAAGGATCCCCGATACCAGGAAGTTGACAGTTTCACAAATCTTATTCCCAACAGACGATTT
TCAGGAGTTCGCCGAGATGTGTTTTTAAATGGGTCCTACAATGATTATGTGAGGGAATTTCATA
ACATGGGACCACCGCCTCCTTGGCAAGGAATGCCTCCTTACCCGGGAATAGAACAGCCTCCACA
CCATCCCTACTACCAGCACCATGCCCCGCCTCCTCAAGCCCACCCCCCTTACTCAGGACACCAT
CCGGTACCACATGAAGCAAGATACAGAGATAAACGAGTACATGACTATGATATGAGGGTTGATG
ATTTCCTTCGCCGCACACAAGCCGTTGTCAGTGGTCGGAGAAGTAGACCCCGAGAAAGAGATCG
GGAGCGAGAGCGAGACCGCCCTAGAGATAACAGAAGAGATAGAGAGCGAGACAGAGGTCGTGAT
CGAGAAAGAGAGAGAGAAAGAATATGTGATCGGGACAGAGACCGAGGGGAAAGAGGTCGTTATC
GAAGATAATGTGCTTTTTGGAAGCACTGACTGAAGATAAAAAATATTGTATTTTTTTTGTGTGT
GTTTACAAGTAGTAAATTTATTTTCAGCTGTCTACTTAAAGCTCATTGTGTAGAAGGATTTATT
ATCTTCTTTGTTCCAAGCATGCAGTAGAATAAGAACTGGAAAACTCAGATCCGCCAAAAAATGC
ACAGTTGACAGTTGAGTTGACACTTTTATTGGGGCAGAATGGAACAGTCCAAGAATGTAGATAT
TGATTCATTCTCCATAAATGTTCTTTTTACAGTGTATTCATCCTAGAGTTATTTTGTTTGTTTG
TTTTCCTTCTTTTGGACCTTGGTCAATACTGCCATAGTATTTTGCTTTGTGTTTCTATAGGTAG
CTGCACACGGTTCAGTAAAAATAATGCTGCTATCAAGTATGCAGATATTGAGTATGATGGTTTG
ACTATATGGCAGTGTTGTAGCAGCCTCTCGGTTTCTCCTCTTCCCTCCTTTTTTTTAAACCTAT
AAATCCACTTTTTTTTTAAGTCTTCAATGATGAGAGCAATATTAAGAAGACATTGCTATCTAAT
TTTTAATCTTTTTAAATAAAACGTTCCTATGTTCAGTAGCATGGTCGATGCTATTGTTTAGCCT
TCCTTCCAAACTGTACATTGGCTTGGAATGTTCAGTTTTGCGTGTGTGGCAGCAGAAGATAACC
CCACATTCTACATTGCTACTGTTTTGTATGAAATAAATTGGTAAAGATTGACACTAA

hide sequence

RefSeq Acc Id:

XM_006250806 ⟹ XP_006250868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,185,438 - 21,215,931 (-)	NCBI
Rnor_6.0	14	22,971,834 - 23,002,325 (-)	NCBI
Rnor_5.0	14	22,869,117 - 22,899,637 (-)	NCBI

Sequence:

show sequence

TTTCGCGCAGGAAGCAGGCTCCATTTTAGCGCCGCCCGCCGTCGCCATCTGTTTCTCTCTCCTC
CCCCTTGTCTCTGGTGTGGCCGAATCCCCAACAGAAAGATTGAAGCCCGCGCTGTCCGAGGTCA
GGCGGGAAGAGAACCAGAGGACGGGAGGAAGGGTGCTCGTAGGAGCTGAGTGGAGCAGGTCAGG
TCGAAGCGCGCGGCCCGCCGGACGGACTGACGGACGGACTCGTGCGCCTGCGGCCGCGGCTGCG
GCGCCCGCGCGACTCGCTTCCCGGCGGCGGTGGCGGCGGCGGAAGCCGGAGGGCAGCCATGGCG
GCCGACAGCCGGGAGGAGAAAGATGGGGAACTTAATGTTTTAGATGATATTTTGACTGAAGTAC
CAGAACAGGATGATGAACTGTATAATCCAGAGAGTGAACAAGATAAAAATGAGAAAAAAGGATC
AAAAAGAAAAAGTGAAAGAATGGAATCTATTGACACCAAGCGACAGAAGCCTTCTATCCATTCA
AGACAACTGATTTCTAAGCCACTAAGCTCATCTGTTAGCAATAATAAAAGAATAGTTAGTACAA
AAGGAAAGTCGGTTACAGAATATAAAAATGAGGAATATCAAAGATCTGAAAGGAACAAGCGTCT
AGATGCTGATCGAAAAATTCGTCTGTCAAGCAGTTCCTCTAGAGAACCTTACAAGAGTCAACCA
GAAAAACCTTGTCTACGGAAAAGGGATTCTGAAAGAAGGGCCAAGTCTCCTACACCAGATGGTT
CTGAGAGAATTGGGCTTGAAGTTGATAGACGTGCAAGCAGATCCAGCCAGTCTTCAAAGGAAGA
GGGGAACTCTGAGGAGTATGGCTCTGACCACGAGACAGGAAGCAGTGCTTCTTCTGAACAGGGC
AACAACACTGAGAATGAGGAGGAAGGAGGGGAAGAAGATGTAGAGGAAGATGAAGAGGTAGATG
AAGATGGAGATGATGATGAGGAAGTGGATGAAGATGCGGAGGAGGAGGAGGACGAGGAAGAAGA
TGAGGAGGAGGAGGATGAGGAAGAAGAAGAGGAAGAGGAAGAAGAATATGAACAGGATGAGAGA
GATCAGAAGGAAGAAGGGAATGATTATGACACCCGTAGTGAGGCCAGTGATTCTGGTTCTGAGT
CTGTTTCCTTCACAGATGGATCTGTCAGGTCTGGTTCAGGAACAGATGGATCAGATGAGAAAAA
GAAGGAAAGGAAGAGAGCTCGAGGCATATCACCCATTGTCTTTGATAGAAGTGGCAGTTCTGCA
TCAGAGTCATATGCAGGTTCAGAAAAGAAGCATGAGAAATTATCATCTTCCGTTCGTGCTGTCC
GAAAAGATCAAACCAGTAAACTCAAATATGTCCTTCAGGATGCAAGATTTTTCCTCATAAAGAG
TAACAACCATGAGAATGTGTCTCTTGCCAAAGCAAAGGGTGTATGGTCCACATTACCTGTAAAT
GAGAAGAAATTAAATCTTGCGTTTAGATCTGCAAGGAGTGTTATATTAATATTTTCTGTCAGGG
AAAGTGGAAAGTTTCAAGGTTTTGCCAGATTGTCATCAGAATCGCATCATGGTGGCTCTCCTAT
ACATTGGGTGCTTCCAGCAGGAATGAGTGCTAAAATGCTTGGAGGTGTTTTTAAAATTGACTGG
ATTTGCAGGCGTGAATTACCCTTTACTAAGTCAGCTCATCTCACCAATCCCTGGAATGAACATA
AGCCAGTAAAGATTGGACGTGATGGACAGGAAATTGAACTTGAATGTGGAACCCAGCTTTGTCT
TCTGTTTCCCCCTGATGAAAGTATTGACTTGTATCAGCTCATTCATAAAATGCGTCACAAGAGA
AGAATGCATTCTCAGCCTCGATCAAGAGGACGTCCATCCCGTCGAGAACCAGTCCGGGATGTGG
GAAGGCGTCGACCAGAAGATTATGATATTCATAACAGCAGAAAGAAACCAAGGATTGACTATCC
CCCTGAGTTTCACCAGAGACCAGGGTATTTAAAGGATCCCCGATACCAGGAAGTTGACAGACGA
TTTTCAGGAGTTCGCCGAGATGTGTTTTTAAATGGGTCCTACAATGATTATGTGAGGGAATTTC
ATAACATGGGACCACCGCCTCCTTGGCAAGGAATGCCTCCTTACCCGGGAATAGAACAGCCTCC
ACACCATCCCTACTACCAGCACCATGCCCCGCCTCCTCAAGCCCACCCCCCTTACTCAGGACAC
CATCCGGTACCACATGAAGCAAGATACAGAGATAAACGAGTACATGACTATGATATGAGGGTTG
ATGATTTCCTTCGCCGCACACAAGCCGTTGTCAGTGGTCGGAGAAGTAGACCCCGAGAAAGAGA
TCGGGAGCGAGAGCGAGACCGCCCTAGAGATAACAGAAGAGATAGAGAGCGAGACAGAGGTCGT
GATCGAGAAAGAGAGAGAGAAAGAATATGTGATCGGGACAGAGACCGAGGGGAAAGAGGTCGTT
ATCGAAGATAATGTGCTTTTTGGAAGCACTGACTGAAGATAAAAAATATTGTATTTTTTTTGTG
TGTGTTTACAAGTAGTAAATTTATTTTCAGCTGTCTACTTAAAGCTCATTGTGTAGAAGGATTT
ATTATCTTCTTTGTTCCAAGCATGCAGTAGAATAAGAACTGGAAAACTCAGATCCGCCAAAAAA
TGCACAGTTGACAGTTGAGTTGACACTTTTATTGGGGCAGAATGGAACAGTCCAAGAATGTAGA
TATTGATTCATTCTCCATAAATGTTCTTTTTACAGTGTATTCATCCTAGAGTTATTTTGTTTGT
TTGTTTTCCTTCTTTTGGACCTTGGTCAATACTGCCATAGTATTTTGCTTTGTGTTTCTATAGG
TAGCTGCACACGGTTCAGTAAAAATAATGCTGCTATCAAGTATGCAGATATTGAGTATGATGGT
TTGACTATATGGCAGTGTTGTAGCAGCCTCTCGGTTTCTCCTCTTCCCTCCTTTTTTTTAAACC
TATAAATCCACTTTTTTTTTAAGTCTTCAATGATGAGAGCAATATTAAGAAGACATTGCTATCT
AATTTTTAATCTTTTTAAATAAAACGTTCCTATGTTCAGTAGCATGGTCGATGCTATTGTTTAG
CCTTCCTTCCAAACTGTACATTGGCTTGGAATGTTCAGTTTTGCGTGTGTGGCAGCAGAAGATA
ACCCCACATTCTACATTGCTACTGTTTTGTATGAAATAAATTGGTAAAGATTGACACTAA

hide sequence

RefSeq Acc Id:

XM_006250808 ⟹ XP_006250870

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,185,438 - 21,215,931 (-)	NCBI
Rnor_6.0	14	22,971,834 - 23,002,325 (-)	NCBI
Rnor_5.0	14	22,869,117 - 22,899,637 (-)	NCBI

Sequence:

show sequence

TTTCGCGCAGGAAGCAGGCTCCATTTTAGCGCCGCCCGCCGTCGCCATCTGTTTCTCTCTCCTC
CCCCTTGTCTCTGGTGTGGCCGAATCCCCAACAGAAAGATTGAAGCCCGCGCTGTCCGAGGTCA
GGCGGGAAGAGAACCAGAGGACGGGAGGAAGGGTGCTCGTAGGAGCTGAGTGGAGCAGGTCAGG
TCGAAGCGCGCGGCCCGCCGGACGGACTGACGGACGGACTCGTGCGCCTGCGGCCGCGGCTGCG
GCGCCCGCGCGACTCGCTTCCCGGCGGCGGTGGCGGCGGCGGAAGCCGGAGGGCAGCCATGGCG
GCCGACAGCCGGGAGGAGAAAGATGGGGAACTTAATGTTTTAGATGATATTTTGACTGAAGTAC
CAGAACAGGATGATGAACTGTATAATCCAGAGAGTGAACAAGATAAAAATGAGAAAAAAGGATC
AAAAAGAAAAAGTGAAAGAATGGAATCTATTGACACCAAGCGACAGAAGCCTTCTATCCATTCA
AGACAACTGATTTCTAAGCCACTAAGCTCATCTGTTAGCAATAATAAAAGAATAGTTAGTACAA
AAGGAAAGTCGGTTACAGAATATAAAAATGAGGAATATCAAAGATCTGAAAGGAACAAGCGTCT
AGATGCTGATCGAAAAATTCGTCTGTCAAGCAGTTCCTCTAGAGAACCTTACAAGAGTCAACCA
GAAAAACCTTGTCTACGGAAAAGGGATTCTGAAAGAAGGGCCAAGTCTCCTACACCAGATGGTT
CTGAGAGAATTGGGCTTGAAGTTGATAGACGTGCAAGCAGATCCAGCCAGTCTTCAAAGGAAGA
GGGGAACTCTGAGGAGTATGGCTCTGACCACGAGACAGGAAGCAGTGCTTCTTCTGAACAGGGC
AACAACACTGAGAATGAGGAGGAAGGAGGGGAAGAAGATGTAGAGGAAGATGAAGAGGTAGATG
AAGATGGAGATGATGATGAGGAAGTGGATGAAGATGCGGAGGAGGAGGAGGACGAGGAAGAAGA
TGAGGAGGAGGAGGATGAGGAAGAAGAAGAGGAAGAGGAAGAAGAATATGAACAGGATGAGAGA
GATCAGAAGGAAGAAGGGAATGATTATGACACCCGTAGTGAGGCCAGTGATTCTGGTTCTGAGT
CTGTTTCCTTCACAGATGGATCTGTCAGGTCTGGTTCAGGAACAGATGGATCAGATGAGAAAAA
GAAGGAAAGGAAGAGAGCTCGAGGCATATCACCCATTGTCTTTGATAGAAGTGGCAGTTCTGCA
TCAGAGTCATATGCAGATCAAACCAGTAAACTCAAATATGTCCTTCAGGATGCAAGATTTTTCC
TCATAAAGAGTAACAACCATGAGAATGTGTCTCTTGCCAAAGCAAAGGGTGTATGGTCCACATT
ACCTGTAAATGAGAAGAAATTAAATCTTGCGTTTAGATCTGCAAGGAGTGTTATATTAATATTT
TCTGTCAGGGAAAGTGGAAAGTTTCAAGGTTTTGCCAGATTGTCATCAGAATCGCATCATGGTG
GCTCTCCTATACATTGGGTGCTTCCAGCAGGAATGAGTGCTAAAATGCTTGGAGGTGTTTTTAA
AATTGACTGGATTTGCAGGCGTGAATTACCCTTTACTAAGTCAGCTCATCTCACCAATCCCTGG
AATGAACATAAGCCAGTAAAGATTGGACGTGATGGACAGGAAATTGAACTTGAATGTGGAACCC
AGCTTTGTCTTCTGTTTCCCCCTGATGAAAGTATTGACTTGTATCAGCTCATTCATAAAATGCG
TCACAAGAGAAGAATGCATTCTCAGCCTCGATCAAGAGGACGTCCATCCCGTCGAGAACCAGTC
CGGGATGTGGGAAGGCGTCGACCAGAAGATTATGATATTCATAACAGCAGAAAGAAACCAAGGA
TTGACTATCCCCCTGAGTTTCACCAGAGACCAGGGTATTTAAAGGATCCCCGATACCAGGAAGT
TGACAGACGATTTTCAGGAGTTCGCCGAGATGTGTTTTTAAATGGGTCCTACAATGATTATGTG
AGGGAATTTCATAACATGGGACCACCGCCTCCTTGGCAAGGAATGCCTCCTTACCCGGGAATAG
AACAGCCTCCACACCATCCCTACTACCAGCACCATGCCCCGCCTCCTCAAGCCCACCCCCCTTA
CTCAGGACACCATCCGGTACCACATGAAGCAAGATACAGAGATAAACGAGTACATGACTATGAT
ATGAGGGTTGATGATTTCCTTCGCCGCACACAAGCCGTTGTCAGTGGTCGGAGAAGTAGACCCC
GAGAAAGAGATCGGGAGCGAGAGCGAGACCGCCCTAGAGATAACAGAAGAGATAGAGAGCGAGA
CAGAGGTCGTGATCGAGAAAGAGAGAGAGAAAGAATATGTGATCGGGACAGAGACCGAGGGGAA
AGAGGTCGTTATCGAAGATAATGTGCTTTTTGGAAGCACTGACTGAAGATAAAAAATATTGTAT
TTTTTTTGTGTGTGTTTACAAGTAGTAAATTTATTTTCAGCTGTCTACTTAAAGCTCATTGTGT
AGAAGGATTTATTATCTTCTTTGTTCCAAGCATGCAGTAGAATAAGAACTGGAAAACTCAGATC
CGCCAAAAAATGCACAGTTGACAGTTGAGTTGACACTTTTATTGGGGCAGAATGGAACAGTCCA
AGAATGTAGATATTGATTCATTCTCCATAAATGTTCTTTTTACAGTGTATTCATCCTAGAGTTA
TTTTGTTTGTTTGTTTTCCTTCTTTTGGACCTTGGTCAATACTGCCATAGTATTTTGCTTTGTG
TTTCTATAGGTAGCTGCACACGGTTCAGTAAAAATAATGCTGCTATCAAGTATGCAGATATTGA
GTATGATGGTTTGACTATATGGCAGTGTTGTAGCAGCCTCTCGGTTTCTCCTCTTCCCTCCTTT
TTTTTAAACCTATAAATCCACTTTTTTTTTAAGTCTTCAATGATGAGAGCAATATTAAGAAGAC
ATTGCTATCTAATTTTTAATCTTTTTAAATAAAACGTTCCTATGTTCAGTAGCATGGTCGATGC
TATTGTTTAGCCTTCCTTCCAAACTGTACATTGGCTTGGAATGTTCAGTTTTGCGTGTGTGGCA
GCAGAAGATAACCCCACATTCTACATTGCTACTGTTTTGTATGAAATAAATTGGTAAAGATTGA
CACTAA

hide sequence

RefSeq Acc Id:

XM_008769990 ⟹ XP_008768212

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,186,280 - 21,215,934 (-)	NCBI
Rnor_6.0	14	22,972,725 - 22,998,891 (-)	NCBI

Sequence:

show sequence

ACACAGACAAAATACACTGTCTCATGTAGAAGAATGGTGTCTTTAATGACCGAAATATATTTTA
GGGATTATCCTGATGTAAATGTATTTTGCTTCATAGCAAAAGGAGAGATTGCTGGACATCTTGT
TGCTGTGTTTTACCTCGATGAAACTGAATAAGTGAATTGAAGAAAAATGACTGATTCCTTGCAT
GGGTTTGAAAACATGTATTTAACATCTCAGTTTTCTTTAAGTTACTCTTGATCTGATGCTGAAG
GCTGAAATAAATAATATTTTGTACAGGTTTACCTTTAATCTGTGTTCCACATAGAGGTTACTCT
GTTAAACCAATCTTTCTGGAGTTAAGGTTTATGACCTCTCCATGTAGAGTTGTGAGATTTGGTT
AGGTCGTTTAAATTCTTGGAATTTCATTTTAGAATTACTCTCGCAAGATATAACCATCTAAGGC
TAAGCAACTCTGAAAATCCTGCTTCTATTTCTTTCTAAAATGCCACAAGCAAAATTACCAGCCT
TGTTACTTCTAATCTTTTCGAAGTCAAAACTTGGCTCCAAGAACAGTGATTCTTGTTTGTATTA
CTTTGTTTTACCTCCTCTACCTGGACATTGTAACTTTATCTCAAAACTCAGTTTGCTGTCGTTA
ACAGTGATTTCTGTATATGAAAGATAATATAAATATAAAGCATTTGCAGATAATTTTCTTTCTG
TAGAGGAGTTACTAAAGAAAAAAAGAGTAGTTAGTTTCAAAAGATTAATTTGAGAAAATTGAAG
CATCCTTTAAAAAGTAACACTATCCTAAGTAAAATTTGGGTTTGCAAATGTTGAAAATTTGCAA
GATAGTAAAAGTACTTGGATTTTGTTAAGGCAGTCTACTAGGATTGCTTAGAATTGTCTTTTTT
TCTCTGTACTTTTACAATATAGTCATGCACCCTCCCTCAATATTTGAATCAGTGTGAATTGCTT
GCATGATGGGATCCCAGAAGATTTACCTTATATTATACTTATCTTCGTGTGTGAGGGCATGATC
TTTACAAGATGCCAAAACTAGTATGTAGAGATCGCTGCACATTTCTCAGGATGTAGCCTCATTG
ATAACATGAATGTATTAACCCAAACAGAACTTTGAGTCTCCTGTGCCTCAATGCCAATTGAACT
GAACCTTGAGGTACTCTTGCATTGCATCAGCATATTTCATACCTAGGATACGGCAGATAAAGTA
CTGCTAAACAAGAGGCAACACTCTTGTCTTTAGAGATCCCAGCATGGCTTGGGTTCAGACAGTA
TTACTTAATAGTTTCATTACCATAAACCTAGAGCACCTCATGCAAAGCCTTGACATGTTACCTT
CTCTGTCTTTAACAGAAGATTGCCAAGACTGCTCCAGCTGGTTGTTTTCAGATGGGGAACTTAA
TGTTTTAGATGATATTTTGACTGAAGTACCAGAACAGGATGATGAACTGTATAATCCAGAGAGT
GAACAAGATAAAAATGAGAAAAAAGGATCAAAAAGAAAAAGTGAAAGAATGGAATCTATTGACA
CCAAGCGACAGAAGCCTTCTATCCATTCAAGACAACTGATTTCTAAGCCACTAAGCTCATCTGT
TAGCAATAATAAAAGAATAGTTAGTACAAAAGGAAAGTCGGTTACAGAATATAAAAATGAGGAA
TATCAAAGATCTGAAAGGAACAAGCGTCTAGATGCTGATCGAAAAATTCGTCTGTCAAGCAGTT
CCTCTAGAGAACCTTACAAGAGTCAACCAGAAAAACCTTGTCTACGGAAAAGGGATTCTGAAAG
AAGGGCCAAGTCTCCTACACCAGATGGTTCTGAGAGAATTGGGCTTGAAGTTGATAGACGTGCA
AGCAGATCCAGCCAGTCTTCAAAGGAAGAGGGGAACTCTGAGGAGTATGGCTCTGACCACGAGA
CAGGAAGCAGTGCTTCTTCTGAACAGGGCAACAACACTGAGAATGAGGAGGAAGGAGGGGAAGA
AGATGTAGAGGAAGATGAAGAGGTAGATGAAGATGGAGATGATGATGAGGAAGTGGATGAAGAT
GCGGAGGAGGAGGAGGACGAGGAAGAAGATGAGGAGGAGGAGGATGAGGAAGAAGAAGAGGAAG
AGGAAGAAGAATATGAACAGGATGAGAGAGATCAGAAGGAAGAAGGGAATGATTATGACACCCG
TAGTGAGGCCAGTGATTCTGGTTCTGAGTCTGTTTCCTTCACAGATGGATCTGTCAGGTCTGGT
TCAGGAACAGATGGATCAGATGAGAAAAAGAAGGAAAGGAAGAGAGCTCGAGGCATATCACCCA
TTGTCTTTGATAGAAGTGGCAGTTCTGCATCAGAGTCATATGCAGGTTCAGAAAAGAAGCATGA
GAAATTATCATCTTCCGTTCGTGCTGTCCGAAAAGATCAAACCAGTAAACTCAAATATGTCCTT
CAGGATGCAAGATTTTTCCTCATAAAGAGTAACAACCATGAGAATGTGTCTCTTGCCAAAGCAA
AGGGTGTATGGTCCACATTACCTGTAAATGAGAAGAAATTAAATCTTGCGTTTAGATCTGCAAG
GAGTGTTATATTAATATTTTCTGTCAGGGAAAGTGGAAAGTTTCAAGGTTTTGCCAGATTGTCA
TCAGAATCGCATCATGGTGGCTCTCCTATACATTGGGTGCTTCCAGCAGGAATGAGTGCTAAAA
TGCTTGGAGGTGTTTTTAAAATTGACTGGATTTGCAGGCGTGAATTACCCTTTACTAAGTCAGC
TCATCTCACCAATCCCTGGAATGAACATAAGCCAGTAAAGATTGGACGTGATGGACAGGAAATT
GAACTTGAATGTGGAACCCAGCTTTGTCTTCTGTTTCCCCCTGATGAAAGTATTGACTTGTATC
AGCTCATTCATAAAATGCGTCACAAGAGAAGAATGCATTCTCAGCCTCGATCAAGAGGACGTCC
ATCCCGTCGAGAACCAGTCCGGGATGTGGGAAGGCGTCGACCAGAAGATTATGATATTCATAAC
AGCAGAAAGAAACCAAGGATTGACTATCCCCCTGAGTTTCACCAGAGACCAGGGTATTTAAAGG
ATCCCCGATACCAGGAAGTTGACAGTTTCACAAATCTTATTCCCAACAGACGATTTTCAGGAGT
TCGCCGAGATGTGTTTTTAAATGGGTCCTACAATGATTATGTGAGGGAATTTCATAACATGGGA
CCACCGCCTCCTTGGCAAGGAATGCCTCCTTACCCGGGAATAGAACAGCCTCCACACCATCCCT
ACTACCAGCACCATGCCCCGCCTCCTCAAGCCCACCCCCCTTACTCAGGACACCATCCGGTACC
ACATGAAGCAAGATACAGAGATAAACGAGTAGTAAGTGCACAAGGAGGCAGAGGTGTGAGGGAA
CTACTTAGAATTTCTGTAGCATGACTATGATATGAGGGTTGATGATTTCCTTCGCCGCACACAA
GCCGTTGTCAGTGGTCGGAGAAGTAGACCCCGAGAAAGAGAT

hide sequence

RefSeq Acc Id:

XM_039091590 ⟹ XP_038947518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,185,438 - 21,215,930 (-)	NCBI

RefSeq Acc Id:

XM_039091591 ⟹ XP_038947519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,185,438 - 21,215,931 (-)	NCBI

RefSeq Acc Id:

XM_039091592 ⟹ XP_038947520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,185,438 - 21,215,931 (-)	NCBI

RefSeq Acc Id:

XM_039091594 ⟹ XP_038947522

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,547,509 - 21,570,724 (-)	NCBI
mRatBN7.2	14	21,192,762 - 21,215,933 (-)	NCBI

RefSeq Acc Id:

XM_063272837 ⟹ XP_063128907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI

RefSeq Acc Id:

XM_063272838 ⟹ XP_063128908

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	21,540,276 - 21,570,724 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001424131	(Get FASTA)	NCBI Sequence Viewer
	NP_001424132	(Get FASTA)	NCBI Sequence Viewer
	NP_001424133	(Get FASTA)	NCBI Sequence Viewer
	NP_001424134	(Get FASTA)	NCBI Sequence Viewer
	NP_001424135	(Get FASTA)	NCBI Sequence Viewer
	NP_001424136	(Get FASTA)	NCBI Sequence Viewer
	NP_596914	(Get FASTA)	NCBI Sequence Viewer
	XP_006250867	(Get FASTA)	NCBI Sequence Viewer
	XP_006250868	(Get FASTA)	NCBI Sequence Viewer
	XP_006250870	(Get FASTA)	NCBI Sequence Viewer
	XP_008768212	(Get FASTA)	NCBI Sequence Viewer
	XP_038947518	(Get FASTA)	NCBI Sequence Viewer
	XP_038947519	(Get FASTA)	NCBI Sequence Viewer
	XP_038947520	(Get FASTA)	NCBI Sequence Viewer
	XP_038947522	(Get FASTA)	NCBI Sequence Viewer
	XP_063128907	(Get FASTA)	NCBI Sequence Viewer
	XP_063128908	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD55973	(Get FASTA)	NCBI Sequence Viewer
	BAA23885	(Get FASTA)	NCBI Sequence Viewer
	EDL89828	(Get FASTA)	NCBI Sequence Viewer
	EDL89829	(Get FASTA)	NCBI Sequence Viewer
	EDL89830	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000080807
	ENSRNOP00000080807.1
	ENSRNOP00000087598
	ENSRNOP00000095873
	ENSRNOP00000095873.1
GenBank Protein	Q9QY02	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_596914 ⟸ NM_133423

- UniProtKB:

G3V690 (UniProtKB/Swiss-Prot), Q9QY02 (UniProtKB/Swiss-Prot), O54729 (UniProtKB/Swiss-Prot), A0A8I5XW12 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSERMESIDTKRQKPSI
HSRQLISKPLSSSVSNNKRIVSTKGKSVTEYKNEEYQRSERNKRLDADRKIRLSSSSSREPYKS
QPEKPCLRKRDSERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEGNSEEYGSDHETGSSASSE
QGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEEEYEQD
ERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGS
SASESYAGSEKKHEKLSSSVRAVRKDQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLP
VNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKI
DWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRH
KRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVD
SFTNLIPNRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPP
PQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDN
RRDRERDRGRDRERERERICDRDRDRGERGRYRR

hide sequence

RefSeq Acc Id:

XP_006250867 ⟸ XM_006250805

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAADSREEKEDCQDCSSWLFSDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSERM
ESIDTKRQKPSIHSRQLISKPLSSSVSNNKRIVSTKGKSVTEYKNEEYQRSERNKRLDADRKIR
LSSSSSREPYKSQPEKPCLRKRDSERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEGNSEEYG
SDHETGSSASSEQGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEE
EEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRAR
GISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVS
LAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAG
MSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDES
IDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRP
GYLKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQP
PHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRER
DRERERDRPRDNRRDRERDRGRDRERERERICDRDRDRGERGRYRR

hide sequence

RefSeq Acc Id:

XP_006250870 ⟸ XM_006250808

- Peptide Label:

isoform X7

- Sequence:

show sequence

MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSERMESIDTKRQKPSI
HSRQLISKPLSSSVSNNKRIVSTKGKSVTEYKNEEYQRSERNKRLDADRKIRLSSSSSREPYKS
QPEKPCLRKRDSERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEGNSEEYGSDHETGSSASSE
QGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEEEYEQD
ERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGS
SASESYADQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVIL
IFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTN
PWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRRE
PVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYND
YVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHD
YDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERICDRDRDR
GERGRYRR

hide sequence

RefSeq Acc Id:

XP_006250868 ⟸ XM_006250806

- Peptide Label:

isoform X4

- Sequence:

show sequence

MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSERMESIDTKRQKPSI
HSRQLISKPLSSSVSNNKRIVSTKGKSVTEYKNEEYQRSERNKRLDADRKIRLSSSSSREPYKS
QPEKPCLRKRDSERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEGNSEEYGSDHETGSSASSE
QGNNTENEEEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEEEYEQD
ERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGS
SASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLP
VNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKI
DWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRH
KRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVD
RRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYS
GHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDR
GRDRERERERICDRDRDRGERGRYRR

hide sequence

RefSeq Acc Id:	XP_008768212 ⟸ XM_008769990
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5XW12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAWVQTVLLNSFITINLEHLMQSLDMLPSLSLTEDCQDCSSWLFSDGELNVLDDILTEVPEQDD ELYNPESEQDKNEKKGSKRKSERMESIDTKRQKPSIHSRQLISKPLSSSVSNNKRIVSTKGKSV TEYKNEEYQRSERNKRLDADRKIRLSSSSSREPYKSQPEKPCLRKRDSERRAKSPTPDGSERIG LEVDRRASRSSQSSKEEGNSEEYGSDHETGSSASSEQGNNTENEEEGGEEDVEEDEEVDEDGDD DEEVDEDAEEEEDEEEDEEEEDEEEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFT DGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQT SKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKF QGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKI GRDGQEIELECGTQLCLLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRP EDYDIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDYV REFHNMGPPPPWQGMPPYPGIEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVVSAQ GGRGVRELLRISVA hide sequence

Ensembl Acc Id:

ENSRNOP00000002736 ⟸ ENSRNOT00000002736

RefSeq Acc Id:	XP_038947520 ⟸ XM_039091592
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038947519 ⟸ XM_039091591
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5XW12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947518 ⟸ XM_039091590
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038947522 ⟸ XM_039091594
- Peptide Label:	isoform X10

Ensembl Acc Id:

ENSRNOP00000077334 ⟸ ENSRNOT00000107561

Ensembl Acc Id:

ENSRNOP00000087598 ⟸ ENSRNOT00000118221

Ensembl Acc Id:

ENSRNOP00000095873 ⟸ ENSRNOT00000119155

Ensembl Acc Id:

ENSRNOP00000080807 ⟸ ENSRNOT00000110796

RefSeq Acc Id:	XP_063128907 ⟸ XM_063272837
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063128908 ⟸ XM_063272838
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5XW12 (UniProtKB/TrEMBL)

Protein Domains

YTH

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9QY02-F1-model_v2	AlphaFold	Q9QY02	1-738	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621706	AgrOrtholog
BioCyc Gene	G2FUF-16088	BioCyc
Ensembl Genes	ENSRNOG00000001996	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000110796	ENTREZGENE
	ENSRNOT00000110796.1	UniProtKB/Swiss-Prot
	ENSRNOT00000118221	ENTREZGENE
	ENSRNOT00000119155	ENTREZGENE
	ENSRNOT00000119155.1	UniProtKB/Swiss-Prot
Gene3D-CATH	ph1033 like domains	UniProtKB/Swiss-Prot
InterPro	YTH_domain	UniProtKB/Swiss-Prot
	YTH_prot	UniProtKB/Swiss-Prot
KEGG Report	rno:170956	UniProtKB/Swiss-Prot
NCBI Gene	170956	ENTREZGENE
PANTHER	PTHR12357	UniProtKB/Swiss-Prot
	YTH DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	YTH	UniProtKB/Swiss-Prot
PhenoGen	Ythdc1	PhenoGen
PROSITE	YTH	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001996	RatGTEx
UniProt	A0A8I5XW12	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GG56	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2Q1B1_RAT	UniProtKB/TrEMBL
	A6JCQ7	ENTREZGENE, UniProtKB/TrEMBL
	G3V690	ENTREZGENE
	O54729	ENTREZGENE
	Q9QY02	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	G3V690	UniProtKB/Swiss-Prot
	O54729	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-03-09	Ythdc1	YTH N6-methyladenosine RNA binding protein C1	Ythdc1	YTH domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2010-05-05	Ythdc1	YTH domain containing 1	Yt521	splicing factor YT521-B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-07-08	Yt521	splicing factor YT521-B	YT521		Symbol updated	1299863	APPROVED
2002-08-07	YT521	splicing factor YT521-B			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to nuclear dots and to the cytoplasm	634512

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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