Advanced Search (OLGA)

Gene: Chtop (chromatin target of PRMT1) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Chtop

Name:

chromatin target of PRMT1

RGD ID:

1359407

Description:

Predicted to enable methyl-CpG binding activity. Predicted to be involved in chromatin remodeling; mRNA export from nucleus; and positive regulation of helicase activity. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in nucleolus. Predicted to be part of transcription export complex. Predicted to be active in nuclear speck. Orthologous to human CHTOP (chromatin target of PRMT1); INTERACTS WITH atrazine; bisphenol A; fipronil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

chromatin target of PRMT1 protein; Fop; Friend of PRMT1 protein; hypothetical protein LOC361990; LOC361990; similar to DKFZP547E1010 protein; small arginine- and glycine-rich protein; SRAG

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHTOP (chromatin target of PRMT1)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHTOP (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHTOP (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHTOP (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHTOP (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chtop (chromatin target of PRMT1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PGPEP1 (pyroglutamyl-peptidase I)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CHTOP (chromatin target of PRMT1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Chtop (chromatin target of PRMT1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	chtopa (chromatin target of PRMT1a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chtop	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI		GRCr8
mRatBN7.2	2	175,981,266 - 175,992,820 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,981,271 - 175,992,748 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,121,379 - 183,132,881 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,143,642 - 181,155,144 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,743,986 - 175,755,485 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,887,850 - 189,900,079 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,887,857 - 189,899,325 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,318,314 - 209,330,501 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,772,001 - 182,783,476 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,722,109 - 182,733,582 (-)	NCBI
Celera	2	169,916,772 - 169,928,245 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Chtop	Rat	gastrointestinal stromal tumor		ISO	RGD:1607051	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Chtop	Rat	immunodeficiency 42		ISO	RGD:1607051	8554872	ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete more ...	ClinVar	PMID:28492532
Chtop	Rat	MHC class II deficiency		ISO	RGD:1607051	8554872	ClinVar Annotator: match by term: MHC class II deficiency	ClinVar	PMID:28492532
Chtop	Rat	parathyroid carcinoma		ISO	RGD:1607051	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532
Chtop	Rat	severe congenital neutropenia 3		ISO	RGD:1607051	8554872	ClinVar Annotator: match by term: Kostmann syndrome	ClinVar	PMID:28492532
Chtop	Rat	severe congenital neutropenia 5		ISO	RGD:1607051	8554872	ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndrome	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Chtop	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	RGD:1622332	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CHTOP mRNA	CTD	PMID:22206623
Chtop	Rat	17beta-estradiol	multiple interactions	ISO	RGD:1622332	6480464	[Polyphenols co-treated with Estradiol] results in decreased expression of CHTOP mRNA	CTD	PMID:30077407
Chtop	Rat	17beta-estradiol	increases expression	ISO	RGD:1622332	6480464	Estradiol results in increased expression of CHTOP mRNA	CTD	PMID:30077407
Chtop	Rat	2-palmitoylglycerol	increases expression	ISO	RGD:1607051	6480464	2-palmitoylglycerol results in increased expression of CHTOP mRNA	CTD	PMID:37199045
Chtop	Rat	4,4'-sulfonyldiphenol	affects expression	ISO	RGD:1607051	6480464	bisphenol S affects the expression of CHTOP protein	CTD	PMID:31945527
Chtop	Rat	arsenous acid	increases expression	ISO	RGD:1607051	6480464	Arsenic Trioxide results in increased expression of CHTOP mRNA	CTD	PMID:25258189
Chtop	Rat	atrazine	affects methylation	EXP		6480464	Atrazine affects the methylation of CHTOP gene	CTD	PMID:28931070
Chtop	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1607051	6480464	Benzo(a)pyrene affects the methylation of CHTOP 5' UTR	CTD	PMID:27901495
Chtop	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CHTOP mRNA	CTD	PMID:25181051
Chtop	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CHTOP mRNA	CTD	PMID:34947998
Chtop	Rat	bisphenol A	increases expression	ISO	RGD:1622332	6480464	bisphenol A results in increased expression of CHTOP mRNA	CTD	PMID:33221593
Chtop	Rat	bisphenol A	decreases expression	ISO	RGD:1607051	6480464	bisphenol A results in decreased expression of CHTOP mRNA	CTD	PMID:29275510
Chtop	Rat	cadmium dichloride	decreases expression	ISO	RGD:1607051	6480464	Cadmium Chloride results in decreased expression of CHTOP mRNA	CTD	PMID:38382870
Chtop	Rat	carbamazepine	affects expression	ISO	RGD:1607051	6480464	Carbamazepine affects the expression of CHTOP mRNA	CTD	PMID:25979313
Chtop	Rat	cisplatin	multiple interactions	ISO	RGD:1607051	6480464	[Cisplatin co-treated with jinfukang] results in decreased expression of CHTOP mRNA	CTD	PMID:27392435
Chtop	Rat	crocidolite asbestos	decreases expression	ISO	RGD:1622332	6480464	Asbestos, Crocidolite results in decreased expression of CHTOP mRNA	CTD	PMID:29279043
Chtop	Rat	cyclosporin A	increases expression	ISO	RGD:1607051	6480464	Cyclosporine results in increased expression of CHTOP mRNA	CTD	PMID:25562108
Chtop	Rat	diarsenic trioxide	increases expression	ISO	RGD:1607051	6480464	Arsenic Trioxide results in increased expression of CHTOP mRNA	CTD	PMID:25258189
Chtop	Rat	diazinon	increases methylation	ISO	RGD:1607051	6480464	Diazinon results in increased methylation of CHTOP gene	CTD	PMID:22964155
Chtop	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1607051	6480464	di-n-butylphosphoric acid affects the expression of CHTOP mRNA	CTD	PMID:37042841
Chtop	Rat	ethanol	multiple interactions	ISO	RGD:1622332	6480464	Ethanol affects the expression of and affects the splicing of CHTOP mRNA	CTD	PMID:30319688
Chtop	Rat	fipronil	increases expression	EXP		6480464	fipronil results in increased expression of CHTOP mRNA	CTD	PMID:23962444
Chtop	Rat	folic acid	multiple interactions	ISO	RGD:1622332	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CHTOP mRNA	CTD	PMID:22206623
Chtop	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of CHTOP mRNA	CTD	PMID:33387578
Chtop	Rat	isobutanol	multiple interactions	ISO	RGD:1607051	6480464	[[Gasoline co-treated with isobutyl alcohol] results in increased abundance of [Particulate Matter co-treated with Polycyclic more ...	CTD	PMID:29432896
Chtop	Rat	ivermectin	decreases expression	ISO	RGD:1607051	6480464	Ivermectin results in decreased expression of CHTOP protein	CTD	PMID:32959892
Chtop	Rat	mono(2-ethylhexyl) phthalate	decreases expression	ISO	RGD:1607051	6480464	mono-(2-ethylhexyl)phthalate results in decreased expression of CHTOP mRNA	CTD	PMID:38685446
Chtop	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	RGD:1622332	6480464	[perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of CHTOP mRNA	CTD	PMID:36331819
Chtop	Rat	resveratrol	multiple interactions	ISO	RGD:1607051	6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of CHTOP mRNA	CTD	PMID:23557933
Chtop	Rat	SB 431542	multiple interactions	ISO	RGD:1607051	6480464	[LDN 193189 co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide co-treated with FGF2 protein] results in decreased expression of CHTOP more ...	CTD	PMID:37664457
Chtop	Rat	senecionine	decreases expression	ISO	RGD:1622332	6480464	senecionine results in decreased expression of CHTOP protein	CTD	PMID:35357534
Chtop	Rat	sodium arsenite	multiple interactions	ISO	RGD:1607051	6480464	sodium arsenite promotes the reaction [CHTOP protein binds to CAPRIN1 protein]	CTD	PMID:33939924
Chtop	Rat	triphenyl phosphate	affects expression	ISO	RGD:1607051	6480464	triphenyl phosphate affects the expression of CHTOP mRNA	CTD	PMID:37042841
Chtop	Rat	valproic acid	affects expression	ISO	RGD:1607051	6480464	Valproic Acid affects the expression of CHTOP mRNA	CTD	PMID:25979313
Chtop	Rat	valproic acid	decreases expression	ISO	RGD:1607051	6480464	Valproic Acid results in decreased expression of CHTOP mRNA	CTD	PMID:22083351\|PMID:23179753\|PMID:27188386
Chtop	Rat	vorinostat	decreases expression	ISO	RGD:1607051	6480464	vorinostat results in decreased expression of CHTOP mRNA	CTD	PMID:22083351
Chtop	Rat	zinc atom	multiple interactions	ISO	RGD:1607051	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of CHTOP mRNA	CTD	PMID:18593933
Chtop	Rat	zinc(0)	multiple interactions	ISO	RGD:1607051	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of CHTOP mRNA	CTD	PMID:18593933

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Chtop	Rat	chromatin remodeling	involved_in	ISO	RGD:1607051	1624291	PMID:25284789	RGD	PMID:25284789
Chtop	Rat	chromatin remodeling	involved_in	IBA	PANTHER:PTN009231509\|UniProtKB:Q9Y3Y2	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Chtop	Rat	chromatin remodeling	involved_in	ISS	UniProtKB:Q9Y3Y2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Chtop	Rat	in utero embryonic development	acts_upstream_of_or_within	ISO	RGD:1622332	1624291	MGI:4842477 PMID:27996060	RGD	PMID:27996060
Chtop	Rat	mRNA export from nucleus	involved_in	ISO	RGD:1607051	1624291	PMID:23299939	RGD	PMID:23299939
Chtop	Rat	positive regulation of ATP-dependent activity	involved_in	ISO	RGD:1607051	1624291	PMID:23299939	RGD	PMID:23299939
Chtop	Rat	positive regulation of helicase activity	involved_in	ISO	RGD:1607051	1624291	PMID:23299939	RGD	PMID:23299939

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Chtop	Rat	nuclear speck	located_in	ISO	RGD:1607051\|UniProtKB:Q9Y3Y2-1\|UniProtKB:Q9Y3Y2-3	1624291		RGD	GO_REF:0000052
Chtop	Rat	nuclear speck	located_in	IEA	UniProtKB-SubCell:SL-0186	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Chtop	Rat	nuclear speck	is_active_in	IBA	PANTHER:PTN002717577\|UniProtKB:Q9Y3Y2	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Chtop	Rat	nuclear speck	located_in	ISO	RGD:1607051	1624291	PMID:23299939	RGD	PMID:23299939
Chtop	Rat	nucleolus	located_in	IEA	UniProtKB-SubCell:SL-0188	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Chtop	Rat	nucleoplasm	located_in	IEA	UniProtKB-SubCell:SL-0190	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Chtop	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Chtop	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Chtop	Rat	transcription export complex	part_of	ISO	RGD:1607051	1624291	PMID:23299939	RGD	PMID:23299939

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Chtop	Rat	methyl-CpG binding	enables	ISS	UniProtKB:Q9Y3Y2	1600115	GO_REF:0000024	UniProt	GO_REF:0000024
Chtop	Rat	methyl-CpG binding	enables	IBA	PANTHER:PTN009231509\|UniProtKB:Q9Y3Y2	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Chtop	Rat	methyl-CpG binding	enables	ISO	RGD:1607051	1624291	PMID:25284789	RGD	PMID:25284789
Chtop	Rat	protein binding	enables	ISO	RGD:1607051	1624291	UniProtKB:O14744\|UniProtKB:P78362\|UniProtKB:P84090\|UniProtKB:Q13838\|UniProtKB:Q16637\|UniProtKB:Q5VWX1\|UniProtKB:Q86V81\|UniProtKB:Q99873\|UniProtKB:Q9BQA1\|UniProtKB:Q9UBU9 PMID:14667819, PMID:19858291, PMID:23299939, PMID:23602568, PMID:25284789, PMID:25416956, PMID:30021884, PMID:32707033, PMID:33961781	RGD	PMID:14667819\|PMID:19858291\|PMID:23299939\|PMID:23602568\|PMID:25284789\|PMID:25416956\|PMID:30021884\|PMID:32707033\|PMID:33961781
Chtop	Rat	protein binding	enables	ISO	RGD:1622332	1624291	UniProtKB:Q8CIG8\|UniProtKB:Q9JIF0 PMID:19858291	RGD	PMID:19858291
Chtop	Rat	protein binding	enables	ISO	RGD:1607051,UniProtKB:Q9Y3Y2-3	1624291	UniProtKB:O00148\|UniProtKB:P09012\|UniProtKB:P84090\|UniProtKB:P98179\|UniProtKB:Q13838\|UniProtKB:Q16637\|UniProtKB:Q5VWX1\|UniProtKB:Q6NSJ2-2\|UniProtKB:Q9NRW3 PMID:32296183	RGD	PMID:32296183
Chtop	Rat	RNA binding	enables	IEA	UniProtKB-KW:KW-0694	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

PMID:15489334	PMID:22658674	PMID:22681889	PMID:23299939	PMID:25284789	PMID:27996060

Chtop
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI		GRCr8
mRatBN7.2	2	175,981,266 - 175,992,820 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	175,981,271 - 175,992,748 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	183,121,379 - 183,132,881 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	181,143,642 - 181,155,144 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	175,743,986 - 175,755,485 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	189,887,850 - 189,900,079 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	189,887,857 - 189,899,325 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	209,318,314 - 209,330,501 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	182,772,001 - 182,783,476 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	182,722,109 - 182,733,582 (-)	NCBI
Celera	2	169,916,772 - 169,928,245 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

CHTOP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	153,634,066 - 153,646,306 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	153,633,982 - 153,646,306 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	153,606,542 - 153,618,782 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	151,873,149 - 151,884,603 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	126,677,559 - 126,689,013 (+)	NCBI		Celera
Cytogenetic Map	1	q21.3	NCBI
HuRef	1	124,969,964 - 124,982,321 (+)	NCBI		HuRef
CHM1_1	1	155,002,435 - 155,014,759 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	152,771,330 - 152,783,570 (+)	NCBI		T2T-CHM13v2.0

Chtop
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	90,405,846 - 90,417,400 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	90,406,263 - 90,416,805 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	90,498,539 - 90,509,527 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	90,498,956 - 90,509,498 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	90,302,880 - 90,313,365 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	90,584,885 - 90,595,370 (-)	NCBI		MGSCv36	mm8
Celera	3	90,536,803 - 90,547,288 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	39.24	NCBI

Chtop
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955545	282,342 - 292,785 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955545	282,342 - 292,428 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	96,186,853 - 96,198,958 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	95,922,882 - 95,934,368 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	128,989,920 - 129,002,242 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	132,617,934 - 132,630,654 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	132,617,934 - 132,630,654 (+)	Ensembl	panpan1.1		panPan2

CHTOP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	43,418,902 - 43,428,012 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	43,419,707 - 43,427,856 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	42,911,925 - 42,921,035 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	43,368,614 - 43,377,725 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	43,368,614 - 43,377,583 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	43,070,678 - 43,079,784 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	43,124,385 - 43,133,500 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	43,408,041 - 43,417,155 (-)	NCBI		UU_Cfam_GSD_1.0

Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	24,404,354 - 24,414,140 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936580	3,434,773 - 3,445,080 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936580	3,436,260 - 3,444,522 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHTOP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	95,994,263 - 96,005,585 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	95,996,030 - 96,006,511 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	104,889,209 - 104,898,793 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHTOP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	10,159,463 - 10,170,949 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	10,154,734 - 10,170,883 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	9,536,012 - 9,548,571 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chtop
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624885	3,501,470 - 3,511,451 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624885	3,501,468 - 3,511,481 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Chtop
26 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	61
Count of miRNA genes:	27
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000010455, ENSRNOT00000017561
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	172710921	184114403	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	174930955	213594495	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001014175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006232710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_591191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010455 ⟹ ENSRNOP00000010455

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,982,442 - 175,992,748 (-)	Ensembl
Rnor_6.0 Ensembl	2	189,888,833 - 189,899,103 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000017561 ⟹ ENSRNOP00000017561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	175,981,271 - 175,992,742 (-)	Ensembl
Rnor_6.0 Ensembl	2	189,887,857 - 189,899,325 (-)	Ensembl

RefSeq Acc Id:

NM_001014175 ⟹ NP_001014197

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,290,348 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,767 (-)	NCBI
Rnor_6.0	2	189,887,850 - 189,899,325 (-)	NCBI
Rnor_5.0	2	209,318,314 - 209,330,501 (-)	NCBI
RGSC_v3.4	2	182,772,001 - 182,783,476 (-)	RGD
Celera	2	169,916,772 - 169,928,245 (-)	RGD

Sequence:

show sequence

CAAGCGGGAGTTGGCGGCGCCGGCTGTGGTGGCACAGACGAAAGGCAGGAAAAGGCTGGCTTGACGAGCGGGAGGATCAGTCGGCTAAATACTCAACCCACAACAAGGGAGCCTCGCAACCTACCGTT
TAAGCATCTAACCCAACCGCCCAGCTAGTTAACCCGAGCGGTCCGCCGTCAGCTCGGGTTCGGCCGGCCTCCGGCCCGCCCGCCGCAGCCGTGGTGGCAACCCCGGGAGGAGCGCTGGCGTCCATCTC
CTTCGATTCTCGGGATTTGAAGATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGATGCCAGTGA
ATATTTGGGCTTCGATGCAGCAGCAGCAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAGCTTAAAGCAGCGC
CTGGGTAAGAGTAATATCCAGGCACGGTTAGGCCGACCCATAGGTGCTCTGGCCAGGGGAGCAATTGGAGGAAGAAGCCTTCCCATAATCCAGAGAGGCTTGCCCCGAGGAGGACTACGTGGGGGACG
TGCCACCAGAACCCTGCTTAGGGGTGGGATGTCGCTCCGAGGTCGGGGTATGATAGGTCGGGGAAGAGGGGGCTTTGGAGGCAGAGGCCGAGGTCGTGGCCGAGGGAGAGGTGCCCTCACTCGCCCTG
TATTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACACCTGGATGCTGAATTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTGAAGCCTGCCT
GCCTGCCTGCCCACCTGTTAGACTCTTGTTAAAGTCACCACATCTATACAACAACCTTGAGAAAACATGAGAAGAAACGTGATCGATGCTGGAAGGACATGTCACAATAGGCTGTGGACTTACCTGCC
ACCAATTGGTGCATTTAGTCCCTTCCGTCTACTTTTTGATACTGTGTTATATGAAACCCTATTTTCCTTTAATTTGGTTGAGTTTGTTTTGTTGTTTATTCAGTCACCCAGACTTCTATTTGAACAGG
AATGCGTTGGCCTTGTGAGTAGAACAATTTTCCAACCTCTGCCTGTCATATACTCTTGACATTTTTAAATATTTCCTCTGTTGATTTGTATGATCCCAGGAGGAGCCAGTATTCTCACTATTGGGTGG
TCTTTGGGATAGAGTTCTACATCTTTCTTTAAAAGCTTCTTGTTAATAGCTGGAACTAAAGGTGTGTGTGCTGTGTTGATAGTGAAGGTAGTAAATTGGAAACGTTGGTATTGCTACTGGGCCACAGA
ATGGGTTACATAGGGTGGCAACTTTGTTCTGGTCAAAGTTGGTGCCGCCTACATTGAAACCACATAGATGGTAACTAACAAGCTAAATTGGAATTTCCACCCTAAGAAAAGGTTTTTAAGCTCTCCTT
TTAGCTTTCTGTCATACCCAAGAGGCTTCTGCACCTCTCTATAGAAGAAGCAGCCTTTGGTGTGGCTTAGTGGCAGATGAGACAAGGGTTGGAAACTGGTTCCAAACTGACTGCTGGGAAGGCTCCTG
TGCTGTTCATGCTGAAATGCAGTTCCCTGTGTTTGTCCAGAAGCAGCCTGGGTCTGATCCACTTCACTGGCTTTATTGGGCCCTCTTGAAGGTTTAAGTTCAACCATATTTTGTCAGCTATTCAGTTT
CAGTGGAATCTTGTATTTCTGGTTCATTATAACAAATTGTTCTCTCATTTAACCCAGGCTTTCTGTTTATTTTGGGGGGGTCCTTAAAATGTTATATAGCCATTTTTGTGGTGTGTTAAAATTCCTGG
GATGATAACAAACCTTTAATCCTACCACTTGGTAAGCATAGGCAGGTGGTTATCTGTGGGTTCCAAGGCCAGCTTGGTCTCAGAGTTAGTTACAGGATAACCAGGGCTACACCAGCCCTGTCTTGGAA
AAAAGAAATATTCTAGGGGTAGGGGAAATGTTGCTTTGTGGTAGAAAGTAAAACTTGGACTCTCCTTTGACGAAACTCTTAGGAAGTGTACACCTGCCTAGAAAGTACTAGTGGACTGTACTATGGCT
GTTTAGGGGAAAAGATCACAACCCTCTTAACTGTGCTGTGCATTTAAGAGCCAGGAAGGAAATAATTGAAGATCACCTGAATTTGAATCCTTACTTGTTTGAGATGGGGAATCTCTGGGACCCAGGGA
AGATGGACTCTGTGGTATAGGAAGCGGGTGCTTAAGGGTAGATCTCAGCAAAGGGAAGTGATGACTCTAGACCCCCTTTCTACTGACTGTCATTCCTACTTTGTGAAAAAGTTCAATTCCCCTACCAA
CCATAGGCCCTTCAGCTTCAGGTCTACCTGCTGTGTGCAGTCCTCAGAGTCTCCTAAGGTCTTGTTGTCCACCATTGCTTTCCTCTTTCCTGGTGATGCCTCAGGTGGACCAGAGAGCAAACCTGACT
CCTATCTTCTGAGGACTTGCCTTCCATCCAAGGTCTCACTCATGGTGTCACAGAAGTGCATTGGGAGAACAGAGGAAAGATTTGACCAGCTAGAGCTGAAGCTCAGGAAAGTTTAAAGATAGGTGGGA
AGAGTTAGGACAAGGGCAAAAAAATTGTGATACCACTGTGGAGATTGCATATAAGTTTGAGGCTAGCCTGGGTTATATGTCAAAGAAGTTTCAAGCAAAGGCAATAAATACTGTGGTTACCACATAGA
CAGAGAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399723 ⟹ NP_001386652

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,290,348 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,767 (-)	NCBI

RefSeq Acc Id:

NM_001399724 ⟹ NP_001386653

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,290,348 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,767 (-)	NCBI

RefSeq Acc Id:

NM_001399725 ⟹ NP_001386654

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,290,348 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,767 (-)	NCBI

RefSeq Acc Id:

XM_006232710 ⟹ XP_006232772

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,813 (-)	NCBI
Rnor_6.0	2	189,887,850 - 189,900,061 (-)	NCBI
Rnor_5.0	2	209,318,314 - 209,330,501 (-)	NCBI

Sequence:

show sequence

AACAAAAAAAACCTGAAGAATTTTTTCCCAAGCTTCATTGTTTATTGATGTACCATCAATGCTA
GACATTATGTAATAATTAGGGGTTCATTAGTGGGGATACAGATTTGCTTTACTGTATTATGTGAGGTGAAAAGACCCACCCTAAAACTAGCCACATCTTCTAGCAGCAGTCCCTATAAAAGGATGCAG
AATCCAATGTGGATCTTCAATCCCAGTACAGTGAGGGGGGAGGGGGAAAGTGAGGAGGGAAGATGAATCTTTGTGAGTTTGAAGCTAGTTTGGTCTACACAGAGAAATCCTGCCTCAAAAAGAAAAAA
ACAATACAAATAGGGATGAGAAGAGGGCCAGAGCAAATCAGCGAGGTTCTAAGGTCCTAATAAGATTTTACTTTTGGTCTTTAACTTGGGAAATAAAAGAATATAAACACTGCTTCCAATCTAAGCTG
CTCTCTGCAAACCAAAACCCCAAACAAAGTAGGGCATAAACTTGTCCTGCAGGTAGTCAAGATACCTAGCGATTGTGACCACTGACCACGCCCCCAAGGGCGGAGCACTACACGTAACTTAAGGGATC
TTTGCCAAAGTCCGTAGGGATACGCCTGCGACTCCTGCGCAAGCCAAAGGGCCCATTTTTCCACGCCCCTAGTTGCGCGCGCAATGACGCAAGCCCGTCGGCGCCATTTTAGCCGGTCACGCTGCACT
GGTGGGCCTGGCGGCCATTTTGTTTTGGACACCAAGCGGGAGTTGGCGGCGCCGGCTGTGGTGGCACAGACGAAAGGCAGGAAAAGGCTGGCTTGACGAGCGGGAGGATCAGTCGGCTAAATACTCAA
CCCACAACAAGGGAGCCTCGCAACCTACCGTTTAAGCATCTAACCCAACCGCCCAGCTAGTTAACCCGAGCGGTCCGCCGTCAGCTCGGGTTCGGCCGGCCTCCGGCCCGCCCGCCGCAGCCGTGGTG
GCAACCCCGGGAGGAGCGCTGGCGTCCATCTCCTTCGGTGAGTTTCTGTGGTGAAAGCAGAGGTGGAGCGCCGAGGGGGCGCGGGACATGGCGCGGACGGCAGGTGCGGATGGGGCTGAGATTCTCGG
GATTTGAAGATGGCTGCACAGTCAGCGCCGAAAGTTGTGCTAAAAAGCACCACCAAGATGTCTCTAAATGAGCGCTTTACTAATATGCTGAAGAACAAACAGCCGATGCCAGTGAATATTTGGGCTTC
GATGCAGCAGCAGCAGCAGCTAGCCAGTGCCAGAAACAGAAGACTGGCCCAGCAGATGGAGAATAGACCCTCTGTCCAGGCAGCATTAAAACTTAAGCAGAAGAGCTTAAAGCAGCGCCTGGGTAAGA
GTAATATCCAGGCACGGTTAGGCCGACCCATAGGTGCTCTGGCCAGGGGAGCAATTGGAGGAAGAAGCCTTCCCATAATCCAGAGAGGCTTGCCCCGAGGAGGACTACGTGGGGGACGTGCCACCAGA
ACCCTGCTTAGGGGTGGGATGTCGCTCCGAGGTCAAAACCTGCTCCGAGGTGGACGAGCCGTAGCTCCCCGAATGGGCTTAAGAAGAGGTGGTGTTCGAGGTCGTGGAGGTCCTGGGAGAGGGGGCCT
AGGGCGTGGAGCTATGGGTCGTGGCGGAATCGGTGGTAGAGGTCGGGGTATGATAGGTCGGGGAAGAGGGGGCTTTGGAGGCAGAGGCCGAGGTCGTGGCCGAGGGAGAGGTGCCCTCACTCGCCCTG
TATTGACCAAGGAGCAGCTGGACAACCAATTGGATGCATACATGTCGAAAACTAAAGGACACCTGGATGCTGAATTGGATGCCTACATGGCACAGACAGATCCTGAAACCAATGATTGAAGCCTGCCT
GCCTGCCTGCCCACCTGTTAGACTCTTGTTAAAGTCACCACATCTATACAACAACCTTGAGAAAACATGAGAAGAAACGTGATCGATGCTGGAAGGACATGTCACAATAGGCTGTGGACTTACCTGCC
ACCAATTGGTGCATTTAGTCCCTTCCGTCTACTTTTTGATACTGTGTTATATGAAACCCTATTTTCCTTTAATTTGGTTGAGTTTGTTTTGTTGTTTATTCAGTCACCCAGACTTCTATTTGAACAGG
AATGCGTTGGCCTTGTGAGTAGAACAATTTTCCAACCTCTGCCTGTCATATACTCTTGACATTTTTAAATATTTCCTCTGTTGATTTGTATGATCCCAGGAGGAGCCAGTATTCTCACTATTGGGTGG
TCTTTGGGATAGAGTTCTACATCTTTCTTTAAAAGCTTCTTGTTAATAGCTGGAACTAAAGGTGTGTGTGCTGTGTTGATAGTGAAGGTAGTAAATTGGAAACGTTGGTATTGCTACTGGGCCACAGA
ATGGGTTACATAGGGTGGCAACTTTGTTCTGGTCAAAGTTGGTGCCGCCTACATTGAAACCACATAGATGGTAACTAACAAGCTAAATTGGAATTTCCACCCTAAGAAAAGGTTTTTAAGCTCTCCTT
TTAGCTTTCTGTCATACCCAAGAGGCTTCTGCACCTCTCTATAGAAGAAGCAGCCTTTGGTGTGGCTTAGTGGCAGATGAGACAAGGGTTGGAAACTGGTTCCAAACTGACTGCTGGGAAGGCTCCTG
TGCTGTTCATGCTGAAATGCAGTTCCCTGTGTTTGTCCAGAAGCAGCCTGGGTCTGATCCACTTCACTGGCTTTATTGGGCCCTCTTGAAGGTTTAAGTTCAACCATATTTTGTCAGCTATTCAGTTT
CAGTGGAATCTTGTATTTCTGGTTCATTATAACAAATTGTTCTCTCATTTAACCCAGGCTTTCTGTTTATTTTGGGGGGGTCCTTAAAATGTTATATAGCCATTTTTGTGGTGTGTTAAAATTCCTGG
GATGATAACAAACCTTTAATCCTACCACTTGGTAAGCATAGGCAGGTGGTTATCTGTGGGTTCCAAGGCCAGCTTGGTCTCAGAGTTAGTTACAGGATAACCAGGGCTACACCAGCCCTGTCTTGGAA
AAAAGAAATATTCTAGGGGTAGGGGAAATGTTGCTTTGTGGTAGAAAGTAAAACTTGGACTCTCCTTTGACGAAACTCTTAGGAAGTGTACACCTGCCTAGAAAGTACTAGTGGACTGTACTATGGCT
GTTTAGGGGAAAAGATCACAACCCTCTTAACTGTGCTGTGCATTTAAGAGCCAGGAAGGAAATAATTGAAGATCACCTGAATTTGAATCCTTACTTGTTTGAGATGGGGAATCTCTGGGACCCAGGGA
AGATGGACTCTGTGGTATAGGAAGCGGGTGCTTAAGGGTAGATCTCAGCAAAGGGAAGTGATGACTCTAGACCCCCTTTCTACTGACTGTCATTCCTACTTTGTGAAAAAGTTCAATTCCCCTACCAA
CCATAGGCCCTTCAGCTTCAGGTCTACCTGCTGTGTGCAGTCCTCAGAGTCTCCTAAGGTCTTGTTGTCCACCATTGCTTTCCTCTTTCCTGGTGATGCCTCAGGTGGACCAGAGAGCAAACCTGACT
CCTATCTTCTGAGGACTTGCCTTCCATCCAAGGTCTCACTCATGGTGTCACAGAAGTGCATTGGGAGAACAGAGGAAAGATTTGACCAGCTAGAGCTGAAGCTCAGGAAAGTTTAAAGATAGGTGGGA
AGAGTTAGGACAAGGGCAAAAAAAATTGTGATACCACTGTGGAGATTGCATATAAGTTTGAGGCTAGCCTGGGTTATATGTCAAAGAAGTTTCAAGCAAAGGCAATAAATACTGTGGTTACCACATAG
ACAGAGAAA

hide sequence

RefSeq Acc Id:

XM_039102687 ⟹ XP_038958615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,815 (-)	NCBI

RefSeq Acc Id:

XM_039102688 ⟹ XP_038958616

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,816 (-)	NCBI

RefSeq Acc Id:

XM_039102689 ⟹ XP_038958617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,815 (-)	NCBI

RefSeq Acc Id:

XM_039102691 ⟹ XP_038958619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI
mRatBN7.2	2	175,981,266 - 175,992,820 (-)	NCBI

RefSeq Acc Id:

XM_063282167 ⟹ XP_063138237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI

RefSeq Acc Id:

XM_063282168 ⟹ XP_063138238

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	178,278,848 - 178,291,142 (-)	NCBI


Protein RefSeqs	NP_001014197	(Get FASTA)	NCBI Sequence Viewer
	NP_001386652	(Get FASTA)	NCBI Sequence Viewer
	NP_001386653	(Get FASTA)	NCBI Sequence Viewer
	NP_001386654	(Get FASTA)	NCBI Sequence Viewer
	XP_006232772	(Get FASTA)	NCBI Sequence Viewer
	XP_038958615	(Get FASTA)	NCBI Sequence Viewer
	XP_038958616	(Get FASTA)	NCBI Sequence Viewer
	XP_038958617	(Get FASTA)	NCBI Sequence Viewer
	XP_038958619	(Get FASTA)	NCBI Sequence Viewer
	XP_063138237	(Get FASTA)	NCBI Sequence Viewer
	XP_063138238	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81985	(Get FASTA)	NCBI Sequence Viewer
	AAI00085	(Get FASTA)	NCBI Sequence Viewer
	EDM00557	(Get FASTA)	NCBI Sequence Viewer
	EDM00558	(Get FASTA)	NCBI Sequence Viewer
	EDM00559	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010455
	ENSRNOP00000010455.5
	ENSRNOP00000017561
	ENSRNOP00000017561.4
	ENSRNOP00000102443
GenBank Protein	Q498T2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014197 ⟸ NM_001014175
- Peptide Label:	isoform 4
- UniProtKB:	A6J6N1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIWASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQSLKQRLGKSNIQARLGRPIGALARGAIGGRSLPIIQRGLPRGGLRGGRATRTLLR GGMSLRGRGMIGRGRGGFGGRGRGRGRGRGALTRPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND hide sequence

RefSeq Acc Id:	XP_006232772 ⟸ XM_006232710
- Peptide Label:	isoform X3
- UniProtKB:	A6J6M9 (UniProtKB/TrEMBL), A6J6N2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAQSAPKVVLKSTTKMSLNERFTNMLKNKQPMPVNIWASMQQQQQLASARNRRLAQQMENRPSVQAALKLKQKSLKQRLGKSNIQARLGRPIGALARGAIGGRSLPIIQRGLPRGGLRGGRATRTLL RGGMSLRGQNLLRGGRAVAPRMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRGRGALTRPVLTKEQLDNQLDAYMSKTKGHLDAELDAYMAQTDPETND hide sequence

Ensembl Acc Id:

ENSRNOP00000017561 ⟸ ENSRNOT00000017561

Ensembl Acc Id:

ENSRNOP00000010455 ⟸ ENSRNOT00000010455

RefSeq Acc Id:	XP_038958619 ⟸ XM_039102691
- Peptide Label:	isoform X5

Protein Domains

Chromatin target of PRMT1 protein C-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q498T2-F1-model_v2	AlphaFold	Q498T2	1-248	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13691504

Promoter ID:

EPDNEW_R2029

Type:

multiple initiation site

Name:

Chtop_1

Description:

chromatin target of PRMT1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	189,899,342 - 189,899,402	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-52339	BioCyc
Ensembl Genes	ENSRNOG00000012760	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000010455	ENTREZGENE
	ENSRNOT00000010455.9	UniProtKB/Swiss-Prot
	ENSRNOT00000017561	ENTREZGENE
	ENSRNOT00000017561.8	UniProtKB/Swiss-Prot
	ENSRNOT00000137072	ENTREZGENE
IMAGE_CLONE	IMAGE:7128951	IMAGE-MGC_LOAD
	IMAGE:7385093	IMAGE-MGC_LOAD
InterPro	CTOP_PRMT1	UniProtKB/Swiss-Prot
	FoP_C	UniProtKB/Swiss-Prot
KEGG Report	rno:361990	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:112768	IMAGE-MGC_LOAD
	MGC:94177	IMAGE-MGC_LOAD
NCBI Gene	361990	ENTREZGENE
PANTHER	CHROMATIN TARGET OF PRMT1 PROTEIN	UniProtKB/Swiss-Prot
	CHROMATIN TARGET OF PRMT1 PROTEIN	UniProtKB/Swiss-Prot
Pfam	FoP_duplication	UniProtKB/Swiss-Prot
PhenoGen	Chtop	PhenoGen
RatGTEx	ENSRNOG00000012760	RatGTEx
SMART	FoP_duplication	UniProtKB/Swiss-Prot
UniProt	A6J6M8	ENTREZGENE, UniProtKB/TrEMBL
	A6J6M9	ENTREZGENE, UniProtKB/TrEMBL
	A6J6N0	ENTREZGENE, UniProtKB/TrEMBL
	A6J6N1	ENTREZGENE, UniProtKB/TrEMBL
	A6J6N2	ENTREZGENE, UniProtKB/TrEMBL
	CHTOP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q66H75	ENTREZGENE
UniProt Secondary	Q66H75	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-21	Chtop	chromatin target of PRMT1	LOC361990	similar to DKFZP547E1010 protein	Name and Symbol changed	629549	APPROVED
2005-07-29	LOC361990	similar to DKFZP547E1010 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar