Rf48 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Rf48 (Renal function QTL 48) Rattus norvegicus

Symbol: Rf48
Name: Renal function QTL 48
RGD ID: 1354605
Previously known as: QTL 59
Trait: blood creatinine amount   (VT:0005328)    
Measurement Type: plasma creatinine level   (CMO:0000537)    
LOD Score: 2.9
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8276,328,396 - 209,350,714RGD_MAPPER_PIPELINE
mRatBN7.2274,786,664 - 206,665,859RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0275,687,495 - 221,880,419RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0295,410,090 - 239,931,716RGDRnor5.0
RGSC_v3.4275,806,326 - 214,989,298RGDRGSC3.4
RGSC_v3.1275,734,560 - 214,952,264RGD
Cross Type: intercross
Strains Crossed: LH/Mav LN/Mav 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf48Rathypertension  IAGP 1302893 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf48Ratabnormal circulating creatinine level  QTM 1302893 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf48Ratplasma creatinine level  IDA 1302893 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf48Ratcontrol condition  IDA 1302893 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf48Ratautomated blood creatinine analysis  IDA 1302893 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf48RatLH/Mav  IEA 1302893 RGD 
Rf48RatLN/Mav  IEA 1302893 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf48Ratblood creatinine amount  IDA 1302893 RGD 


#
Reference Title
Reference Citation
1. Mapping the genetic determinants of hypertension, metabolic diseases, and related phenotypes in the lyon hypertensive rat. Bilusic M, etal., Hypertension 2004 Nov;44(5):695-701. Epub 2004 Sep 27.


1 to 20 of 1606 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
11445903LOC108350231uncharacterized LOC10835023127481003074811049Rat
9429209LOC103691486uncharacterized LOC10369148627481148974842763Rat
7523639LOC102554929uncharacterized LOC10255492927510102975109556Rat
41206868Gapdh-ps84Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 8427533303175333975Rat
41232980LOC120100748uncharacterized LOC12010074827537125875412938Rat
621491Basp1brain abundant, membrane attached signal protein 127581613075863801Rat
1589753Cwc15-ps3CWC15 spliceosome-associated protein, pseudogene 327601664376017442Rat
1307193Myo10myosin X27610098976305619Rat
11403233LOC108349968uncharacterized LOC10834996827632408476333964Rat
1565003Retreg1reticulophagy regulator 127633560976474817Rat
11359058LOC10834996760S ribosomal protein L7a pseudogene27636625476367092Rat
1309146Zfp622zinc finger protein 62227647960576494405Rat
6494071Hnrnpm-ps1heterogeneous nuclear ribonucleoprotein M, pseudogene 127649878076500974Rat
1593219Rpl9-ps22ribosomal protein L9, pseudogene 2227660246676603113Rat
40928086LOC120101219U7 small nuclear RNA27664811376648175Rat
1559945Marchf11membrane associated ring-CH-type finger 1127689833076999690Rat
1305813Fbxl7F-box and leucine-rich repeat protein 727713977577509223Rat
41093744LOC120100752uncharacterized LOC12010075227726901677284684Rat
1595140Hsp90ab1-ps10heat shock protein 90 alpha family class B member 1, pseudogene 1027763955877641665Rat
41056389LOC120101320small nucleolar RNA SNORA1727767562177675749Rat

1 to 20 of 1606 rows
1 to 20 of 2017 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10121D2Mco341982102854285102854485Ratregion
10122D2Mco352912102853080102853371Ratregion
10153D2Wox371512190613715190613866Ratregion
10200D2Mgh112222189039155189039377Ratregion
10202D2Arb182742189039155189039429Ratregion
10311D2Wox272152194352314194352529Ratregion
10312D2Arb173482194352240194352588Ratregion
10387D2Mgh261382102771168102771306Ratregion
10574D2Mit191212168377888168378009Ratregion
10582D2Mit122442168358098168358342Ratregion
10583D2Wox171432168358200168358343Ratregion
10584D2Wox181422168355132168355276Ratregion
10585D2Arb122702168358132168358402Ratregion
10701D2Mgh172692167399056167399325Ratregion
10712D2Mgh101612185876309185876470Ratregion
10737D2Wox251262186009113186009259Ratregion
10738D2Arb202382186009118186009356Ratregion
10814D5Mgh71442173254996173255140Ratregion
10904D2Mco332442147752777147753017Ratregion
11006D2Wox243032175947534175947839Ratregion
1 to 20 of 2017 rows

Flank 1: (D2Rat21)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2274,786,664 - 74,786,777 (+)MAPPER
Rnor_6.0275,687,495 - 75,687,607NCBI
Rnor_5.0295,410,090 - 95,410,202UniSTS
RGSC_v3.4275,806,326 - 75,806,439RGD
RGSC_v3.4275,806,327 - 75,806,439UniSTS
RGSC_v3.1275,734,560 - 75,734,672RGD
Celera270,524,335 - 70,524,442UniSTS
RH 3.4 Map2498.8RGD
RH 3.4 Map2498.8UniSTS
SHRSP x BN Map229.4498RGD
SHRSP x BN Map229.4498UniSTS
FHH x ACI Map234.3399RGD
Peak: (D2Rat221)
Rat AssemblyChrPosition (strand)Source
GRCr82142,839,476 - 142,839,635 (+)Marker Load Pipeline
mRatBN7.22140,689,412 - 140,689,571 (+)MAPPER
Rnor_6.02145,956,460 - 145,956,618NCBI
Rnor_5.02165,366,775 - 165,366,933UniSTS
RGSC_v3.42145,754,797 - 145,754,955UniSTS
RGSC_v3.42145,754,796 - 145,754,955RGD
RGSC_v3.12145,704,520 - 145,704,981RGD
Celera2135,159,437 - 135,159,596UniSTS
SHRSP x BN Map258.2898RGD
SHRSP x BN Map258.2898UniSTS
Flank 2: (D2Rat118)
Rat AssemblyChrPosition (strand)Source
GRCr82209,350,500 - 209,350,714 (+)Marker Load Pipeline
mRatBN7.22206,665,645 - 206,665,859 (+)MAPPER
Rnor_6.02221,880,206 - 221,880,419NCBI
Rnor_5.02239,931,503 - 239,931,716UniSTS
RGSC_v3.42214,988,814 - 214,989,298RGD
RGSC_v3.42214,988,989 - 214,989,202UniSTS
RGSC_v3.12214,952,051 - 214,952,264RGD
Celera2199,135,027 - 199,135,240UniSTS
RH 3.4 Map21487.2RGD
RH 3.4 Map21487.2UniSTS
SHRSP x BN Map279.6198RGD
SHRSP x BN Map279.6198UniSTS
FHH x ACI Map292.0499RGD
Cytogenetic Map2q41UniSTS


1 to 10 of 179 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
61457Niddm8Non-insulin dependent diabetes mellitus QTL 84.10.01blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2174543008175950118Rat

1 to 10 of 179 rows


Database
Acc Id
Source(s)
NCBI Gene Rf48

Note Type Note Reference
qtl_cross_type intercross  
qtl_statistics_details linkage analysis performed with Mapmaker; parametric analysis used for traits with a normal distribution, for others nonparametric analysis used 1302893