Ufm1 (ubiquitin-fold modifier 1) - Rat Genome Database

Name: Ufm1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ufm1 (ubiquitin-fold modifier 1) Rattus norvegicus

Analyze

Symbol:

Ufm1

Name:

ubiquitin-fold modifier 1

RGD ID:

1304890

Description:

Involved in negative regulation of apoptotic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 14. Orthologous to human UFM1 (ubiquitin fold modifier 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aconitine; bisphenol A.

Type:

protein-coding (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

LOC365797; MGC109501; RGD1304890; similar to RIKEN cDNA 1810045K17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	UFM1 (ubiquitin fold modifier 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ufm1 (ubiquitin-fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ufm1 (ubiquitin fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	UFM1 (ubiquitin fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	UFM1 (ubiquitin fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ufm1 (ubiquitin fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	UFM1 (ubiquitin fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	UFM1 (ubiquitin fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ufm1 (ubiquitin fold modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	UFM1 (ubiquitin fold modifier 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ufm1 (ubiquitin-fold modifier 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ufm1 (ubiquitin-fold modifier 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ufm1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ufm-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ufm1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	140,119,722 - 140,127,866 (-)	NCBI		GRCr8
mRatBN7.2	2	137,969,476 - 137,977,620 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	137,966,678 - 137,978,089 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	2	137,969,699 - 137,977,577 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	144,535,030 - 144,543,202 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	142,647,091 - 142,655,263 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	137,278,858 - 137,287,030 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	143,096,268 - 143,104,412 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	143,096,271 - 143,104,412 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	162,779,816 - 162,788,185 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	143,057,364 - 143,064,329 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	143,007,998 - 143,014,760 (-)	NCBI
Celera	2	132,453,719 - 132,461,863 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hypomyelinating leukodystrophy 14 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

1H-pyrazole (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

diuron (ISO)

dorsomorphin (ISO)

elesclomol (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

gentamycin (EXP)

glafenine (EXP)

hydrogen peroxide (ISO)

indole-3-methanol (EXP)

ivermectin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

N-acetyl-L-cysteine (ISO)

nicotine (ISO)

nimesulide (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

propiconazole (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

thapsigargin (ISO)

theophylline (ISO)

thiram (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brain development (ISO,ISS)

negative regulation of apoptotic process (IMP)

negative regulation of protein import into nucleus (ISO)

protein K69-linked ufmylation (IBA,ISO,ISS)

protein ufmylation (ISO,ISS)

regulation of insulin secretion involved in cellular response to glucose stimulus (IMP)

regulation of intracellular estrogen receptor signaling pathway (ISO,ISS)

response to endoplasmic reticulum stress (ISO,ISS)

reticulophagy (ISO,ISS)

Cellular Component

cytoplasm (IBA,ISO,ISS)

endoplasmic reticulum (ISO)

nucleus (IBA,ISO,ISS)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Ubiquitin fold modifier 1 (UFM1) and its target UFBP1 protect pancreatic beta cells from ER stress-induced apoptosis.	Lemaire K, etal., PLoS One. 2011 Apr 6;6(4):e18517. doi: 10.1371/journal.pone.0018517.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:8889548	PMID:15071506	PMID:15489334	PMID:20018847	PMID:23152784	PMID:23376485	PMID:25219498	PMID:28393202	PMID:29868776

Genomics

Comparative Map Data

Ufm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	140,119,722 - 140,127,866 (-)	NCBI		GRCr8
mRatBN7.2	2	137,969,476 - 137,977,620 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	137,966,678 - 137,978,089 (-)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	2	137,969,699 - 137,977,577 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	144,535,030 - 144,543,202 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	142,647,091 - 142,655,263 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	137,278,858 - 137,287,030 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	143,096,268 - 143,104,412 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	143,096,271 - 143,104,412 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	162,779,816 - 162,788,185 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	143,057,364 - 143,064,329 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	143,007,998 - 143,014,760 (-)	NCBI
Celera	2	132,453,719 - 132,461,863 (-)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

UFM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	38,349,851 - 38,363,619 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	38,349,849 - 38,363,619 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	38,923,988 - 38,937,756 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	37,822,018 - 37,835,140 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	13	19,977,744 - 19,990,945 (+)	NCBI		Celera
Cytogenetic Map	13	q13.3	NCBI
HuRef	13	19,722,742 - 19,735,946 (+)	NCBI		HuRef
CHM1_1	13	38,891,737 - 38,904,941 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	13	37,569,505 - 37,583,274 (+)	NCBI		T2T-CHM13v2.0

Ufm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	53,760,797 - 53,771,228 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	53,760,797 - 53,771,251 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	53,853,376 - 53,863,807 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	53,853,376 - 53,863,830 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	53,659,131 - 53,667,729 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	53,943,141 - 53,951,701 (-)	NCBI		MGSCv36	mm8
Celera	3	53,576,873 - 53,585,471 (-)	NCBI		Celera
Cytogenetic Map	3	C	NCBI
cM Map	3	25.43	NCBI

Ufm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	7,860,706 - 7,872,972 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	7,860,706 - 7,872,972 (-)	NCBI	ChiLan1.0	ChiLan1.0

UFM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	37,879,787 - 37,897,994 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	28,989,783 - 29,003,752 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	19,571,114 - 19,584,259 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	38,162,598 - 38,175,814 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	38,162,598 - 38,175,814 (+)	Ensembl	panpan1.1		panPan2

UFM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	2,427,521 - 2,547,449 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	2,386,609 - 2,547,311 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	2,623,588 - 2,642,507 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	2,626,565 - 2,645,488 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	2,484,888 - 2,645,635 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	2,525,768 - 2,544,679 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	2,520,179 - 2,540,424 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	2,591,732 - 2,610,662 (-)	NCBI		UU_Cfam_GSD_1.0

Ufm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	163,643,404 - 163,654,332 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937057	142,995 - 153,873 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937057	143,001 - 153,873 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UFM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	13,765,497 - 13,774,294 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	13,516,814 - 13,779,446 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

UFM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	16,812,925 - 16,826,011 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	3	16,813,148 - 16,823,910 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666057	27,445,474 - 27,459,287 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ufm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624920	1,318,511 - 1,329,839 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624920	1,318,468 - 1,477,045 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ufm1
122 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	215
Count of miRNA genes:	161
Interacting mature miRNAs:	184
Transcripts:	ENSRNOT00000058116
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	43162366	148478373	Rat
1549841	Bp256	Blood pressure QTL 256		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	137219876	142323610	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	102803808	147803808	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1358360	Sradr2	Stress Responsive Adrenal Weight QTL 2	10.24		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	2	129164097	152195315	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	127447387	143657569	Rat
12879830	Bw178	Body weight QTL 178		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	2	137219876	142323610	Rat
12879831	Cm82	Cardiac mass QTL 82		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	137219876	142323610	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	76539322	150540526	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	25413423	143657569	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879832	Cm83	Cardiac mass QTL 83		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	137219876	142323610	Rat
12879833	Cm84	Cardiac mass QTL 84		0.001	heart right ventricle mass (VT:0007033)	heart weight to body weight ratio (CMO:0000074)	2	137219876	142323610	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
12879834	Am1	Aortic mass QTL 1		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	137219876	142323610	Rat
12879835	Kidm60	Kidney mass QTL 60		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	137219876	142323610	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1582257	Gluco21	Glucose level QTL 21	3.1	0.0035	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	118111229	157142209	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	157142209	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	143657569	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	104559726	149559726	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	25413652	157142078	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
5135226	Leukc2	Leukocyte quantity QTL 2			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	2	118111229	149559726	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	78665616	143657569	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	25413423	157142209	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
738007	Anxrr7	Anxiety related response QTL 7	4.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	118189491	163189491	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	157142209	Rat
1581552	Pur12	Proteinuria QTL 12	5.19	0.0009	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	2	112103657	148076632	Rat
1558653	Prcr1	Prostate cancer resistance QTL 1	5		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	2	72532993	157142209	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
1354594	Despr10	Despair related QTL 10		2e-06	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	2	114654253	159654253	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	59324377	141596857	Rat

Markers in Region

RH133309

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	137,970,683 - 137,970,885 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	143,097,476 - 143,097,677	NCBI	Rnor6.0
Rnor_5.0	2	162,781,024 - 162,781,225	UniSTS	Rnor5.0
RGSC_v3.4	2	143,057,450 - 143,057,651	UniSTS	RGSC3.4
Celera	2	132,454,927 - 132,455,128	UniSTS
RH 3.4 Map	2	860.2	UniSTS
Cytogenetic Map	2	q26	UniSTS

BE102337

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	137,970,027 - 137,970,198 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	143,096,820 - 143,096,990	NCBI	Rnor6.0
Rnor_5.0	2	162,780,368 - 162,780,538	UniSTS	Rnor5.0
RGSC_v3.4	2	143,056,794 - 143,056,964	UniSTS	RGSC3.4
Celera	2	132,454,271 - 132,454,441	UniSTS
RH 3.4 Map	2	857.9	UniSTS
Cytogenetic Map	2	q26	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	34	57	41	19	41	8	9	74	35	37	11	8
Low		9						2			4
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001126080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP500691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ780192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB787557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV112030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM094134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM099369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000058116 ⟹ ENSRNOP00000054923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	137,969,481 - 137,977,595 (-)	Ensembl
Rnor_6.0 Ensembl	2	143,096,271 - 143,104,412 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	137,966,678 - 137,978,089 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108083

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	137,970,611 - 137,977,595 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108324

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	137,970,598 - 137,977,561 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	137,969,699 - 137,977,577 (+)	Ensembl

RefSeq Acc Id:

NM_001126080 ⟹ NP_001119552

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	140,119,722 - 140,127,866 (-)	NCBI
mRatBN7.2	2	137,969,476 - 137,977,620 (-)	NCBI
Rnor_6.0	2	143,096,268 - 143,104,412 (-)	NCBI
Rnor_5.0	2	162,779,816 - 162,788,185 (-)	NCBI
RGSC_v3.4	2	143,057,364 - 143,064,329 (-)	RGD
Celera	2	132,453,719 - 132,461,863 (-)	NCBI

Sequence:

show sequence

GTGGGCCGCGAAGGACCCCACTGCCTGCCATCAAGGAAGCTAGGCGGGCGGCTGTTCGCGGTTT
GAGTACCAGGCGGTTCCACCATGTCGAAGGTGTCCTTTAAAATCACGCTGACGTCGGACCCGCG
GCTACCGTACAAAGTCCTCAGCGTTCCTGAAAGCACACCTTTCACAGCTGTGCTAAAGTTTGCA
GCAGAAGAGTTTAAAGTTCCTGCTGCTACAAGTGCGATTATTACTAATGATGGAATAGGAATTA
ATCCTGCACAGACTGCTGGAAACGTTTTTCTGAAGCACGGCTCAGAGCTGCGGCTCATTCCTCG
AGACCGAGTTGGGAGCTGCTAATGTATGCTTCTTGGAATGCACAGCCTCTCAGAATGAACACTG
GGATTTGTTGTTGCTGTACAATTGAAATCAGGCATTCACAGCACAATGGAAGCACCGAGAATCA
GCGGAACAGGGAACCTTGACGCTTGTCCCTTCCTGTTCATTTTTTCATGGGAAGAGAGAATGCC
TTTGAGTGGAGGGTACCACACCACAGGTCACACCGTGGTGACTGCTGCCTCACCAGAAGAGAGT
ACCTCTGTGACAAATGGACTGTGCTTTAAAACAAAAACAGCAAAACTGGAGGATAAGTCTGCTA
ATTCTTTTCAGGAGCATTTGGAAAAATTAAAATTCACAGAATCATATGTATCTTCTAATTTTGA
AATTTAAAAGGATAATTGATCATAGAAGCATTTGGCTTGACAGCATCTCTTAGTTAGACTTTTA
AATTATATAATTTGTGATGAACTTAATAGGTATTTGAATGAACAGTTAAATTTATATAAAACCA
AACATTGAATTATGGAATCTAACCATTGTAAGTTGCTGTTGTGCATCGAATAGCTTCAACAATA
ATGACCCTGTGAAATCAAGTGTCATGGTGGGAGCTGACAGTACCACAGGAGCACCCTTAGCTAT
ATTATGAATTCCTTGATAAAGAATAAAGCTTTAAGACAGAAGTCCTTAAACCATTATTTTTGAA
GATTTTATTTTTGAGCAGCATCCAAAAGTATTGTTGCAGAGATGATCTGAAGTGTTGATGGGGT
GTCCCTTAATGAAGAGGAAACTTTAAAGAAGCTGTTAGCATTAGTGACACGTGGATAAAGAACC
AGGGAAGCAAAGCCAGGCTTTTGCCAGAGAGCAGAGGAAGTGAGGGGGAGCAGGAGGCTGGCAG
TATCCAAAGTCAGGATGGAGCTGTGGCAGGGGTGGAAACGTGTGAAAGGGAGAAGACTGGGCAC
AGGGTCAGAAGGCAATTGCATTACACATCAAAACTCAGGGGAGCAATCTACAAGGATGGTGAAA
GGGGGCTTGGTAGGGCTGACAGCCTGAGTTCAAGTGCCAGAGTGAAGGAGATTACCAACTCCCC
AGAGTCATCCTCTGACCTCATGCAGACACCCAGATGTGAGCCAATCCCCTCCCACGATAACTAT
TTGCCTTTACACAGGAAGTCCACAGCTGGCACATGTTTCAAGATGGATCAAATGCTGACTGAGG
GAGAACTAGGCAGCTCTGCTTTAGTAGGGGAACTCTTTGGAGGTGAGGGGTCTCCCTAGAGGTA
GAAGTACAAGTTCTCAATAAATACTAAGTTCATTGATAATGTCTTCAGGACCAGTTTTTATCTT
GTGTCTCATATTCCTTATCATGGGGCTGTCTTAGTAGGAAGGAATTGTCCTTATCTACAGGTTT
GCAGGTTCTGGGGTTCTGAATTATGTAGCAATACGCAGCTCATGTTTACTTGGGTTTTTATGGT
TATGTCCAGTGCCTGGAGACCTTATTCCTTATATTAGGCCTCTGCTAACCGGACATTTAAAAAT
ATTTGCCACCTAATTCTGCTTCTATTAAATTTCTTCCATTCTGCCTTTAGCACAAAATTCTGCT
TGTCAGTACTGTTTATACAGACTTACAGTATGAAATGATTTACCTAACAAACCAGTTCTTTAAT
TTGAAAATACATAGTCTTGAAAATATTTTACTCAAAAACTAGGTAATTTGTTATTAAATGTGAT
CTGTAAGTTCAGAACATTTTAGGCATTGTATTTAATTTTAATGTCTATAATTAATACCTCAGGA
AAATACATTTTGTTATACCGTAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001119552	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91395	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00055033480
	ENSRNOP00060000372
	ENSRNOP00065033836
GenBank Protein	Q5BJP3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001119552 ⟸ NM_001126080
- UniProtKB:	Q5BJP3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAG NVFLKHGSELRLIPRDRVGSC hide sequence

Ensembl Acc Id:

ENSRNOP00000054923 ⟸ ENSRNOT00000058116

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BJP3-F1-model_v2	AlphaFold	Q5BJP3	1-85	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691325

Promoter ID:

EPDNEW_R1850

Type:

initiation region

Name:

Ufm1_1

Description:

ubiquitin-fold modifier 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	143,104,388 - 143,104,448	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304890	AgrOrtholog
BioCyc Gene	G2FUF-53090	BioCyc
Ensembl Genes	ENSRNOG00000038176	Ensembl
	ENSRNOG00000065226	Ensembl
	ENSRNOG00055023968	UniProtKB/Swiss-Prot
	ENSRNOG00060000860	UniProtKB/Swiss-Prot
	ENSRNOG00065024156	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00055041152	UniProtKB/Swiss-Prot
	ENSRNOT00060001067	UniProtKB/Swiss-Prot
	ENSRNOT00065041420	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7323172	IMAGE-MGC_LOAD
InterPro	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot
	UFM1	UniProtKB/Swiss-Prot
KEGG Report	rno:365797	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109501	IMAGE-MGC_LOAD
NCBI Gene	365797	ENTREZGENE
PANTHER	PTHR15825	UniProtKB/Swiss-Prot
	UBIQUITIN-FOLD MODIFIER 1	UniProtKB/Swiss-Prot
Pfam	Ufm1	UniProtKB/Swiss-Prot
PhenoGen	Ufm1	PhenoGen
PIRSF	Ubiquitin-like_Ufm1	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000038176	RatGTEx
	ENSRNOG00000065226	RatGTEx
	ENSRNOG00055023968	RatGTEx
	ENSRNOG00060000860	RatGTEx
	ENSRNOG00065024156	RatGTEx
Superfamily-SCOP	SSF54236	UniProtKB/Swiss-Prot
UniProt	Q5BJP3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Ufm1	ubiquitin-fold modifier 1	RGD1304890	similar to RIKEN cDNA 1810045K17	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1304890	similar to RIKEN cDNA 1810045K17	RGD1304890_predicted	similar to RIKEN cDNA 1810045K17 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1304890_predicted	similar to RIKEN cDNA 1810045K17 (predicted)	LOC365797_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC365797_predicted	similar to RIKEN cDNA 1810045K17 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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