CHTOP (chromatin target of PRMT1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CHTOP (chromatin target of PRMT1) Canis lupus familiaris
Analyze
Symbol: CHTOP
Name: chromatin target of PRMT1
RGD ID: 12418222
Description: ENCODES a protein that exhibits methyl-CpG binding (inferred); INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN nuclear speck (inferred); transcription export complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,418,902 - 43,428,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,419,707 - 43,427,856 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,368,614 - 43,377,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
CHTOP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,418,902 - 43,428,012 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,419,707 - 43,427,856 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,368,614 - 43,377,583 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBIUU_Cfam_GSD_1.0
CHTOP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,634,066 - 153,646,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,633,982 - 153,646,306 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,606,542 - 153,618,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,873,149 - 151,884,603 (+)NCBINCBI36Build 36hg18NCBI36
Celera1126,677,559 - 126,689,013 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,969,964 - 124,982,321 (+)NCBIHuRef
CHM1_11155,002,435 - 155,014,759 (+)NCBICHM1_1
T2T-CHM13v2.01152,771,330 - 152,783,570 (+)NCBIT2T-CHM13v2.0
Chtop
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,405,846 - 90,417,400 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,406,263 - 90,416,805 (-)EnsemblGRCm39 Ensembl
GRCm38390,498,539 - 90,509,527 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,498,956 - 90,509,498 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,302,880 - 90,313,365 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,584,885 - 90,595,370 (-)NCBIMGSCv36mm8
Celera390,536,803 - 90,547,288 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.24NCBI
Chtop
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,278,848 - 178,291,142 (-)NCBIGRCr8
mRatBN7.22175,981,266 - 175,992,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,981,271 - 175,992,748 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,121,379 - 183,132,881 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,143,642 - 181,155,144 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,743,986 - 175,755,485 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,887,850 - 189,900,079 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,887,857 - 189,899,325 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,318,314 - 209,330,501 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,772,001 - 182,783,476 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,722,109 - 182,733,582 (-)NCBI
Celera2169,916,772 - 169,928,245 (-)NCBICelera
Cytogenetic Map2q34NCBI
Chtop
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545282,342 - 292,785 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545282,342 - 292,428 (+)NCBIChiLan1.0ChiLan1.0
CHTOP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,186,853 - 96,198,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,922,882 - 95,934,368 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,989,920 - 129,002,242 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,617,934 - 132,630,654 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,617,934 - 132,630,654 (+)Ensemblpanpan1.1panPan2
Chtop
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,404,354 - 24,414,140 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,434,773 - 3,445,080 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,436,260 - 3,444,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHTOP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,994,263 - 96,005,585 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,996,030 - 96,006,511 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,889,209 - 104,898,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHTOP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,159,463 - 10,170,949 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,154,734 - 10,170,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,536,012 - 9,548,571 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chtop
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,501,470 - 3,511,451 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,501,468 - 3,511,481 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHTOP
89 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 5 5 22 6 6 6 6 6 12 8 10 6
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005622813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005622814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014115417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014115418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014115419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022421397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038481919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038543305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038572695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038607416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038672108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000027787   ⟹   ENSCAFP00000025837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl743,419,707 - 43,427,856 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000048830   ⟹   ENSCAFP00000036875
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl743,419,919 - 43,427,856 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082993   ⟹   ENSCAFP00000057857
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl743,419,710 - 43,427,856 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003218   ⟹   ENSCAFP00845002553
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,368,614 - 43,377,573 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003233   ⟹   ENSCAFP00845002565
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,368,624 - 43,376,866 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003258   ⟹   ENSCAFP00845002585
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,369,358 - 43,377,563 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003270   ⟹   ENSCAFP00845002594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,369,422 - 43,377,583 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845003274   ⟹   ENSCAFP00845002597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,369,631 - 43,377,583 (-)Ensembl
RefSeq Acc Id: XM_005622813   ⟹   XP_005622870
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1743,418,902 - 43,428,012 (-)NCBI
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005622814   ⟹   XP_005622871
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1743,418,902 - 43,428,012 (-)NCBI
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014115417   ⟹   XP_013970892
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1743,418,902 - 43,428,012 (-)NCBI
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014115418   ⟹   XP_013970893
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1743,418,902 - 43,427,484 (-)NCBI
Dog10K_Boxer_Tasha742,911,925 - 42,920,508 (-)NCBI
Sequence:
RefSeq Acc Id: XM_014115419   ⟹   XP_013970894
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1743,418,902 - 43,428,012 (-)NCBI
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022421397   ⟹   XP_022277105
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1743,418,902 - 43,428,012 (-)NCBI
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038481912   ⟹   XP_038337840
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBI
RefSeq Acc Id: XM_038481913   ⟹   XP_038337841
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,257 (-)NCBI
RefSeq Acc Id: XM_038481914   ⟹   XP_038337842
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBI
RefSeq Acc Id: XM_038481915   ⟹   XP_038337843
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBI
RefSeq Acc Id: XM_038481916   ⟹   XP_038337844
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBI
RefSeq Acc Id: XM_038481917   ⟹   XP_038337845
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBI
RefSeq Acc Id: XM_038481918   ⟹   XP_038337846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBI
RefSeq Acc Id: XM_038481919   ⟹   XP_038337847
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1743,070,678 - 43,079,784 (-)NCBI
RefSeq Acc Id: XM_038543298   ⟹   XP_038399226
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBI
RefSeq Acc Id: XM_038543299   ⟹   XP_038399227
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,416,628 (-)NCBI
RefSeq Acc Id: XM_038543300   ⟹   XP_038399228
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBI
RefSeq Acc Id: XM_038543301   ⟹   XP_038399229
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBI
RefSeq Acc Id: XM_038543302   ⟹   XP_038399230
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBI
RefSeq Acc Id: XM_038543303   ⟹   XP_038399231
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBI
RefSeq Acc Id: XM_038543304   ⟹   XP_038399232
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBI
RefSeq Acc Id: XM_038543305   ⟹   XP_038399233
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0743,408,041 - 43,417,155 (-)NCBI
RefSeq Acc Id: XM_038572695   ⟹   XP_038428623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBI
RefSeq Acc Id: XM_038607409   ⟹   XP_038463337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBI
RefSeq Acc Id: XM_038607410   ⟹   XP_038463338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,132,974 (-)NCBI
RefSeq Acc Id: XM_038607411   ⟹   XP_038463339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBI
RefSeq Acc Id: XM_038607412   ⟹   XP_038463340
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBI
RefSeq Acc Id: XM_038607413   ⟹   XP_038463341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBI
RefSeq Acc Id: XM_038607414   ⟹   XP_038463342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBI
RefSeq Acc Id: XM_038607415   ⟹   XP_038463343
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBI
RefSeq Acc Id: XM_038607416   ⟹   XP_038463344
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0743,124,385 - 43,133,500 (-)NCBI
RefSeq Acc Id: XM_038672101   ⟹   XP_038528029
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBI
RefSeq Acc Id: XM_038672102   ⟹   XP_038528030
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,198 (-)NCBI
RefSeq Acc Id: XM_038672103   ⟹   XP_038528031
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBI
RefSeq Acc Id: XM_038672104   ⟹   XP_038528032
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBI
RefSeq Acc Id: XM_038672105   ⟹   XP_038528033
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBI
RefSeq Acc Id: XM_038672106   ⟹   XP_038528034
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBI
RefSeq Acc Id: XM_038672107   ⟹   XP_038528035
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBI
RefSeq Acc Id: XM_038672108   ⟹   XP_038528036
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,368,614 - 43,377,725 (-)NCBI
RefSeq Acc Id: XM_537264   ⟹   XP_537264
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1743,418,902 - 43,428,012 (-)NCBI
Dog10K_Boxer_Tasha742,911,925 - 42,921,035 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005622870 (Get FASTA)   NCBI Sequence Viewer  
  XP_005622871 (Get FASTA)   NCBI Sequence Viewer  
  XP_013970892 (Get FASTA)   NCBI Sequence Viewer  
  XP_013970893 (Get FASTA)   NCBI Sequence Viewer  
  XP_013970894 (Get FASTA)   NCBI Sequence Viewer  
  XP_022277105 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337840 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337841 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337842 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337843 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337844 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337845 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337846 (Get FASTA)   NCBI Sequence Viewer  
  XP_038337847 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399226 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399227 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399228 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399229 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399230 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399231 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399232 (Get FASTA)   NCBI Sequence Viewer  
  XP_038399233 (Get FASTA)   NCBI Sequence Viewer  
  XP_038428623 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463337 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463338 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463341 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038463344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528029 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528030 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528031 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528032 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528033 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528034 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528035 (Get FASTA)   NCBI Sequence Viewer  
  XP_038528036 (Get FASTA)   NCBI Sequence Viewer  
  XP_537264 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000025837.4
  ENSCAFP00000036875.3
  ENSCAFP00030032783.1
  ENSCAFP00030032840.1
  ENSCAFP00030032892.1
  ENSCAFP00030032920.1
  ENSCAFP00040005525.1
  ENSCAFP00040005533.1
  ENSCAFP00040005539.1
  ENSCAFP00845002553
  ENSCAFP00845002553.1
  ENSCAFP00845002565
  ENSCAFP00845002565.1
  ENSCAFP00845002585
  ENSCAFP00845002585.1
  ENSCAFP00845002594.1
  ENSCAFP00845002597
  ENSCAFP00845002597.1
RefSeq Acc Id: XP_005622870   ⟸   XM_005622813
- Peptide Label: isoform X4
- UniProtKB: A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005622871   ⟸   XM_005622814
- Peptide Label: isoform X6
- UniProtKB: A0A8C0K8W0 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_537264   ⟸   XM_537264
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KB71 (UniProtKB/TrEMBL),   A0A8C0NXN4 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013970894   ⟸   XM_014115419
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P0B1 (UniProtKB/TrEMBL),   A0A8I3MQZ7 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013970892   ⟸   XM_014115417
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPL1 (UniProtKB/TrEMBL),   A0A8I3MLG9 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013970893   ⟸   XM_014115418
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPL1 (UniProtKB/TrEMBL),   A0A8I3MLG9 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277105   ⟸   XM_022421397
- Peptide Label: isoform X7
- UniProtKB: A0A8C0PXL3 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000036875   ⟸   ENSCAFT00000048830
RefSeq Acc Id: ENSCAFP00000025837   ⟸   ENSCAFT00000027787
RefSeq Acc Id: ENSCAFP00000057857   ⟸   ENSCAFT00000082993
RefSeq Acc Id: XP_038337847   ⟸   XM_038481919
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038337844   ⟸   XM_038481916
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038337846   ⟸   XM_038481918
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038337843   ⟸   XM_038481915
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038337842   ⟸   XM_038481914
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038337845   ⟸   XM_038481917
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038337840   ⟸   XM_038481912
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038337841   ⟸   XM_038481913
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038463344   ⟸   XM_038607416
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038463341   ⟸   XM_038607413
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038463343   ⟸   XM_038607415
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038463340   ⟸   XM_038607412
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038463339   ⟸   XM_038607411
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038463342   ⟸   XM_038607414
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038463337   ⟸   XM_038607409
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038463338   ⟸   XM_038607410
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038528036   ⟸   XM_038672108
- Peptide Label: isoform X7
- UniProtKB: A0A8C0PXL3 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528033   ⟸   XM_038672105
- Peptide Label: isoform X4
- UniProtKB: A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528035   ⟸   XM_038672107
- Peptide Label: isoform X6
- UniProtKB: A0A8C0K8W0 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528032   ⟸   XM_038672104
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KB71 (UniProtKB/TrEMBL),   A0A8C0NXN4 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528031   ⟸   XM_038672103
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528034   ⟸   XM_038672106
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P0B1 (UniProtKB/TrEMBL),   A0A8I3MQZ7 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528029   ⟸   XM_038672101
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPL1 (UniProtKB/TrEMBL),   A0A8I3MLG9 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038528030   ⟸   XM_038672102
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPL1 (UniProtKB/TrEMBL),   A0A8I3MLG9 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038428623   ⟸   XM_038572695
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399233   ⟸   XM_038543305
- Peptide Label: isoform X7
- UniProtKB: A0A8C0PXL3 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399230   ⟸   XM_038543302
- Peptide Label: isoform X4
- UniProtKB: A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399232   ⟸   XM_038543304
- Peptide Label: isoform X6
- UniProtKB: A0A8C0K8W0 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399229   ⟸   XM_038543301
- Peptide Label: isoform X3
- UniProtKB: A0A8C0KB71 (UniProtKB/TrEMBL),   A0A8C0NXN4 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399228   ⟸   XM_038543300
- Peptide Label: isoform X2
- UniProtKB: A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399231   ⟸   XM_038543303
- Peptide Label: isoform X5
- UniProtKB: A0A8C0P0B1 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8I3MQZ7 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399226   ⟸   XM_038543298
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPL1 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8I3MLG9 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038399227   ⟸   XM_038543299
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPL1 (UniProtKB/TrEMBL),   A0A8I3MEU1 (UniProtKB/TrEMBL),   A0A8I3MLG9 (UniProtKB/TrEMBL),   A0A8P0SLR3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845002594   ⟸   ENSCAFT00845003270
RefSeq Acc Id: ENSCAFP00845002565   ⟸   ENSCAFT00845003233
RefSeq Acc Id: ENSCAFP00845002585   ⟸   ENSCAFT00845003258
RefSeq Acc Id: ENSCAFP00845002597   ⟸   ENSCAFT00845003274
RefSeq Acc Id: ENSCAFP00845002553   ⟸   ENSCAFT00845003218

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017537 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020416 UniProtKB/TrEMBL
  ENSCAFG00040003348 UniProtKB/TrEMBL
  ENSCAFG00845001816 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027787.5 UniProtKB/TrEMBL
  ENSCAFT00000048830.4 UniProtKB/TrEMBL
  ENSCAFT00030037573.1 UniProtKB/TrEMBL
  ENSCAFT00030037634.1 UniProtKB/TrEMBL
  ENSCAFT00030037694.1 UniProtKB/TrEMBL
  ENSCAFT00030037729.1 UniProtKB/TrEMBL
  ENSCAFT00040006385.1 UniProtKB/TrEMBL
  ENSCAFT00040006393.1 UniProtKB/TrEMBL
  ENSCAFT00040006399.1 UniProtKB/TrEMBL
  ENSCAFT00845003218 ENTREZGENE
  ENSCAFT00845003218.1 UniProtKB/TrEMBL
  ENSCAFT00845003233 ENTREZGENE
  ENSCAFT00845003233.1 UniProtKB/TrEMBL
  ENSCAFT00845003258 ENTREZGENE
  ENSCAFT00845003258.1 UniProtKB/TrEMBL
  ENSCAFT00845003270.1 UniProtKB/TrEMBL
  ENSCAFT00845003274 ENTREZGENE
  ENSCAFT00845003274.1 UniProtKB/TrEMBL
InterPro FoP_C UniProtKB/TrEMBL
NCBI Gene CHTOP ENTREZGENE
Pfam FoP_duplication UniProtKB/TrEMBL
SMART FoP_duplication UniProtKB/TrEMBL
UniProt A0A8C0K8W0 ENTREZGENE
  A0A8C0KB71 ENTREZGENE
  A0A8C0NWG8_CANLF UniProtKB/TrEMBL
  A0A8C0NXN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P0B1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PXL3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RPL1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MEU1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MLG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MMK1_CANLF UniProtKB/TrEMBL
  A0A8I3MQY5_CANLF UniProtKB/TrEMBL
  A0A8I3MQZ7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SLR3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:53336 ENTREZGENE