Chtop (chromatin target of PRMT1) - Rat Genome Database

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Gene: Chtop (chromatin target of PRMT1) Rattus norvegicus
Analyze
Symbol: Chtop
Name: chromatin target of PRMT1
RGD ID: 1359407
Description: Predicted to enable methyl-CpG binding activity. Predicted to be involved in chromatin remodeling; mRNA export from nucleus; and positive regulation of helicase activity. Predicted to act upstream of or within in utero embryonic development. Predicted to be located in nucleolus. Predicted to be part of transcription export complex. Predicted to be active in nuclear speck. Orthologous to human CHTOP (chromatin target of PRMT1); INTERACTS WITH atrazine; bisphenol A; fipronil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: chromatin target of PRMT1 protein; Fop; Friend of PRMT1 protein; hypothetical protein LOC361990; LOC361990; similar to DKFZP547E1010 protein; small arginine- and glycine-rich protein; SRAG
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,278,848 - 178,291,142 (-)NCBIGRCr8
mRatBN7.22175,981,266 - 175,992,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,981,271 - 175,992,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,121,379 - 183,132,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,143,642 - 181,155,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,743,986 - 175,755,485 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,887,850 - 189,900,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,887,857 - 189,899,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,318,314 - 209,330,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,772,001 - 182,783,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,722,109 - 182,733,582 (-)NCBI
Celera2169,916,772 - 169,928,245 (-)NCBICelera
Cytogenetic Map2q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:22658674   PMID:22681889   PMID:23299939   PMID:25284789   PMID:27996060  


Genomics

Comparative Map Data
Chtop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,278,848 - 178,291,142 (-)NCBIGRCr8
mRatBN7.22175,981,266 - 175,992,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,981,271 - 175,992,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,121,379 - 183,132,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,143,642 - 181,155,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,743,986 - 175,755,485 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,887,850 - 189,900,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,887,857 - 189,899,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,318,314 - 209,330,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,772,001 - 182,783,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,722,109 - 182,733,582 (-)NCBI
Celera2169,916,772 - 169,928,245 (-)NCBICelera
Cytogenetic Map2q34NCBI
CHTOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,634,066 - 153,646,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,633,982 - 153,646,306 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,606,542 - 153,618,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,873,149 - 151,884,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera1126,677,559 - 126,689,013 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,969,964 - 124,982,321 (+)NCBIHuRef
CHM1_11155,002,435 - 155,014,759 (+)NCBICHM1_1
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBIT2T-CHM13v2.0
Chtop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,405,846 - 90,417,400 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,406,263 - 90,416,805 (-)EnsemblGRCm39 Ensembl
GRCm38390,498,539 - 90,509,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,498,956 - 90,509,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,302,880 - 90,313,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,584,885 - 90,595,370 (-)NCBIMGSCv36mm8
Celera390,536,803 - 90,547,288 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.24NCBI
Chtop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545282,342 - 292,785 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545282,342 - 292,428 (+)NCBIChiLan1.0ChiLan1.0
CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,186,853 - 96,198,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,922,882 - 95,934,368 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,989,920 - 129,002,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,617,934 - 132,630,654 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,617,934 - 132,630,654 (+)Ensemblpanpan1.1panPan2
CHTOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,418,902 - 43,428,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,419,707 - 43,427,856 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,368,614 - 43,377,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBIUU_Cfam_GSD_1.0
Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,404,354 - 24,414,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,434,773 - 3,445,080 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,436,260 - 3,444,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHTOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,994,263 - 96,005,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,996,030 - 96,006,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,889,209 - 104,898,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHTOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,159,463 - 10,170,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,154,734 - 10,170,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,536,012 - 9,548,571 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chtop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,501,470 - 3,511,451 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,501,468 - 3,511,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:61
Count of miRNA genes:27
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000010455, ENSRNOT00000017561
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1578671Bmd10Bone mineral density QTL 105.4femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)2175931416220931416Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2139067258184067258Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
631522Bp74Blood pressure QTL 740.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2175008837220008837Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001399725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_591190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_591191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC097705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010455   ⟹   ENSRNOP00000010455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,982,442 - 175,992,748 (-)Ensembl
Rnor_6.0 Ensembl2189,888,833 - 189,899,103 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000017561   ⟹   ENSRNOP00000017561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2175,981,271 - 175,992,742 (-)Ensembl
Rnor_6.0 Ensembl2189,887,857 - 189,899,325 (-)Ensembl
RefSeq Acc Id: NM_001014175   ⟹   NP_001014197
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,290,348 (-)NCBI
mRatBN7.22175,981,266 - 175,992,767 (-)NCBI
Rnor_6.02189,887,850 - 189,899,325 (-)NCBI
Rnor_5.02209,318,314 - 209,330,501 (-)NCBI
RGSC_v3.42182,772,001 - 182,783,476 (-)RGD
Celera2169,916,772 - 169,928,245 (-)RGD
Sequence:
RefSeq Acc Id: NM_001399723   ⟹   NP_001386652
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,290,348 (-)NCBI
mRatBN7.22175,981,266 - 175,992,767 (-)NCBI
RefSeq Acc Id: NM_001399724   ⟹   NP_001386653
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,290,348 (-)NCBI
mRatBN7.22175,981,266 - 175,992,767 (-)NCBI
RefSeq Acc Id: NM_001399725   ⟹   NP_001386654
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,290,348 (-)NCBI
mRatBN7.22175,981,266 - 175,992,767 (-)NCBI
RefSeq Acc Id: XM_006232710   ⟹   XP_006232772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,291,142 (-)NCBI
mRatBN7.22175,981,266 - 175,992,813 (-)NCBI
Rnor_6.02189,887,850 - 189,900,061 (-)NCBI
Rnor_5.02209,318,314 - 209,330,501 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102687   ⟹   XP_038958615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,291,142 (-)NCBI
mRatBN7.22175,981,266 - 175,992,815 (-)NCBI
RefSeq Acc Id: XM_039102688   ⟹   XP_038958616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,291,142 (-)NCBI
mRatBN7.22175,981,266 - 175,992,816 (-)NCBI
RefSeq Acc Id: XM_039102689   ⟹   XP_038958617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,291,142 (-)NCBI
mRatBN7.22175,981,266 - 175,992,815 (-)NCBI
RefSeq Acc Id: XM_039102691   ⟹   XP_038958619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,291,142 (-)NCBI
mRatBN7.22175,981,266 - 175,992,820 (-)NCBI
RefSeq Acc Id: XM_063282167   ⟹   XP_063138237
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,291,142 (-)NCBI
RefSeq Acc Id: XM_063282168   ⟹   XP_063138238
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82178,278,848 - 178,291,142 (-)NCBI
RefSeq Acc Id: NP_001014197   ⟸   NM_001014175
- Peptide Label: isoform 4
- UniProtKB: A6J6N1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232772   ⟸   XM_006232710
- Peptide Label: isoform X3
- UniProtKB: A6J6M9 (UniProtKB/TrEMBL),   A6J6N2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017561   ⟸   ENSRNOT00000017561
Ensembl Acc Id: ENSRNOP00000010455   ⟸   ENSRNOT00000010455
RefSeq Acc Id: XP_038958619   ⟸   XM_039102691
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038958616   ⟸   XM_039102688
- Peptide Label: isoform X1
- UniProtKB: A6J6N0 (UniProtKB/TrEMBL),   A6J6N2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958617   ⟸   XM_039102689
- Peptide Label: isoform X2
- UniProtKB: A6J6N2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958615   ⟸   XM_039102687
- Peptide Label: isoform X1
- UniProtKB: A6J6N0 (UniProtKB/TrEMBL),   A6J6N2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386653   ⟸   NM_001399724
- Peptide Label: isoform 2
- UniProtKB: Q498T2 (UniProtKB/Swiss-Prot),   Q66H75 (UniProtKB/Swiss-Prot),   A6J6N2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386654   ⟸   NM_001399725
- Peptide Label: isoform 3
- UniProtKB: A6J6N1 (UniProtKB/TrEMBL),   A6J6M8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386652   ⟸   NM_001399723
- Peptide Label: isoform 1
- UniProtKB: A6J6N2 (UniProtKB/TrEMBL),   A6J6M9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138238   ⟸   XM_063282168
- Peptide Label: isoform X6
- UniProtKB: A6J6N1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138237   ⟸   XM_063282167
- Peptide Label: isoform X4
- UniProtKB: Q66H75 (UniProtKB/Swiss-Prot),   Q498T2 (UniProtKB/Swiss-Prot),   A6J6N2 (UniProtKB/TrEMBL)
Protein Domains
Chromatin target of PRMT1 protein C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q498T2-F1-model_v2 AlphaFold Q498T2 1-248 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691504
Promoter ID:EPDNEW_R2029
Type:multiple initiation site
Name:Chtop_1
Description:chromatin target of PRMT1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02189,899,342 - 189,899,402EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359407 AgrOrtholog
BioCyc Gene G2FUF-52339 BioCyc
Ensembl Genes ENSRNOG00000012760 Ensembl, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000010455.9 UniProtKB/Swiss-Prot
  ENSRNOT00000017561.8 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7128951 IMAGE-MGC_LOAD
  IMAGE:7385093 IMAGE-MGC_LOAD
InterPro CTOP_PRMT1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FoP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361990 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112768 IMAGE-MGC_LOAD
  MGC:94177 IMAGE-MGC_LOAD
NCBI Gene 361990 ENTREZGENE
PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/Swiss-Prot
  CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/Swiss-Prot
  CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/TrEMBL
  CHROMATIN TARGET OF PRMT1 PROTEIN UniProtKB/TrEMBL
Pfam FoP_duplication UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Chtop PhenoGen
RatGTEx ENSRNOG00000012760 RatGTEx
SMART FoP_duplication UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6J6M8 ENTREZGENE, UniProtKB/TrEMBL
  A6J6M9 ENTREZGENE, UniProtKB/TrEMBL
  A6J6N0 ENTREZGENE, UniProtKB/TrEMBL
  A6J6N1 ENTREZGENE, UniProtKB/TrEMBL
  A6J6N2 ENTREZGENE, UniProtKB/TrEMBL
  CHTOP_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q66H75 ENTREZGENE
UniProt Secondary Q66H75 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-21 Chtop  chromatin target of PRMT1  LOC361990  similar to DKFZP547E1010 protein  Name and Symbol changed 629549 APPROVED
2005-07-29 LOC361990  similar to DKFZP547E1010 protein      Symbol and Name status set to provisional 70820 PROVISIONAL