Cia7 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Cia7 (Collagen induced arthritis QTL 7) Rattus norvegicus

Symbol: Cia7
Name: Collagen induced arthritis QTL 7
RGD ID: 61438
Previously known as: Type II Collagen induced arthritis QTL 7
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 4.6
P Value: 1.0E-4
Variance: 20.0
Inheritance Type: dominant
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2259,324,377 - 141,596,857RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0260,325,352 - 147,522,851RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0284,360,871 - 166,931,968RGDRnor5.0
RGSC_v3.4259,700,886 - 146,659,672RGDRGSC3.4
RGSC_v3.1259,629,119 - 146,609,712RGD
Cross Type: F2
Strains Crossed: BBDR/Rhw BN 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Cpb1 is a candidate Gene for Cia7

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BBDR/Rhw  (IEA)
BN  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genetic dissection of a rat model for rheumatoid arthritis: significant gender influences on autosomal modifier loci Furuya T, etal., Hum Mol Genet 2000 Sep 22;9(15):2241-50
2. Identification of a new non-major histocompatibility complex genetic locus on chromosome 2 that controls disease severity in collagen-induced arthritis in rats. Gulko PS, etal., Arthritis Rheum 1998 Dec;41(12):2122-31
3. Quest for arthritis-causative genetic factors in the rat. Joe B Physiol Genomics. 2006 Oct 3;27(1):1-11. Epub 2006 Jun 27.
4. Identification of Two Novel Female-Specific Non-MHC Loci Regulating Collagen-Induced Arthritis Severity and Chronicity, and Evidence for Epistasis. Meng HC,etal., Arthritis Rheum. 2004 Aug;50(8):2695-705.
5. The complexity in hunting for candidate genes within QTL that determine susceptibility to arthritis in rats. Xiong Q, etal., Crit Rev Immunol. 2008;28(2):127-57.
6. Genetic and molecular basis of quantitative trait loci of arthritis in rat: genes and polymorphisms. Xiong Q, etal., J Immunol. 2008 Jul 15;181(2):859-64.
Related QTLs

Related QTL Description Reference
Cia10 interacts with RGD:61063
Cia26 interacts with RGD:1285224


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3407Prlrprolactin receptor25913414759324719Rat
621767Agxt2alanine-glyoxylate aminotransferase 225933625259377664Rat
621729Dnajc21DnaJ heat shock protein family (Hsp40) member C2125941950759446746Rat
1308508Brix1biogenesis of ribosomes BRX125945060859461486Rat
1306496Rad1RAD1 checkpoint DNA exonuclease25946159759469707Rat
41184907LOC120101260small nucleolar RNA SNORA4825946698059467107Rat
7503607Mrpl40-ps1mitochondrial ribosomal protein L40, pseudogene 125946985759471850Rat
1564928Ttc23ltetratricopeptide repeat domain 23-like25947666659538313Rat
40934801Dpy30-ps1dpy-30 histone methyltransferase complex regulatory subunit, pseudogene 125952263859526672Rat
1305942Rai14retinoic acid induced 1425954628459682687Rat
41276753LOC120100740uncharacterized LOC12010074025960122159605292Rat
9387191LOC103691483uncharacterized LOC10369148325973429159747359Rat
11378090LOC10835022960S ribosomal protein L17 pseudogene25984172659842316Rat
1305010C1qtnf3C1q and TNF related 325991709959939519Rat
3048Amacralpha-methylacyl-CoA racemase25994615859958255Rat
1306690Slc45a2solute carrier family 45, member 225996359959996408Rat
1311550Rxfp3relaxin family peptide receptor 326000325660004686Rat
41324318LOC120100741uncharacterized LOC12010074126001648260032748Rat
1307323Adamts12ADAM metallopeptidase with thrombospondin type 1 motif, 1226003287360327629Rat
41066036LOC120101289small nucleolar RNA SNORA1726034044160340572Rat
1359527Tars1threonyl-tRNA synthetase 126036889360387715Rat
1592966Setd3-ps2SET domain containing 3, actin histidine methyltransferase, pseudogene 226045263060453393Rat
1594163Dbi-ps2diazepam binding inhibitor, acyl-CoA binding protein, pseudogene 226066996860670245Rat
11511747LOC108350170glyceraldehyde-3-phosphate dehydrogenase pseudogene26084791860848940Rat
3196Npr3natriuretic peptide receptor 326086548360933432Rat
621582Sub1SUB1 regulator of transcription26100564661020486Rat
41191856LOC120101085uncharacterized LOC12010108526102048861021424Rat
41054385LOC120101168U6 spliceosomal RNA26108224061082346Rat
1311890Zfrzinc finger RNA binding protein26113761161200322Rat
1307902Mtmr12myotubularin related protein 1226122371461293270Rat
40962450LOC120101086uncharacterized LOC12010108626132407061330556Rat
621226Golph3golgi phosphoprotein 326134803061376051Rat
619958Pdzd2PDZ domain containing 226138461461770516Rat
2324713Ftl1-ps14ferritin light chain 1, pseudogene 1426154356361544476Rat
6504200LOC100909396uncharacterized LOC10090939626182809661830209Rat
1306502C2h5orf22similar to human chromosome 5 open reading frame 2226184879061864762Rat
1307626Droshadrosha ribonuclease III26186488661976688Rat
9362373LOC103695100uncharacterized LOC10369510026207365762085399Rat
2322Cdh6cadherin 626207913962225298Rat
11493630LOC10835017160S ribosomal protein L7a pseudogene26242432862430752Rat
11453461LOC108350230glyceraldehyde-3-phosphate dehydrogenase pseudogene26273716662738204Rat
41024443LOC120101173U6 spliceosomal RNA26280651762806619Rat
2323519Oip5-ps1Opa interacting protein 5, pseudogene 126359223363595295Rat
2323466Riox2-ps3ribosomal oxygenase 2, pseudogene 326393638763937165Rat
6492359Klra5-ps1killer cell lectin-like receptor, subfamily A, member 5, pseudogene 126421267264217862Rat
41231663Dpp3-ps3dipeptidyl peptidase 3, pseudogene 226429759364432049Rat
41232314Rpl13-ps13ribosomal protein L13, pseudogene 1326459573764596270Rat
41196986LOC120101348small nucleolar RNA SNORA1726516063165160712Rat
40995943LOC120100742uncharacterized LOC12010074226558793765606771Rat
1585807Knop1-ps1lysine-rich nucleolar protein 1, pseudogene 126567090865672736Rat
7662910LOC102552232uncharacterized LOC10255223226576716665819676Rat
1564125Cln5l1CLN5, intracellular trafficking protein like 126589349565902741Rat
2322932Ubap2-ps1ubiquitin-associated protein 2, pseudogene 126600754266009900Rat
1308343Cdh9cadherin 926628042266367121Rat
1583588Snap23-ps1synaptosome associated protein 23, pseudogene 126760413067609584Rat
40994990LOC120100997protein crumbs homolog 3-like26800073868003782Rat
41357925LOC12010099860S ribosomal protein L6-like26813098468132284Rat
41250842LOC120100745uncharacterized LOC12010074526853932368628612Rat
619741Cdh10cadherin 1026862862368850995Rat
41337724LOC120100746uncharacterized LOC12010074626865085668670949Rat
41335676Rbbp9-ps1RB binding protein 9, serine hydrolase, pseudogene 126867700268677554Rat
7505957LOC102553625uncharacterized LOC10255362526877889068939928Rat
7662935LOC102553734uncharacterized LOC10255373426898029469020038Rat
41135571LOC120100560uncharacterized LOC12010056026902009469020818Rat
1593220Smarce1-ps11SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, pseudogene 1126941461569417238Rat
1586190Ube2r2-ps1ubiquitin-conjugating enzyme E2R 2, pseudogene 126955210069554245Rat
41384167Ube2n-ps8ubiquitin-conjugating enzyme E2N, pseudogene 826977182569772236Rat
41123498LOC120101245small nucleolar RNA SNORA4427044660770446735Rat
1566350Cdh12cadherin 1227047467971705369Rat
41403201LOC120101087uncharacterized LOC12010108727050893070511875Rat
41102832LOC120101346small nucleolar RNA SNORA1727094241070942533Rat
1562936Hsp90ab1-ps6heat shock protein 90 alpha family class B member 1, pseudogene 627212525172129162Rat
7655727LOC102554147uncharacterized LOC10255414727215668172198344Rat
1305430Cdh18cadherin 1827281807673820144Rat
41287396Trnav-aac30transfer RNA valine (anticodon AAC) 3027284242772842507Rat
1561906RGD1561906similar to RIKEN cDNA 4930430F0827298438872986671Rat
7667725Hnrnpa1-ps52heterogeneous nuclear ribonucleoprotein A1, pseudogene 5227324733073249760Rat
41180045LOC120101302small nucleolar RNA SNORA1727347496673475097Rat
1596656Dda1-ps1DET1- and DDB1-associated 1, pseudogene 127382393973841395Rat
41315512Fus-ps4FUS RNA binding protein, pseudogene 427413938274141230Rat
41237332Rnu1-24RNA, U1 small nuclear 2427426084874261011Rat
1583285Hspd1-ps25heat shock protein family D (Hsp60) member 1, pseudogene 2527460975074613329Rat
11445903LOC108350231uncharacterized LOC10835023127481003074811049Rat
9429209LOC103691486uncharacterized LOC10369148627481148974842763Rat
7523639LOC102554929uncharacterized LOC10255492927510102975109556Rat
41206868Gapdh-ps84Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 8427533303175333975Rat
41232980LOC120100748uncharacterized LOC12010074827537125875412938Rat
621491Basp1brain abundant, membrane attached signal protein 127581613075863801Rat
1589753Cwc15-ps3CWC15 spliceosome-associated protein, pseudogene 327601664376017442Rat
1307193Myo10myosin X27610098976305619Rat
11403233LOC108349968uncharacterized LOC10834996827632408476333964Rat
1565003Retreg1reticulophagy regulator 127633560976474817Rat
11359058LOC10834996760S ribosomal protein L7a pseudogene27636625476367092Rat
1309146Zfp622zinc finger protein 62227647960576494405Rat
6494071Hnrnpm-ps1heterogeneous nuclear ribonucleoprotein M, pseudogene 127649878076500974Rat
1593219Rpl9-ps22ribosomal protein L9, pseudogene 2227660246676603113Rat
40928086LOC120101219U7 small nuclear RNA27664811376648175Rat
1559945Marchf11membrane associated ring-CH-type finger 1127689833076999690Rat
1305813Fbxl7F-box and leucine-rich repeat protein 727713977577509223Rat
41093744LOC120100752uncharacterized LOC12010075227726901677284684Rat
1595140Hsp90ab1-ps10heat shock protein 90 alpha family class B member 1, pseudogene 1027763955877641665Rat
41056389LOC120101320small nucleolar RNA SNORA1727767562177675749Rat
41137062Rnu2-24RNA, U2 small nuclear 2427770271777702836Rat
619925AnkhANKH inorganic pyrophosphate transport regulator27815302778280181Rat
41156512LOC120100754uncharacterized LOC12010075427817275178179652Rat
2324500OtulinOTU deubiquitinase with linear linkage specificity27829043778316633Rat
1563205OtulinlOTU deubiquitinase with linear linkage specificity like27840599478433860Rat
1308360Triotrio Rho guanine nucleotide exchange factor27850506978801384Rat
1595053Rpl19-ps11ribosomal protein L19, pseudogene 1127886883578869411Rat
1589269Krt18l1keratin 18 like 127891040078911742Rat
1560828Dnah5dynein, axonemal, heavy chain 527893778879255551Rat
11418901LOC10834997060S ribosomal protein L27 pseudogene27895282078953229Rat
41136923tuba1c-ps4tubulin, alpha 1C, pseudogene 427923675079237720Rat
1593760Kat8-ps1lysine acetyltransferase 8, pseudogene 127948501279486383Rat
7603843LOC102551226uncharacterized LOC10255122627963411579641114Rat
7740519LOC102551357uncharacterized LOC10255135727988846379939230Rat
2322903Actr3-ps1actin related protein 3, pseudogene 128008312880084348Rat
1592059Rps10-ps2ribosomal protein S10, pseudogene 228017473480175231Rat
41303141Rps19-ps9ribosomal protein S19, pseudogene 928024233180242836Rat
7530586LOC102551810uncharacterized LOC10255181028080543880830606Rat
41250438LOC120101317small nucleolar RNA SNORA1728089744680897577Rat
41016308LOC120101176U6 spliceosomal RNA28090851180908615Rat
41216266LOC120101293small nucleolar RNA SNORA1728098539980985530Rat
620734Ctnnd2catenin delta 228116852582016495Rat
7595026LOC102553378uncharacterized LOC10255337828154639981547681Rat
41208025LOC120101223U7 small nuclear RNA28159992081599980Rat
7671897LOC102553574uncharacterized LOC10255357428214070782173924Rat
41201453Rnu1-80RNA, U1 small nuclear 8028214836482148523Rat
41324632LOC120101300small nucleolar RNA SNORA1728217729582177424Rat
620641Dapdeath-associated protein28219920682251771Rat
41316876LOC120100757uncharacterized LOC12010075728223303882239128Rat
1564227Ankrd33bankyrin repeat domain 33B28227760482359420Rat
1591367Ropn1lrhophilin associated tail protein 1-like28244264582453332Rat
7678070LOC102553736uncharacterized LOC10255373628245355282454675Rat
1565757Marchf6membrane associated ring-CH-type finger 628245568682532917Rat
40962896Snora24small nucleolar RNA, H/ACA box 2428249077082490892Rat
1306952Cmblcarboxymethylenebutenolidase homolog28256925782591007Rat
735161Cct5chaperonin containing TCP1 subunit 528259175082602903Rat
1560629AtpsckmtATP synthase c subunit lysine N-methyltransferase28260308682618325Rat
2322522Wdr75-ps1WD repeat domain 75, pseudogene 128274957982751757Rat
41204457LOC120101303small nucleolar RNA SNORA1728279041782790548Rat
41145215LOC120101135U6 spliceosomal RNA28294449282944598Rat
620733Tas2r119taste receptor, type 2, member 11928323759583238602Rat
2323921Sdhaf4-ps1succinate dehydrogenase complex assembly factor 4, pseudogene 128324721183247542Rat
6502911LOC100909539uncharacterized LOC10090953928330666783309688Rat
41356687Snord123small nucleolar RNA, C/D box 12328330691883306987Rat
1308650Sema5asemaphorin 5A28330984383741084Rat
41068304LOC120101139U6 spliceosomal RNA28378219383782299Rat
41354863Zfp748-ps2zinc finger protein 748, pseudogene 228386111783866826Rat
1585655Hmgn4-ps8high mobility group nucleosomal binding domain 4, pseudogene 828407570184075971Rat
11447466Zfp712zinc finger protein 71228443107084479170Rat
6502425Zfp708zinc finger protein 70828447343684525070Rat
41209199Phaf1l-ps1phagosome assembly factor 1 like, pseudogene 128449504384497655Rat
40948588LOC120100761zinc finger protein 728-like28456268584618998Rat
2322273Zfp457zinc finger protein 45728462536084642535Rat
11457724LOC108349973zinc finger protein 728-like28466113584684994Rat
1559684Zfp458zinc finger protein 45828466115084705631Rat
628788Zfp455zinc finger protein 45528471243184733542Rat
1587849Rsl1regulator of sex limited protein 128473969484763617Rat
7564391Znf431l13zinc finger protein 431 like 1328478246384812216Rat
9153014D130040H23RiklRIKEN cDNA D130040H23 gene like28486716084869455Rat
6500592LOC100909964tyrosine-protein phosphatase non-receptor type substrate 1-like28501110285049473Rat
1309745Sirpb2signal-regulatory protein beta 228524867985278871Rat
2321536Sirpal1signal-regulatory protein alpha like 128551348485702291Rat
2321484Sirpa-ps1signal-regulatory protein alpha, pseudogene 128570705185849969Rat
7621135LOC102546663tyrosine-protein phosphatase non-receptor type substrate 1-like28602086986029938Rat
1587814Sirpb2l1signal-regulatory protein beta 2-like 128626781686280536Rat
1587796Tle4-ps1TLE family member 4, transcriptional corepressor, pseudogene 128631352786328412Rat
41252796Ap2s1-ps2adaptor related protein complex 2 subunit sigma 1, pseudogene 228633722386341061Rat
1586670Eif5a-ps2eukaryotic translation initiation factor 5A-pseudogene 228659869986599761Rat
2240Car2carbonic anhydrase 228674162586756766Rat
2241Car3carbonic anhydrase 328677041886780011Rat
1309780Car1carbonic anhydrase 128682943686872209Rat
1560453Car13carbonic anhydrase 1328692840186959525Rat
2320742Prxl2a-ps1peroxiredoxin like 2A, pseudogene 128695946986967653Rat
1565641Rbisribosomal biogenesis factor28698131486997352Rat
621357E2f5E2F transcription factor 528699733187012908Rat
628722Lrrcc1leucine rich repeat and coiled-coil centrosomal protein 128702567187060313Rat
1309208Slc7a12solute carrier family 7 (cationic amino acid transporter, y+ system), member 1228707972487146875Rat
40938153Slc7a13-ps1solute carrier family 7 member 13, pseudogene 128717656287177648Rat
41270292Slc7a13-ps2solute carrier family 7 member 13, pseudogene 228719242887193182Rat
1589989Slc7a12l1solute carrier family 7 (cationic amino acid transporter, y+ system), member 12 like 128721153487230685Rat
1305844RalylRALY RNA binding protein-like28748274788274329Rat
11380439LOC108349976eukaryotic translation initiation factor 1 pseudogene28778725287788140Rat
1588876Aldoa-ps5aldolase, fructose-bisphosphate A, pseudogene 528840179088402960Rat
6496250Tgap1l1GTPase activating protein testicular GAP1 like 128881243488947739Rat
2324778Txnl4al1thioredoxin-like 4A like 128893522189339701Rat
1593216Naa11-ps9N(alpha)-acetyltransferase 11, NatA catalytic subunit, pseudogene 928893544288937194Rat
9304207LOC103691505uncharacterized LOC10369150528897087588980334Rat
41266464LOC120101217U7 small nuclear RNA28934485789344915Rat
1588803Hspa8-ps32heat shock protein family A (Hsp70) member 8, pseudogene 3228939201989413186Rat
1588790Spic-ps1Spi-C transcription factor, pseudogene 128947153489495857Rat
41171310Trnaa-agc90transfer RNA alanine (anticodon AGC) 9029024024290240315Rat
1359558Tgap1GTPase activating protein testicular GAP129036277290436415Rat
1334307Or10ag62-ps1olfactory receptor family 10 subfamily AG member 62, pseudogene 129068544990686491Rat
2319570Eif1ax-ps1eukaryotic translation initiation factor 1A, X-linked, pseudogene 129074415190745318Rat
41099516LOC120101304small nucleolar RNA SNORA1729078950990789640Rat
2319479Vbp1l-ps1VHL binding protein 1 like, pseudogene 129098769290988247Rat
7561027LOC102553210uncharacterized LOC10255321029114641291174526Rat
9349712LOC103691511uncharacterized LOC10369151129127719591310476Rat
620295Snx16sorting nexin 1629133589691357622Rat
1564543Chmp4ccharged multivesicular body protein 4C29139172991428652Rat
40929196LOC120101172U6 spliceosomal RNA29143141591431521Rat
1309519Zfand1zinc finger AN1-type containing 129144449791457540Rat
1306036Slc10a5solute carrier family 10, member 529145754091458844Rat
69254Impa1inositol monophosphatase 129146278191484057Rat
40939054LOC120093158uncharacterized LOC12009315829150191891512455Rat
1565000Fabp12fatty acid binding protein 1229153956891554999Rat
69309Fabp4fatty acid binding protein 429158087991585567Rat
620285Fabp9fatty acid binding protein 929159184291595873Rat
41007682Rnu6-999RNA, U6 small nuclear 99929159791491598020Rat
41215037LOC120101159U6 spliceosomal RNA29160059691600702Rat
1585218Pmp2peripheral myelin protein 229161133491615252Rat
7544216LOC102546353uncharacterized LOC10254635329162840391653943Rat
70997Fabp5fatty acid binding protein 529176505691768716Rat
41317556LOC120100768uncharacterized LOC12010076829188775991893327Rat
620394Pag1phosphoprotein membrane anchor with glycosphingolipid microdomains 129193537892076937Rat
1563869Zfp704zinc finger protein 70429217180492356059Rat
40998579LOC120100770uncharacterized LOC12010077029219118092206415Rat
708377Zbtb10zinc finger and BTB domain containing 1029247525492509892Rat
41397126LOC120100771uncharacterized LOC12010077129259591192650648Rat
1306767Tpd52tumor protein D5229273536592816079Rat
1597461Mrps28mitochondrial ribosomal protein S2829282067692951302Rat
40942995LOC120101256small nucleolar RNA SNORA3829291670592916823Rat
1596973Tpm2-ps1tropomyosin 2, pseudogene 129297216292974217Rat
41372438LOC120101326small nucleolar RNA SNORA1729308335293083478Rat
621403Hey1hes-related family bHLH transcription factor with YRPW motif 129309660593100316Rat
1585007Dtd2-ps1D-aminoacyl-tRNA deacylase 2, pseudogene 129318698793187785Rat
68947Stmn2stathmin 229320469093252011Rat
11441417LOC108349981uncharacterized LOC10834998129355442093631719Rat
2321312Psmb6l1proteasome 20S subunit beta 6 like 129383391493834630Rat
11373688LOC108350177voltage-dependent anion-selective channel protein 1 pseudogene29388395993885694Rat
41084533Rpl34-ps5ribosomal protein L34, pseudogene 529391420293914762Rat
1593213Hdac1-ps11Histone deacetylase 1, pseudogene 1129391671293951253Rat
2322842Mrpl1-ps2mitochondrial ribosomal protein L1, pseudogene 229412396094124766Rat
11367342LOC108350232uncharacterized LOC10835023229413026794134883Rat
11374486LOC108350233glyceraldehyde-3-phosphate dehydrogenase pseudogene29416530994166476Rat
41058740LOC120100774uncharacterized LOC12010077429420871694235985Rat
2904Il7interleukin 729423521994280075Rat
1311970Zc2hc1azinc finger, C2HC-type containing 1A29428735294324655Rat
40938094LOC120101358small nucleolar RNA SNORA1729432602094326096Rat
621021PkiacAMP-dependent protein kinase inhibitor alpha29439886994473638Rat
1593212Tex2-ps1testis expressed 2, pseudogene 129472449594832001Rat
41007168Rnu6-33RNA, U6 small nuclear 3329486382594863931Rat
41121272LOC120101252small nucleolar RNA SNORA2/SNORA34 family29490730594907427Rat
7602661LOC102550295uncharacterized LOC10255029529498515695010035Rat
41054388LOC120101113U2 spliceosomal RNA29499570194995871Rat
41231648LOC120101221U7 small nuclear RNA29502419395024260Rat
41369417LOC120100775uncharacterized LOC12010077529504909495142066Rat
41035132LOC120101115U2 spliceosomal RNA29541335995413467Rat
7672274LOC102550696uncharacterized LOC10255069629546978795483680Rat
1564247Senp5-ps1SUMO specific peptidase 5, pseudogene 129550132695504553Rat
1598157Cbx3-ps5chromobox 3, pseudogene 529574235195742892Rat
11447753LOC108350179serine/arginine repetitive matrix protein 1 pseudogene29594844595950705Rat
41119034Pgk1-ps3phosphoglycerate kinase 1, pseudogene 329597267495974057Rat
61814Pex2peroxisomal biogenesis factor 229605038096072928Rat
1563022Zfhx4zinc finger homeobox 429622476396408245Rat
1585005Impdh1-ps1inosine monophosphate dehydrogenase 1, pseudogene 129641178396597628Rat
41275022LOC120101339small nucleolar RNA SNORA1729773968397739817Rat
2323618Paics-ps2phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase, pseudogene 229775675197760325Rat
1310102Hnf4ghepatocyte nuclear factor 4, gamma29788577398036650Rat
1305234Ythdf3YTH N6-methyladenosine RNA binding protein F329835030498384608Rat
2320862Mrpl42-ps2mitochondrial ribosomal protein L42, pseudogene 229879353498794355Rat
1595487Tpm3-ps2tropomyosin 3, pseudogene 229897571098984032Rat
40992991LOC120101332small nucleolar RNA SNORA1729920127799201403Rat
41065891Hnrnpk-ps3heterogeneous nuclear ribonucleoprotein K, pseudogene 329955215599552870Rat
40958534Arpc1a-ps1actin related protein 2/3 complex, subunit 1A, pseudogene 129958158399583561Rat
11384865LOC108349983uncharacterized LOC10834998329958496799985951Rat
41016982Eif2s3-ps1eukaryotic translation initiation factor 2 subunit gamma, pseudogene 129967190399686497Rat
41338792LOC120101249small nucleolar RNA SNORA4429982670099826807Rat
40960807LOC120100778uncharacterized LOC1201007782100126406100138972Rat
2325576Mir124-2microRNA 124-22100134866100134974Rat
41074493Prpf38a-ps1pre-mRNA processing factor 38A, pseudogene 12100370140100371030Rat
1305451Bhlhe22basic helix-loop-helix family, member e222100486400100489510Rat
2483Cyp7b1cytochrome P450 family 7 subfamily B member 12100502791100669713Rat
2320718Rpl30l3ribosomal protein L30-like 32100718361100718702Rat
40957973LOC120101264small nucleolar RNA SNORA482101035275101035413Rat
41377065LOC120100569uncharacterized LOC1201005692101100447101112987Rat
1560393Armc1armadillo repeat containing 12101608171101652198Rat
1304936Mtfr1mitochondrial fission regulator 12101678331101713547Rat
68391Pde7aphosphodiesterase 7A2101714767101806853Rat
40995327Rab5c-ps1RAB5C, member RAS oncogene family, pseudogene 12101841519101843700Rat
9271705LOC103691515uncharacterized LOC1036915152101871139101906931Rat
1591779Rpl13-ps12ribosomal protein L13, pseudogene 122101949431101950909Rat
1562486Dnajc5bDnaJ heat shock protein family (Hsp40) member C5 beta2101973726102066275Rat
1562890RGD1562890RGD15628902102083834102087515Rat
11431841Trnar-acg1transfer RNA arginine (anticodon ACG) 12102087287102087359Rat
41251936Trnay-gua8transfer RNA tyrosine (anticodon GUA) 82102087698102087791Rat
11467539Trnay-gua2transfer RNA tyrosine (anticodon GUA) 22102088114102088203Rat
1306943Trim55tripartite motif-containing 552102100229102142173Rat
41050540LOC120100781uncharacterized LOC1201007812102111026102124407Rat
620505Crhcorticotropin releasing hormone2102143055102144919Rat
1590660Cnot8-ps1CCR4-NOT transcription complex, subunit 8, pseudogene 12102238885102239831Rat
41307645Rnu6-767RNA, U6 small nuclear 7672102241494102241597Rat
11423168LOC108350235succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial pseudogene2102277631102278359Rat
1584592Rrs1-ps9ribosome biogenesis regulator 1 homolog, pseudogene 92102363614102365829Rat
2387Cpceruloplasmin2102439433102498075Rat
1310548Hps3HPS3, biogenesis of lysosomal organelles complex 2 subunit 12102484574102527580Rat
1309031Hltfhelicase-like transcription factor2102549724102609492Rat
621785Gyg1glycogenin 12102611888102653916Rat
1583489Eif4g1-ps1eukaryotic translation initiation factor 4 gamma 1, pseudogene 12102692061102697515Rat
2390Cpa3carboxypeptidase A32102712483102744219Rat
2391Cpb1carboxypeptidase B12102755241102785628Rat
2071Agtr1bangiotensin II receptor, type 1b2102844969102920232Rat
9444651LOC103690087uncharacterized LOC1036900872102968007103010870Rat
41073287LOC120100782uncharacterized LOC1201007822103099138103118399Rat
40982245Med14-ps2mediator complex subunit 14, pseudogene 22103120850103132587Rat
41095331LOC120101114U2 spliceosomal RNA2103674535103674695Rat
9452260Rpl9l4ribosomal protein L9 like 42104075117104075724Rat
41047054LOC120100783uncharacterized LOC1201007832104142697104168971Rat
41311750LOC120101269small nucleolar RNA SNORA482104246207104246348Rat
2322289Cnn3-ps1calponin 3, pseudogene 12104303471104304322Rat
9251158LOC103691517uncharacterized LOC1036915172104425901104428062Rat
41127021LOC120100786uncharacterized LOC1201007862104579402104641521Rat
41163397Rpl36-ps10ribosomal protein L36, pseudogene2104583202104583569Rat
41366980LOC120100784spindlin-1-like2104591976104592840Rat
1560053Tbl1xr1TBL1X/Y related 12104788950104929055Rat
41053528Zfp296-ps1zinc finger protein 296, pseudogene 12104997253104998556Rat
41112660LOC120101351small nucleolar RNA SNORA172105199664105199775Rat
41186814Htd2hydroxyacyl-thioester dehydratase type 22105222958105223419Rat
1598354Hspa8-ps33heat shock protein family A (Hsp70) member 8, pseudogene 332105493828105495874Rat
41043122LOC120101398U2 spliceosomal RNA2105678120105678309Rat
1587056Mapk6-ps1mitogen-activated protein kinase 6, pseudogene 12106158901106167330Rat
7590540LOC102551358uncharacterized LOC1025513582106301790106305272Rat
1565147Naaladl2N-acetylated alpha-linked acidic dipeptidase-like 22106639146107992218Rat
41318849LOC120101275small nucleolar RNA SNORA482107574094107574240Rat
621117Nlgn1neuroligin 12108256236109181530Rat
11461857LOC108350212uncharacterized LOC1083502122108700309108722522Rat
41328011LOC120101250small nucleolar RNA SNORA42/SNORA80 family2108935155108935294Rat
41069193Gapdh-ps85Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 852109075012109075960Rat
41385681Cul2-ps1cullin 2, pseudogene 12109228805109231740Rat
41310748LOC120101266small nucleolar RNA SNORA482109290944109291087Rat
1563726Spata16spermatogenesis associated 162109485287109865665Rat
7515013LOC102555118uncharacterized LOC1025551182109923841109934955Rat
1308524Ect2epithelial cell transforming 22109975813110037911Rat
41199834LOC120101329small nucleolar RNA SNORA172109994487109994611Rat
1311104Nceh1neutral cholesterol ester hydrolase 12110074985110135592Rat
1589592Mrpl54-ps1mitochondrial ribosomal protein L54, pseudogene 12110138456110138965Rat
41026528LOC120100787uncharacterized LOC1201007872110168359110176379Rat
7552390LOC102555450uncharacterized LOC1025554502110180475110181932Rat
628734Tnfsf10TNF superfamily member 102110199835110227239Rat
9303217LOC103691520U1 small nuclear ribonucleoprotein C pseudogene2110249020110249711Rat
621397Ghsrgrowth hormone secretagogue receptor2110268489110271865Rat
1311673Fndc3bfibronectin type III domain containing 3B2110311439110617504Rat
6501927Cdk1-ps1cyclin-dependent kinase 1, pseudogene 12110685743110688183Rat
11461178LOC10835023760S ribosomal protein L17 pseudogene2110714287110716284Rat
1563109Tmem212transmembrane protein 2122110775950110813313Rat
7656055LOC102555566uncharacterized LOC1025555662110790193110795730Rat
3349Pld1phospholipase D12110849205111047304Rat
41193090LOC120100789uncharacterized LOC1201007892111022776111026560Rat
40969953Rpl15-ps12ribosomal protein L15, pseudogene 122111062794111073127Rat
41109826LOC120100792uncharacterized LOC1201007922111081877111107974Rat
41320266LOC120100791uncharacterized LOC1201007912111084532111099039Rat
1561817TnikTRAF2 and NCK interacting kinase2111184352111587993Rat
3705Slc2a2solute carrier family 2 member 22111609798111639930Rat
1306196Eif5a2eukaryotic translation initiation factor 5A22111728587111746087Rat
1309517Rpl22l1ribosomal protein L22 like 12111754687111756623Rat
1594375Slc7a14solute carrier family 7, member 142112065286112171319Rat
41175922LOC120101379U1 spliceosomal RNA2112190391112190553Rat
71081Cldn11claudin 112112207745112221050Rat
621399SkilSKI-like proto-oncogene2112247047112275176Rat
7608682LOC102547718uncharacterized LOC1025477182112309535112312861Rat
620961Prkciprotein kinase C, iota2112321919112382305Rat
1307998Phc3polyhomeotic homolog 32112408709112483719Rat
40951160LOC120100793uncharacterized LOC1201007932112464844112475848Rat
1560200Gpr160G protein-coupled receptor 1602112483364112563072Rat
1308862Sec62SEC62 homolog, preprotein translocation factor2112570810112598198Rat
1308931Samd7sterile alpha motif domain containing 72112623135112644269Rat
41014742LOC120100794uncharacterized LOC1201007942112624574112639790Rat
1583267Gpx2-ps1glutathione peroxidase 2, pseudogene 12112645776112646636Rat
41079209LOC120100795uncharacterized LOC1201007952112654970112670357Rat
1583237Eif4e-ps6eukaryotic translation initiation factor 4E, pseudogene 62112677634112680165Rat
41187843Hspa8-ps28heat shock protein family A (Hsp70) member 8, pseudogene 282112694872112700652Rat
1561499Lrrc31leucine rich repeat containing 312112702844112725431Rat
2323202Lrriq4leucine-rich repeats and IQ motif containing 42112729298112756338Rat
1565052Lrrc34leucine rich repeat containing 342112752294112774463Rat
1307889Mynnmyoneurin2112779654112797188Rat
11410912Trnav-aac1transfer RNA valine (anticodon AAC) 12112797857112797929Rat
1561457Actrt3actin-related protein T32112799038112801065Rat
727802Terctelomerase RNA component2112815654112816041Rat
11417786LOC108350239serine/arginine-rich splicing factor 7 pseudogene2112821804112822748Rat
40927050LOC120100572uncharacterized LOC1201005722112859750112862038Rat
40958933LOC120101297small nucleolar RNA SNORA172112863681112863811Rat
1310997MecomMDS1 and EVI1 complex locus2112909353113464583Rat
1307225Egfem1EGF-like and EMI domain containing 12113721236114324547Rat
2325355Mir551bmicroRNA 551b2113989203113989300Rat
631398Kcnmb2potassium calcium-activated channel subfamily M regulatory beta subunit 22114670027114975374Rat
40930350LOC120101259small nucleolar RNA SNORA482115082698115082841Rat
620134Zmat3zinc finger, matrin type 32115106046115136888Rat
620916Pik3caphosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha2115175275115249034Rat
1311852Kcnmb3potassium calcium-activated channel subfamily M regulatory beta subunit 32115255788115270142Rat
1585689Zfp639zinc finger protein 6392115292431115305798Rat
621460Mfn1mitofusin 12115313380115359651Rat
1359321Gnb4G protein subunit beta 42115360746115400680Rat
7733168LOC102546477uncharacterized LOC1025464772115436848115439292Rat
41174350LOC120100797uncharacterized LOC1201007972115454205115463343Rat
41403567LOC120101270small nucleolar RNA SNORA482115455806115455946Rat
1307747Actl6aactin-like 6A2115492374115508401Rat
1307531Mrpl47mitochondrial ribosomal protein L472115507842115520093Rat
1305909Ndufb5NADH:ubiquinone oxidoreductase subunit B52115519248115533589Rat
40931824LOC120101231small nucleolar RNA SNORA702115536406115536531Rat
1306044Usp13ubiquitin specific peptidase 132115576912115689153Rat
708407Pex5lperoxisomal biogenesis factor 5-like2115694868115908365Rat
41095389LOC120100799uncharacterized LOC1201007992115921265115935617Rat
41055679LOC120101273small nucleolar RNA SNORA482116165324116165449Rat
2323670Rsrc2-ps1arginine and serine rich coiled-coil 2, pseudogene 12116424180116425501Rat
1310045Ttc14tetratricopeptide repeat domain 142116653543116665072Rat
1306277Ccdc39coiled-coil domain 39 molecular ruler complex subunit2116665651116703354Rat
11425228LOC108350240uncharacterized LOC1083502402116798678116804305Rat
41198720LOC120101341small nucleolar RNA SNORA172116803654116803785Rat
41010119LOC120100800uncharacterized LOC1201008002116825354116880012Rat
1311733Fxr1FMR1 autosomal homolog 12116884167116937590Rat
1560220Dnajc19DnaJ heat shock protein family (Hsp40) member C192116923272116945312Rat
9202401LOC103691527uncharacterized LOC1036915272116967994117589148Rat
41021129Ppid-ps11peptidylprolyl isomerase D, pseudogene 112117022912117024754Rat
11453452LOC108349992uncharacterized LOC1083499922117170935117210196Rat
41289236LOC120100802uncharacterized LOC1201008022117368023117386859Rat
1588992Hnrnpa3l1heterogeneous nuclear ribonucleoprotein A3 like 12117500942117501994Rat
1565646Sox2SRY-box transcription factor 22117536929117539340Rat
11438648LOC108350241uncharacterized LOC1083502412117604873117615829Rat
41183565LOC120100803uncharacterized LOC1201008032117717939117769039Rat
11440273LOC108349993uncharacterized LOC1083499932117917466117923638Rat
41366851Rbmxl1-ps1Rbmx like 1, pseudogene 12118217422118225582Rat
6504224Pramel7-ps1preferentially expressed antigen in melanoma-like 7, pseudogene 12118236522118237038Rat
2323451Rnps1-ps2RNA binding protein with serine rich domain 1, pseudogene 22118373339118374187Rat
41327895Gabarapl2-ps3GABA type A receptor associated protein like 2, pseudogene 32118499300118500311Rat
41355076Rnu6-1158RNA, U6 small nuclear 11582118570694118570798Rat
1561719Atp11bATPase phospholipid transporting 11B (putative)2118585348118691076Rat
1309668Dcun1d1defective in cullin neddylation 1 domain containing 12118721275118772606Rat
1310615Mccc1methylcrotonyl-CoA carboxylase subunit 12118799147118851181Rat
1585492Ccdc144bcoiled-coil domain containing 144B2118862790118924638Rat
727973Acad9acyl-CoA dehydrogenase family, member 92118943170118966150Rat
2323100Zfp267zinc finger protein 2672119017280119035885Rat
41098583Surf6-ps3surfeit 6, pseudogene 32119017398119027282Rat
1304917Arslarylsulfatase L2119038803119047579Rat
728380Qrfprpyroglutamylated RFamide peptide receptor2119053083119096864Rat
41370461Pou5f1-ps3POU class 5 homeobox 1, pseudogene 32119087448119088134Rat
2120Anxa5annexin A52119314007119344703Rat
11384727Smim43small integral membrane protein 432119380454119385966Rat
1307888Exosc9exosome component 92119416028119426981Rat
621059Ccna2cyclin A22119427239119433645Rat
1309264Bbs7Bardet-Biedl syndrome 72119434760119474665Rat
61973Trpc3transient receptor potential cation channel, subfamily C, member 32119481313119619333Rat
1593209Rpl7-ps22ribosomal protein L7, pseudogene 222119579381119580218Rat
1307100Bltp1bridge-like lipid transfer protein family member 12119708114119924697Rat
40993430Thumpd1-ps1THUMP domain containing 1, pseudogene 12119841868119842977Rat
1359309Adad1adenosine deaminase domain containing 12119948809120005920Rat
620047Il2interleukin 22120004862120009566Rat
1307384Il21interleukin 212120117105120127012Rat
1586489Cetn4centrin 42120199951120203311Rat
1561608Bbs12Bardet-Biedl syndrome 122120203396120221024Rat
2609Fgf2fibroblast growth factor 22120236328120290673Rat
621356Nudt6nudix hydrolase 62120289908120306197Rat
1310478Afg2aAFG2 AAA ATPase homolog A2120306417120497707Rat
41320820LOC120101257small nucleolar RNA SNORA512120460702120460834Rat
11433166LOC10835024260S ribosomal protein L7a pseudogene2120515068120515888Rat
1309293Spry1sprouty RTK signaling antagonist 12120557256120561917Rat
41101418LOC120101158U6 spliceosomal RNA2120627911120628017Rat
11469315LOC108349999glyceraldehyde-3-phosphate dehydrogenase pseudogene2120637580120646553Rat
1592058Lgals9-ps1galectin 9, pseudogene 12120683705120684762Rat
11513955LOC108350243uncharacterized LOC1083502432120709996120711737Rat
41115179LOC120101292small nucleolar RNA SNORA172120737785120737921Rat
11356258LOC10835000060S ribosomal protein L26 pseudogene2120769981120770431Rat
1585003Phgdh-ps5phosphoglycerate dehydrogenase, pseudogene 52120910507120917522Rat
41183015LOC120101309small nucleolar RNA SNORA172120976196120976326Rat
41045573LOC120100575uncharacterized LOC1201005752121117806121124162Rat
11379162LOC108350184keratin-associated protein 4-4-like2121142630121143406Rat
11373430Rps6-ps3ribosomal protein S6, pseudogene 32121167632121248902Rat
1564378Rpl23al3ribosomal protein L23A like 32121429593121434236Rat
1311665Ankrd50ankyrin repeat domain containing 502121466275121500758Rat
9384455LOC103691533uncharacterized LOC1036915332121577718121606017Rat
41284427LOC120100576uncharacterized LOC1201005762121636924121653275Rat
1564291Fat4FAT atypical cadherin 42121927266122056700Rat
1582963Eif4a1-ps6eukaryotic translation initiation factor 4A1, pseudogene 62122325531122326261Rat
1593207Phgdh-ps7phosphoglycerate dehydrogenase, pseudogene 72122368911122370490Rat
41143528LOC120101334small nucleolar RNA SNORA172122823020122823149Rat
2322140Nt5c2-ps35'-nucleotidase, cytosolic II, pseudogene 32123256219123257818Rat
9245979LOC103695116serine/arginine-rich splicing factor 3 pseudogene2123371369123371904Rat
7573616LOC102550593uncharacterized LOC1025505932123397907123402098Rat
41325496LOC120100807uncharacterized LOC1201008072123403964123505271Rat
1309446Intuinturned planar cell polarity protein2123600972123685331Rat
2321897Mynn-ps1myoneurin, pseudogene 12123685457123688592Rat
1596195Slc25a31solute carrier family 25 member 312123695387123711275Rat
1306528Hspa4lheat shock protein family A (Hsp70) member 4 like2123740384123793088Rat
1305390Plk4polo-like kinase 42123802527123820942Rat
1310132Mfsd8major facilitator superfamily domain containing 82123822042123847808Rat
41373813Fundc2-ps1FUN14 domain containing 2, pseudogene 12123853238123855281Rat
1563987Abhd18abhydrolase domain containing 182123872299123920987Rat
1359533Fundc2bFUN14 domain containing 2B2123877836123880083Rat
1307509Larp1bLa ribonucleoprotein 1B2123936057123969254Rat
1565989Larp1blLa ribonucleoprotein 1B like2123969408124031645Rat
1308804Pgrmc2progesterone receptor membrane component 22124068257124084155Rat
41163150LOC120100809histone H3.v1-like2124209284124215591Rat
41397384LOC120100577uncharacterized LOC1201005772124222575124229453Rat
41242725LOC120100810uncharacterized LOC1201008102124384875124400228Rat
41105572LOC120101226small nucleolar RNA SNORD222124425037124425161Rat
7516893LOC102553773uncharacterized LOC1025537732124459201124469318Rat
1306920Jade1jade family PHD finger 12124543233124596361Rat
628721Sclt1sodium channel and clathrin linker 12124605445124763964Rat
1359508C2h4orf33similar to human chromosome 4 open reading frame 332124764263124830001Rat
41012974LOC12010057840S ribosomal protein S21-like2125345379125346298Rat
40974057LOC120100811uncharacterized LOC1201008112125776559125802118Rat
1563847Kpna1-ps5karyopherin subunit alpha 1, pseudogene 52125884647125886767Rat
1559967Pkm-ps6pyruvate kinase M1/2, pseudogene 62126044233126045499Rat
2321697Spryd7-ps1SPRY domain containing protein 7, pseudogene 12126157686126158233Rat
6486316Hnrnpf-ps1heterogeneous nuclear ribonucleoprotein F, pseudogene 12126606819126618488Rat
1593483Wdr61-ps1WD repeat domain 61, pseudogene 12127443608127444600Rat
2321502Ewsr1-ps1EWS RNA-binding protein 12127988248127990520Rat
1592323Riox2-ps6ribosomal oxygenase 2, pseudogene 62128448551128451089Rat
41091330LOC120100812uncharacterized LOC1201008122128494120128525138Rat
1565811Pcdh10protocadherin 102128617212128683354Rat
2321898Ran-ps3RAN, member RAS oncogene family, pseudogene 32128705723128707749Rat
1593206Aldoa-ps6aldolase, fructose-bisphosphate A, pseudogene 62128740774128742056Rat
1587345Hspa8-ps18heat shock protein family A (Hsp70) member 8, pseudogene 182129109508129111050Rat
41068108LOC120101285small nucleolar RNA SNORA172129578379129578510Rat
1591091Dmtf1-ps1cyclin D binding myb-like transcription factor 1, pseudogene 12129668961129671126Rat
1559517Pabpc4lpoly(A) binding protein, cytoplasmic 4-like2129807755129809745Rat
9191676LOC103691547histone H3-like2129998520129998912Rat
41307398LOC120100579uncharacterized LOC1201005792130410255130411375Rat
41396004LOC120101335small nucleolar RNA SNORA172130664190130664323Rat
41206294LOC120101267small nucleolar RNA SNORA482130780074130780217Rat
1563562Tgap1l11GTPase activating protein testicular GAP1 like 112131029791131092039Rat
9251686Tgap1l3GTPase activating protein testicular GAP1 like 32131121784131190097Rat
1595598Tgap1l8GTPase activating protein testicular GAP1 like 82131215856131280563Rat
7516215Tgap1l12GTPase activating protein testicular GAP1 like 122131292205131645662Rat
1589949Tgap1l9GTPase activating protein testicular GAP1 like 92131691178131736078Rat
41164989LOC120101107U2 spliceosomal RNA2131736220131736350Rat
1564926Tgap1l6GTPase activating protein testicular GAP1 like 62131750076131797706Rat
1589926Phb1-ps17prohibitin 1, pseudogene 172131812324131822672Rat
11465045LOC10835024760S ribosomal protein L35 pseudogene2132271714132272066Rat
9101027Rpl31l11ribosomal protein L31 like 112132272163132272636Rat
1593205Hdac1-ps19Histone deacetylase 1, pseudogene 192132478743132480642Rat
1307595Erhl1ERH, mRNA splicing and mitosis factor like 12132570276132573582Rat
1593204Hspa8-ps8heat shock protein family A (Hsp70) member 8, pseudogene 82133005896133007805Rat
2321698Pacrgl-ps1parkin coregulated like, pseudogene 12133152880133154412Rat
7642297LOC102550446rho GTPase-activating protein 20-like2133296630133407312Rat
41233265LOC120100814rho GTPase-activating protein 20-like2133422096133454718Rat
1359174Tgap1l5GTPase activating protein testicular GAP1 like 52133471326133509594Rat
40975337LOC120100815rho GTPase-activating protein 20-like2133520135133559812Rat
41092931LOC120093152rho GTPase-activating protein 20-like2133570229133603645Rat
1305870Pcdh18protocadherin 182133831996133845992Rat
2319549Samd3-ps1sterile alpha motif domain containing 3, pseudogene 12134161363134162203Rat
1587573Rpl18a-ps6ribosomal protein L18A, pseudogene 62134326599134329443Rat
2319355Adrm1-ps1ADRM1 26S proteasome ubiquitin receptor, pseudogene 12134333526134334743Rat
1309275Slc7a11solute carrier family 7 member 112134382002134517622Rat
41179476LOC120101127U4 spliceosomal RNA2134528655134528788Rat
40954669LOC120100816uncharacterized LOC1201008162134801684134810909Rat
40977691LOC120101306small nucleolar RNA SNORA172134854326134854445Rat
1587344Noctnocturnin2135271189135291407Rat
1310585Elf2E74 like ETS transcription factor 22135292291135385942Rat
11426711Trnap-ugg2transfer RNA proline (anticodon UGG) 22135401149135401220Rat
11486967Trnap-agg4transfer RNA proline (anticodon AGG) 42135402136135402207Rat
1586369Mgarpmitochondria-localized glutamic acid-rich protein2135431283135439425Rat
1586362Ndufc1NADH:ubiquinone oxidoreductase subunit C12135447067135450950Rat
1310984Naa15N(alpha)-acetyltransferase 15, NatA auxiliary subunit2135458018135520756Rat
1308353Rab33bRAB33B, member RAS oncogene family2135528116135538719Rat
11385321LOC10835000860S ribosomal protein L35a pseudogene2135531741135532151Rat
1586346Setd7SET domain containing 7, histone lysine methyltransferase2135562683135605468Rat
11392116LOC108350009uncharacterized LOC1083500092135662680135667922Rat
1311218Mgst2microsomal glutathione S-transferase 22135679524135715828Rat
1308177Maml3mastermind-like transcriptional coactivator 32135720431136137829Rat
1588275Eif4e-ps3eukaryotic translation initiation factor 4E, pseudogene 32136283646136284398Rat
620283Foxo1forkhead box O12136312168136390603Rat
7608249LOC102546847uncharacterized LOC1025468472136685343136695240Rat
11483277Trnak-cuu5transfer RNA lysine (anticodon CUU) 52136753070136753142Rat
7663391LOC102547111uncharacterized LOC1025471112136942896137033178Rat
41372747LOC120100818uncharacterized LOC1201008182137032199137034329Rat
1303283Cog6component of oligomeric golgi complex 62137062127137099176Rat
1560177Lhfpl6LHFPL tetraspan subfamily member 62137126485137324442Rat
41343568LOC120100819uncharacterized LOC1201008192137269261137286537Rat
11386619LOC10835018760S ribosomal protein L39 pseudogene2137421238137421432Rat
1565414Nhlrc3NHL repeat containing 32137527843137542258Rat
7631535Nhp2-ps1NHP2 ribonucleoprotein, pseudogene 12137531853137534519Rat
1309403Proser1proline and serine rich 12137542378137561767Rat
1311090Stoml3stomatin like 32137572691137582402Rat
40999832LOC120101356small nucleolar RNA SNORA172137598603137598719Rat
1566012Frem2FRAS1 related extracellular matrix 22137602784137740785Rat
2318910C1h15orf40-ps1similar to human chromosome 15 open reading frame 40, pseudogene 12137775820137776319Rat
1588592Prdx1-ps8peroxiredoxin 1, pseudogene 82137826256137826912Rat
1304890Ufm1ubiquitin-fold modifier 12137969476137977620Rat
7623948LOC102549721uncharacterized LOC1025497212138182296138232451Rat
621276Trpc4transient receptor potential cation channel, subfamily C, member 42138307676138476856Rat
1305285Postnperiostin2138527714138559098Rat
1590821Dusp14l1dual specificity phosphatase 14-like 12138738130138739473Rat
1564472Rexo1l1-ps1REX1, RNA exonuclease 1 homolog-like 1, pseudogene 12138834049138838838Rat
40952217Trnaa-agc74transfer RNA alanine (anticodon AGC) 742138840829138840903Rat
40964986Trnaa-ggctransfer RNA alanine (anticodon GGC)2138866655138866735Rat
1307812Supt20hSPT20 homolog, SAGA complex component2138897316138930493Rat
1306169Exosc8exosome component 82138930405138937009Rat
1308900Alg5ALG5, dolichyl-phosphate beta-glucosyltransferase2138936998138951228Rat
71004Smad9SMAD family member 92138956326139006315Rat
40992880LOC120100820uncharacterized LOC1201008202138991377138999932Rat
1565351Rfxapregulatory factor X-associated protein2139008052139012235Rat
1597355Sertm1serine-rich and transmembrane domain containing 12139086905139106528Rat
1310639Ccna1cyclin A12139231738139278066Rat
1305900Spartspartin2139292630139319248Rat
1593170Ccdc169coiled-coil domain containing 1692139321644139351161Rat
1589577Sohlh2spermatogenesis and oogenesis specific basic helix-loop-helix 22139362246139384700Rat
41398125LOC120101148U6 spliceosomal RNA2139378366139378472Rat
68437Dclk1doublecortin-like kinase 12139417234139710956Rat
7581938LOC102552324uncharacterized LOC1025523242139569183139577314Rat
1562629Nbeaneurobeachin2139780021140338639Rat
7726710LOC102552834uncharacterized LOC1025528342139906425139915076Rat
1589984Mab21l1mab-21 like 12139943496139945885Rat
7664166LOC102552778uncharacterized LOC1025527782139990888139994618Rat
41237368LOC120101340small nucleolar RNA SNORA172140311336140311463Rat
41022771LOC120101343small nucleolar RNA SNORA172140617246140617361Rat
1560498Eif3i-ps1eukaryotic translation initiation factor 3, subunit I, pseudogene 12140669273140670304Rat
7507353Nsa2-ps23NSA2 ribosome biogenesis factor, pseudogene 232140781011140781859Rat
41145339LOC120100824uncharacterized LOC1201008242140835560140873684Rat
1309652Tm4sf1transmembrane 4 L six family member 12141456950141466146Rat
1563943Mcm4-ps1minichromosome maintenance complex component 4, pseudogene 12141550579141554296Rat
41329676LOC120101218U7 small nuclear RNA2141562874141562937Rat
621784Tm4sf4transmembrane 4 L six family member 42141570321141621263Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10121D2Mco341922102854285102854485Ratregion
10122D2Mco352762102853080102853371Ratregion
10319D2Mco4121227381172573811941Ratregion
10387D2Mgh261312102771168102771306Ratregion
11155D2Wox1418225932445459324636Ratregion
11156D2Mit2431025932437759324691Ratregion
33824D2Mit418826158212361582311Ratregion
33983D2Mit232642141596551141596857Ratregion
34114D2Mgh151502141194931141195087Ratregion
34190D2Mgh1915028357507283575226Ratregion
34383D2Mgh51232103794961103795077Ratregion
34487D2Mgh330426251660962516896Ratregion
34497D2Mgh241502135552383135552573Ratregion
33555D2Mit261322112844451112844585Ratregion
33620D2Mit618927653932276539510Ratregion
33674D2Mit171902106741551106741741Ratregion
33739D2Mit531826611827566118463Ratregion
33745D2Mit181932105378114105378297Ratregion
33765D2Mit352642127469220127469484Ratregion
35995D2Rat282712104814877104815148Ratregion
36017D2Rat7413026917384469173974Ratregion
36201D2Rat331762113721113113721293Ratregion
37232D2Rat1832092139096736139096945Ratregion
37274D2Rat13524928745171787451978Ratregion
37332D2Rat1041462109095976109096120Ratregion
37456D2Rat1471912133914684133914867Ratregion
37474D2Rat27620928219398082194185Ratregion
35222D2Rat3021582122846256122846419Ratregion
36850D2Rat2016025994328659943463Ratregion
36918D2Rat2415629822659898226760Ratregion
37016D2Rat301642112103657112103813Ratregion
37122D2Rat1172022132558903132559105Ratregion
37132D2Rat14412527689708576897216Ratregion
37146D2Rat792002120958038120958240Ratregion
37664D2Rat16721527799114877991361Ratregion
37682D2Rat1021002121121975121122075Ratregion
37768D2Rat1661462140636016140636154Ratregion
37816D2Rat14521729044253590442742Ratregion
37952D2Rat1231552109366814109366971Ratregion
37990D2Rat1772002105378063105378253Ratregion
36466D2Rat341742136916935136917119Ratregion
36478D2Rat311522106573059106573211Ratregion
36578D2Rat782762115404101115404368Ratregion
36693D2Rat7514227866561678665758Ratregion
34807D2Rat291302105561590105561720Ratregion
34882D2Rat771722111263994111264166Ratregion
34914D2Rat2317428766843287668614Ratregion
34914D2Rat2317428766843287668614Ratregion
35066D2Rat801412122378211122378352Ratregion
35142D2Rat2212726846286068462973Ratregion
35148D2Rat2713029435940794359546Ratregion
35643D2Rat2111327478666474786777Ratregion
35729D2Rat2514929923679099236961Ratregion
35929D2Rat12212929634548996345626Ratregion
39616D2Rat2562262140397825140398049Ratregion
39816D2Rat3001712117484680117484853Ratregion
39820D2Rat2552162123943856123944072Ratregion
39828D2Rat20423527613654776136768Ratregion
38256D2Rat1152132130923272130923501Ratregion
38266D2Rat1362152117951309117951518Ratregion
38362D2Rat1611482114837527114837675Ratregion
38386D2Rat1582032121602339121602542Ratregion
40462D2Rat2801452111362447111362592Ratregion
40466D2Rat3031672127460743127460910Ratregion
40470D2Rat29917026353190063532066Ratregion
40478D2Rat27723728234589382346118Ratregion
40560D2Rat27316327441756774417754Ratregion
40612D2Rat2781302102104121102104430Ratregion
40612D2Rat2781302102104314102104430Ratregion
38488D2Rat1602492110560547110560803Ratregion
38592D2Rat11321429154614191546365Ratregion
38610D2Rat1432452103518774103519040Ratregion
38626D2Rat1711372112456140112456288Ratregion
38726D2Rat16314629032856090328721Ratregion
40074D2Rat20713727305587573056016Ratregion
38960D2Rat932052129164097129164302Ratregion
38962D2Rat961492114587899114588046Ratregion
39046D2Rat17522325943983459440061Ratregion
39090D2Rat1802282117776691117776935Ratregion
39164D2Rat1592002121850141121850343Ratregion
39170D2Rat17418225974481759745001Ratregion
39216D2Rat9521428231645282316662Ratregion
39242D2Rat982152126966230126966445Ratregion
39274D2Rat1402472104265184104265437Ratregion
39370D2Rat21213828168982681689944Ratregion
39388D2Rat21320029511671195116915Ratregion
39512D2Rat21013828112456881124716Ratregion
42117D2Arb4223026499184564992091Ratregion
42119D2Arb633525932430759324662Ratregion
42287D2Rat37120727387824373878442Ratregion
42288D2Rat33024229175339291753616Ratregion
42289D2Rat3731202140171409140171528Ratregion
41152D2Rat2201382137154180137154326Ratregion
41184D2Rat2191762132082925132083097Ratregion
41188D2Rat20622226864256868642799Ratregion
41300D2Rat2211672140689412140689571Ratregion
41358D2Rat2171602118111229118111368Ratregion
41464D2Rat2153302103309145103309441Ratregion
41484D2Rat2181262120346103120346217Ratregion
42576D2Rat27114526030523460305371Ratregion
42577D2Rat32020726185874561858937Ratregion
42578D2Rat32223927324535973245596Ratregion
42579D2Rat32320727355816973558384Ratregion
42581D2Rat32412328197420681974307Ratregion
42582D2Rat32514328325069983250839Ratregion
42584D2Rat32724928409485284095107Ratregion
42585D2Rat32821028346875083468912Ratregion
42586D2Rat33221529415028194150482Ratregion
42587D2Rat32921929991151999911741Ratregion
42590D2Rat3352422109002666109002905Ratregion
42593D2Rat3371432114141640114141782Ratregion
42594D2Rat3382172114615241114615477Ratregion
42598D2Rat3872412137784120137784356Ratregion
40780D2Rat2222382140253741140253961Ratregion
40844D2Rat21120128182992381830126Ratregion
41000D2Rat20314927585924275859387Ratregion
41038D2Rat21411929265932992659444Ratregion
41670D2Rat3012052122603934122604139Ratregion
41744D2Rat27914929907464499074799Ratregion
41758D2Rat27220027668044076680636Ratregion
41788D2Rat27520828175453081754745Ratregion
41838D2Rat3722442121181567121181814Ratregion
41894D2Rat33113129895627398956398Ratregion
44552D9Wox2113627196810571968162Ratregion
44552D9Wox2113627919041979190476Ratregion
44590D9Got441612104935118104935281Ratregion
43494D2Got3210527548632275486427Ratregion
43500D2Got18314426630034766300491Ratregion
43501D2Got4421327036780870368021Ratregion
43502D2Got3624427750311977503363Ratregion
43503D2Got3812727734517377345300Ratregion
43505D2Got3712927772448077724609Ratregion
43507D2Wox2819027960689479607078Ratregion
43508D2Got4628628320380083204086Ratregion
43510D2Got3322928195690881957137Ratregion
43512D2Got4119728189140881891603Ratregion
43513D2Got4019727508870075088897Ratregion
43517D2Got6815829175339291753550Ratregion
43518D2Got7314529174503291745177Ratregion
43519D2Got6415129302661593026768Ratregion
43521D2Got7018729375581993756006Ratregion
43524D3Got1152022120490082120490284Ratregion
43525D2Got671782115536109115536287Ratregion
43526D2Got741402122116180122116320Ratregion
43527D2Got5316729631930696319473Ratregion
43529D2Got5817129468053794680708Ratregion
43530D2Got811432125071448125071591Ratregion
43531D2Got892072131503149131503351Ratregion
43540D2Got971602137331233137331393Ratregion
43541D2Got1042222137514111137514333Ratregion
43543D2Got991792136468714136468893Ratregion
60796D2Wox61822112166180112166356Ratregion
60798D2Wox91462136445150136445286Ratregion
60320D2Got3413027590413575904265Ratregion
60324D2Got4719126898344468983634Ratregion
60326D2Got491862105215501105215689Ratregion
60327D2Got502242106426481106426705Ratregion
60329D2Got521162101077038101078259Ratregion
60329D2Got521162101078143101078259Ratregion
60330D2Got5519529775616897756365Ratregion
60331D2Got5627029810354898103818Ratregion
60332D2Got5717129792988597930056Ratregion
60335D2Got622332112291717112291950Ratregion
60337D2Got662442112187566112187814Ratregion
60338D2Got692512111809778111810029Ratregion
60339D2Got751482118768579118768724Ratregion
60340D2Got761992121862427121862626Ratregion
60341D2Got771772119519366119519543Ratregion
60342D2Got782672119686278119686545Ratregion
60343D2Got792622109776051109776313Ratregion
60346D2Got821602121165735121165895Ratregion
60347D2Got831942122263863122264057Ratregion
60348D2Got841222129127491129127613Ratregion
60349D2Got852852128982454128982739Ratregion
60353D2Got902022130930745130930947Ratregion
60354D2Got921552133234754133234909Ratregion
60355D2Got932442135818873135819116Ratregion
60356D2Got942752134628859134629134Ratregion
60357D2Got951912134388649134388840Ratregion
60359D2Got982972136549981136550275Ratregion
60278D2Got1011062138863999138864105Ratregion
60279D2Got1021522138038724138038876Ratregion
60280D2Got1031152139323630139323745Ratregion
60312D2Got1841362107565811107565947Ratregion
60313D2Got1871162111190665111190781Ratregion
60314D2Got19625129841090298411157Ratregion
67827D2Uwm2910726073165260731732Ratregion
625765D2Got601352100773874100774009Ratregion
62511D2Uia92192135944736135944955Ratregion
66432D9Mco728526844340268443753Ratregion
66480D2Uia151322140734737140734869Ratregion
66482D2Uia1621029978953899789748Ratregion
66648D2Mco102302133886747133886992Ratregion
66650D2Mco111202116140115116140240Ratregion
66651D2Mco1219428076214780762364Ratregion
66657D2Mco164002102202080102202499Ratregion
66659D2Mco1714327499775974997963Ratregion
66661D2Mco1813927866561978665763Ratregion
66731D2Mco362402107641164107641424Ratregion
67324D2Arb341742104145423104145597Ratregion
67325D2Arb353022104141534104141838Ratregion
67749D2Uwm3022626198885061989099Ratregion
67750D2Uwm3119727899766278997855Ratregion
67770D2Uwm613729823746598237600Ratregion
67780D2Uwm81742114699203114699377Ratregion
67785D2Uwm91572135790985135791136Ratregion
67803D2Uwm201382123231171123231297Ratregion
1358000D2Chm1132482140708701140708949Ratregion
1358019D2Chm1221972139401804139402001Ratregion
1358030D2Chm332092137219876137220085Ratregion
1630140D2Ulb102111388724111389025Ratregion
1630515D2Ulb819927892342178923620Ratregion
1630697D2Got3292032120671230120671431Ratregion
1630943D2Got4082772111144022111144299Ratregion
1630974D2Got31411926111683761116951Ratregion
1631348D2Ulb1627427799718577997459Ratregion
1631772D2Uia1810529368481193684916Ratregion
1631852D2Got383942135832101135832195Ratregion
1632110D2Mco471812136963316136963497Ratregion
1578914D2Chm29624427255502672555272Ratregion
1579021D2Chm17225027879433478794584Ratregion
1579111D2Chm29424126771746367717704Ratregion
1579114D2Chm29924227374444373744685Ratregion
1627859D2Got39728626244281862443104Ratregion
1628294D2Got40119426110233161102520Ratregion
1628349D2Wox4822429159359791593821Ratregion
1629043D2Got31617725996910259969279Ratregion
1629907D2Ulb1821329374284993743062Ratregion
1629982D2Got3981412111545367111545506Ratregion
1638728D2Got32322729142947191429834Ratregion
1638728D2Got32322729142960791429834Ratregion
1640910D2Got4331822135659785135659967Ratregion
1640916D2Got4361412124102336124102477Ratregion
1640946D2Got3311482140790294140790442Ratregion
1641164D2Got4351792126347435126347612Ratregion
1639722D2Got4322872138555474138555761Ratregion
1632736D2Got32014726404621364046360Ratregion
1632808D2Ulb714925979644859796597Ratregion
1633103D2Got3301382122601409122601547Ratregion
1633230D2Got31922226443107164431288Ratregion
1639967D2Got41621829627894296279160Ratregion
1640396D2Got4231512123258917123259068Ratregion
1640406D2Got4171392123340252123340389Ratregion
1640758D2Got32416128786440087864550Ratregion
1635087D2Ulb910829187251491872622Ratregion
1635435D2Got31711826358755263587670Ratregion
1635810D2Got40426328483136884831631Ratregion
1636242D2Got38027725996340259963675Ratregion
1636528D2Got33213129712193897121971Ratregion
1636630D2Wox571572115111296115111453Ratregion
1636863D2Got3281772112776089112776268Ratregion
1636921D2Got32110727548631975486426Ratregion
1637376D2Got31510726027751160277618Ratregion
1638455D2Got42716429434871394348877Ratregion
1638470D2Wox552352102438708102438945Ratregion
1633796D2Got38112027858043978580561Ratregion
1633857D2Got39129629822572398226023Ratregion
1633981D2Cebr211029302526093025370Ratregion
1634150D2Wox541802102437904102438084Ratregion
1634240D2Got3731852110039882110040069Ratregion
1634455D2Got4001482114421482114421630Ratregion
1634704D2Got32511228728944787289559Ratregion
1634762D2Got3271952104661421104661616Ratregion
7206720D3Mit271852113202571113202656Ratregion
7205972Trpc41092138476205138476314Ratregion
7192218Sox23302117538902117539232Ratregion
7193097BI2810071812137324111137324292Ratregion
7193060Sox21312117537801117537932Ratregion
7364905rs106982173029335364293353642Ratregion
7206294Spic60228949525389495855Ratregion
7205884UniSTS:2570812592115218994115219253Ratregion
7205884UniSTS:2570812592115218994115219253Ratregion
7205886px-34a8029561454495614717Ratregion
7206792RH1243264492104592140104592589Ratregion
5035747D5S23179928201556082015659Ratregion
5035771PMC165967P743329564014295640575Ratregion
5035787PMC17879P158326093163460932217Ratregion
5035957PMC317048P17492119429240119429989Ratregion
5038672BB21001212229940220199402323Ratregion
5038754RH1273131912102608853102609044Ratregion
5038880RH12738621925995793659958155Ratregion
5038960RH1274321912115359236115359426Ratregion
5036217UniSTS:1423991432113402338113402481Ratregion
5036219D3Nds641372119595428119595565Ratregion
5036366UniSTS:143556702120009437120009507Ratregion
5036370Il716529427864694278811Ratregion
5039234RH12758919028677048386770666Ratregion
5036510Stk181912123808409123808600Ratregion
5039124RH12752619228225150582251697Ratregion
5036573AU0484731632114191426114191466Ratregion
5036701AU04892010328834051488340617Ratregion
5036757AU0491061562110252246110252402Ratregion
5036761AU04911917026382061163820781Ratregion
5036855AU04942318627813367778133863Ratregion
5036991AU0498451642135049733135049897Ratregion
5037031AU04998217126202042162020592Ratregion
5035526C130041O22Rik39129622746996227860Ratregion
5035542Mrpl40025947112759471615Ratregion
5035608D8S1385E11029320479093204900Ratregion
5035633A001Y0410729838443498384541Ratregion
5035651U859362362133886688133887009Ratregion
5035697D6S15606032124366502124367105Ratregion
5033853RH1403631792123622939123623118Ratregion
5033855RH14037116327850521078505373Ratregion
5028713A009S3514828742665987426807Ratregion
5028735STS-AA00978116027649421376494373Ratregion
5028741RH4595015429622758096227734Ratregion
5031524AU04804523429042244190422672Ratregion
5031524AU04804523429042244190422692Ratregion
5028771RH1422681632135714946135715702Ratregion
5028845RH1425491122112816146112816258Ratregion
5031618AU0477181792140646980140647159Ratregion
5034193RH1417191802137155101137155281Ratregion
5026394RH1320371932138550436138550629Ratregion
5028963RH1429911162140779374140779490Ratregion
5029011RH1431771112138991502138991613Ratregion
5034422BE1177721592109996795109996954Ratregion
5029201RH1439011972100134296100134493Ratregion
5031896AU0467879029856139898561488Ratregion
5034606BI2810071592137324112137324271Ratregion
5026728RH1333092022137970683137970885Ratregion
5029241RH14404912127853262778532748Ratregion
5029365RH1445202772104142717104142994Ratregion
5032105RH944181702120291028120291198Ratregion
5034814AA9429791792121466298121466477Ratregion
5029543BG3754471372101255007101255143Ratregion
5032253AU017667902102612002102612092Ratregion
5032349AI4514111222111580792111580914Ratregion
5032351AI4505441212138918413138918534Ratregion
5026982RH1342751852135538305135538491Ratregion
5032475D15Ertd600e20627630395576304161Ratregion
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5084076AI0117642372135595954135596191Ratregion
5084082AI23323321429606611996066333Ratregion
5084710AI1026902102118724677118724887Ratregion
5090005AU0494931772134901075134901252Ratregion
5090039AU04951428828182557581825865Ratregion
5090181AU04959910427831235478312458Ratregion
5084292AA8501001662119426641119426811Ratregion
5081933BE11878420328747845287478655Ratregion
5082023BF4156731592140310302140310461Ratregion
5085048UniSTS:2563876912102846187102846878Ratregion
5087983UniSTS:14372202125886718125886898Ratregion
5082339BI2745702052116935372116936240Ratregion
5085080AW5331181962101608470101608666Ratregion
5085507BE1009161882115687237115687425Ratregion
5090667AU049889492117492453117492508Ratregion
5090667AU049889492117492453117492568Ratregion
5088213AU04843429927904642079046719Ratregion
5088525AU0486212102111600968111601178Ratregion
5080984RH14189618429145564791455831Ratregion
5085102AW5317752152136315443136315658Ratregion
5085196AW5326042112111577628111577839Ratregion
5088719AU0487378429535796495358048Ratregion
5088725AU0487401142125022419125022533Ratregion
5088745AU0487531762102661120102661296Ratregion
5085501BM39048619428473317684733370Ratregion
5089069AU0489361682101346887101347055Ratregion
5089181AU04900316125985060859850769Ratregion
5089261AU04905118125994321459943395Ratregion
5085778AW5277411542107507063107507217Ratregion
5084576AA9457161662118690858118691024Ratregion
5082763BF3900432432121919820121920063Ratregion
5086191AI1787641522118966360118966512Ratregion
5086224AI1018441862115108840115109026Ratregion
5084990AI00888620328700346387003666Ratregion
5083119BF3908061612120226051120226212Ratregion
5083347AA818143942110227073110227167Ratregion
5081595BF420674982123516248123516346Ratregion
5081635BE11772118527728315677283341Ratregion
5085189AW5340152162124594225124594440Ratregion
5085198AI0100811792124067294124067473Ratregion
5083457BF3913231332120211282120211415Ratregion
5086837AA8011081812110313078110313259Ratregion
5082003BF40902014427170279471702938Ratregion
5083815AA892399932101713223101713316Ratregion
5083913AI4066271462112322077112322223Ratregion
5502645RH1263012042120310928120311132Ratregion
5502671Dusp141932138739069138739262Ratregion
5502801MYO1013627629371776293853Ratregion
5502957Trpc47662138475745138476511Ratregion
5503794UniSTS:4711044122117537666117538078Ratregion
5503910UniSTS:2563856412102846237102846878Ratregion
5503550ZFH4__493877329622737996228152Ratregion
5504008px-1e51052121380222121380327Ratregion
5504298D8S1388E9029320471993204809Ratregion
5504552PMC304100P21222117537871117537993Ratregion
5504650PMC32249P15452135290763135291308Ratregion
5504809ha2145027888226678882787Ratregion
5504859ha253102136958572136959506Ratregion
5504873ha28479132131027273131028228Ratregion
5504480PMC22098P152226093092960931451Ratregion
5505128Krt1876327891062078911453Ratregion
5505128Krt1876327891069078911453Ratregion
5505899UniSTS:4960149128359670883596799Ratregion
5506029NM_1942839325941952659419619Ratregion
5506125UniSTS:4984218328678067786780760Ratregion
5506789G4539624027596796975968209Ratregion
5506825G462762712114611009114611280Ratregion
5507163UniSTS:2249502122124315280124315492Ratregion
5507197UniSTS:22524619629157084391571039Ratregion
5506941G3282014828742665987426807Ratregion
5506993fi13b11.x102109326614109327694Ratregion
5499499stSG6024345052122214219122214724Ratregion
5499783UniSTS:2346592212118763445118763666Ratregion
5499787UniSTS:2346791302138533942138534072Ratregion
5499775UniSTS:23463931029247549592475805Ratregion
5499497stSG60227711102139303554139304664Ratregion
5501109PMC138456P21182119432458119432576Ratregion
5501299CP-000F2122102457192102458466Ratregion
5501361D3S1232892117527557117527646Ratregion
5504752PMC86923P17522139237347139238099Ratregion
5505016Mirn124a-21042100134865100134969Ratregion
5501638UNH10876152125612043125612657Ratregion
5501836MARC_15315-15316:1013436374:14612135517549135518010Ratregion
5501918MARC_17479-17480:1016465460:11222112590043112591201Ratregion
5506060UniSTS:4982663142123791880123792194Ratregion
5506591KIAA11091112119912322119912433Ratregion
550223724.MMHAP12FLH3.seq1882118753830118754018Ratregion
5502705Tenr02119949582119950628Ratregion
5502776GYG11172102648215102648332Ratregion
5502849Bhlhb58712100487952100488823Ratregion
5502415RH124784027424650474246699Ratregion
152025239rs10678174902122609194122609194Ratregion
152025241rs107362207028081652480816524Ratregion
152025195rs10715768802137506990137506990Ratregion
Position Markers

Flank 1: (D2Mit24)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2259,324,377 - 59,324,691 (+)MAPPER
Rnor_6.0260,325,352 - 60,325,665NCBI
Rnor_5.0284,360,871 - 84,361,184UniSTS
RGSC_v3.4259,700,886 - 59,701,200RGD
RGSC_v3.4259,700,887 - 59,701,200UniSTS
RGSC_v3.1259,629,119 - 59,629,433RGD
Celera259,347,132 - 59,347,445UniSTS
RH 3.4 Map2408.7UniSTS
RH 3.4 Map2408.7RGD
Cytogenetic Map2q16UniSTS
Peak: (D2Mit17)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22106,741,551 - 106,741,741 (+)MAPPER
Rnor_6.02109,518,711 - 109,518,900NCBI
Rnor_5.02129,243,056 - 129,243,245UniSTS
RGSC_v3.42109,557,815 - 109,558,005RGD
RGSC_v3.42109,557,816 - 109,558,005UniSTS
RGSC_v3.12109,502,778 - 109,502,967RGD
Celera2102,024,881 - 102,025,070UniSTS
RH 3.4 Map2751.6UniSTS
RH 3.4 Map2751.6RGD
SHRSP x BN Map237.6698UniSTS
SHRSP x BN Map237.6698RGD
Cytogenetic Map2q24UniSTS
Flank 2: (D2Mit23)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22141,596,551 - 141,596,857 (+)MAPPER
Rnor_6.02147,522,550 - 147,522,851NCBI
Rnor_5.02166,931,667 - 166,931,968UniSTS
RGSC_v3.42146,659,370 - 146,659,672RGD
RGSC_v3.42146,659,371 - 146,659,672UniSTS
RGSC_v3.12146,609,297 - 146,609,712RGD
Cytogenetic Map2 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2127447387143657569Rat
12879830Bw178Body weight QTL 1780.001body mass (VT:0001259)body weight (CMO:0000012)2137219876142323610Rat
12879831Cm82Cardiac mass QTL 820.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2137219876142323610Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)276539322102785628Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
12879832Cm83Cardiac mass QTL 830.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2137219876142323610Rat
12879833Cm84Cardiac mass QTL 840.001heart right ventricle mass (VT:0007033)heart weight to body weight ratio (CMO:0000074)2137219876142323610Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
12879834Am1Aortic mass QTL 10.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2137219876142323610Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879835Kidm60Kidney mass QTL 600.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2137219876142323610Rat
2317058Aia13Adjuvant induced arthritis QTL 132.9joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)27653932277991361Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1354594Despr10Despair related QTL 102e-06locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)228484589169504100Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)228484589169504100Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2122609194206936711Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)25653191259324719Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)238573329122609194Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25760561276539510Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22238462767384627Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2141596551202447032Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
7488931Bp367Blood pressure QTL 3670.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2139401804142323610Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia7


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia7  Collagen induced arthritis QTL 7    Type II Collagen induced arthritis QTL 7  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_disease homologous region on human chromosome 5p12-p14 is linked to multiple sclerosis in humans 61063
qtl_gene peak is located 1.8 cM telomeric from carboxypeptidase B (Cpb1) 61063
qtl_gene whole genome analysis using PGMapper revealed Tnfsf10, Il6st, Crh, C6, C7, Il2, Ank, Il7, Il21, Tenr and Prlr as RA associated genes and Crh, Il2, Il21, Tenr as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 522 known and 251 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general in analysis of BB/DR x BN cross, disease-enhancing alleles were contributed by the BN parent 61067