Bw178 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Bw178 (Body weight QTL 178) Rattus norvegicus

Symbol: Bw178
Name: Body weight QTL 178
RGD ID: 12879830
Previously known as: BpcakmC2QTL1
Trait: body mass   (VT:0001259)    
Measurement Type: body weight   (CMO:0000012)    
LOD Score: Not Available
P Value: 0.001
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22137,219,876 - 142,323,610RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.02142,355,464 - 148,295,508RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02162,041,036 - 167,706,680RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42142,068,645 - 147,424,436RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: SS.MNS-(D2Rat183-D2Chm113)/Ayd 




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw178Rathypertension  IAGP 1599557 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw178Ratabnormal body weight  IAGP 1599557 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw178Ratbody weight  IDA 1599557 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw178Ratcontrolled sodium content diet  IDA 1599557 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw178Ratscale  IDA 1599557 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw178RatSS.MNS-(D2Rat183-D2Chm113)/Ayd  IEA 1599557 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bw178Ratbody mass  IDA 1599557 RGD 


#
Reference Title
Reference Citation
1. Distinct quantitative trait loci for kidney, cardiac, and aortic mass dissociated from and associated with blood pressure in Dahl congenic rats. Duong C, etal., Mamm Genome. 2006 Dec;17(12):1147-61. Epub 2006 Dec 1.


1 to 20 of 60 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1560177Lhfpl6LHFPL tetraspan subfamily member 62137126485137324442Rat
41343568LOC120100819uncharacterized LOC1201008192137269261137286537Rat
11386619LOC10835018760S ribosomal protein L39 pseudogene2137421238137421432Rat
1565414Nhlrc3NHL repeat containing 32137527843137542258Rat
7631535Nhp2-ps1NHP2 ribonucleoprotein, pseudogene 12137531853137534519Rat
1309403Proser1proline and serine rich 12137542378137561767Rat
1311090Stoml3stomatin like 32137572691137582402Rat
40999832LOC120101356small nucleolar RNA SNORA172137598603137598719Rat
1566012Frem2FRAS1 related extracellular matrix 22137602784137740785Rat
2318910C1h15orf40-ps1similar to human chromosome 15 open reading frame 40, pseudogene 12137775820137776319Rat
1588592Prdx1-ps8peroxiredoxin 1, pseudogene 82137826256137826912Rat
1304890Ufm1ubiquitin-fold modifier 12137969476137977620Rat
7623948LOC102549721uncharacterized LOC1025497212138182296138232451Rat
621276Trpc4transient receptor potential cation channel, subfamily C, member 42138307676138476856Rat
1305285Postnperiostin2138527714138559098Rat
1590821Dusp14l1dual specificity phosphatase 14-like 12138738130138739473Rat
1564472Rexo1l1-ps1REX1, RNA exonuclease 1 homolog-like 1, pseudogene 12138834049138838838Rat
40952217Trnaa-agc74transfer RNA alanine (anticodon AGC) 742138840829138840903Rat
40964986Trnaa-ggctransfer RNA alanine (anticodon GGC)2138866655138866735Rat
1307812Supt20hSPT20 homolog, SAGA complex component2138897316138930493Rat

1 to 20 of 60 rows
1 to 20 of 102 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
5068978AU0468052982137219799137220097Ratregion
1358030D2Chm332092137219876137220085Ratregion
7193097BI2810071812137324111137324292Ratregion
5034606BI2810071592137324112137324271Ratregion
5064048AA9561421812137324242137324423Ratregion
43540D2Got971602137331233137331393Ratregion
152025195rs10715768802137506990137506990Ratregion
43541D2Got1042222137514111137514333Ratregion
5062358BF4031892182137526406137526624Ratregion
5073220RH1373101812137528001137528182Ratregion
5050004RH1338072102137560625137560835Ratregion
5078334RH1402801832137561485137561668Ratregion
5057672BF3925482282137563132137563346Ratregion
5064046BE1205351922137590456137590648Ratregion
5073662RH1375671962137600706137600902Ratregion
5080342RH1415242152137602299137602514Ratregion
5063238BF4105802232137745645137745868Ratregion
42598D2Rat3872412137784120137784356Ratregion
5058702BE1023371712137970027137970198Ratregion
5026728RH1333092022137970683137970885Ratregion
1 to 20 of 102 rows

Flank 1: (D2Chm33)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22137,219,876 - 137,220,085 (+)MAPPER
Rnor_6.02142,355,464 - 142,355,672NCBI
Rnor_5.02162,041,036 - 162,041,244UniSTS
RGSC_v3.42142,068,645 - 142,068,853UniSTS
Celera2131,717,182 - 131,717,390UniSTS
Cytogenetic Map2q26UniSTS
Flank 2: (D2Chm90)
Rat AssemblyChrPosition (strand)Source
mRatBN7.22142,323,368 - 142,323,610 (+)MAPPER
Rnor_6.02148,295,267 - 148,295,508NCBI
Rnor_5.02167,706,439 - 167,706,680UniSTS
RGSC_v3.42147,424,195 - 147,424,436UniSTS
Celera2136,755,765 - 136,756,448UniSTS
Celera2136,755,765 - 136,755,986UniSTS
Cytogenetic Map2 RGD


1 to 10 of 78 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat

1 to 10 of 78 rows


Note Type Note Reference
qtl_general number of animals used: 8 gender: male 1599557
qtl_general also affects kidney mass, blood pressure, heart left and right ventricle mass, aortic mass and cardiac mass 1599557
qtl_statistics_details software package used: ANOVA followed by Dunnett test in the SYSTAT 9 program 1599557
qtl_trait_method measurement method: selected males were weaned at 21 days of age then fed a 2% NaCl diet starting from 35 days of age, at 14 weeks animals were weighed 1599557