Supt20h (SPT20 homolog, SAGA complex component) - Rat Genome Database

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Gene: Supt20h (SPT20 homolog, SAGA complex component) Rattus norvegicus
Analyze
Symbol: Supt20h
Name: SPT20 homolog, SAGA complex component
RGD ID: 1307812
Description: Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of gluconeogenesis and positive regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 4,4'-sulfonyldiphenol; bisphenol A; bisphenol F.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Fam48a; family with sequence similarity 48, member A; LOC361946; RGD1307812; similar to transcription factor (p38 interacting protein); suppressor of Ty 20; Supt20; transcription factor (p38 interacting protein); transcription factor SPT20 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82141,047,479 - 141,080,656 (+)NCBIGRCr8
mRatBN7.22138,897,316 - 138,930,493 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2138,897,416 - 138,930,495 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2145,471,532 - 145,504,744 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02143,583,554 - 143,616,770 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02138,215,391 - 138,248,605 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02143,892,609 - 143,925,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2143,892,567 - 143,925,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02160,337,768 - 160,370,787 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,921,831 - 143,955,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12143,871,793 - 143,904,995 (+)NCBI
Celera2133,382,206 - 133,415,296 (+)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Comprehensive gene review and curation RGD comprehensive gene curation
4. ATAC-king the complexity of SAGA during evolution. Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:18838386   PMID:24051374  


Genomics

Comparative Map Data
Supt20h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82141,047,479 - 141,080,656 (+)NCBIGRCr8
mRatBN7.22138,897,316 - 138,930,493 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2138,897,416 - 138,930,495 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2145,471,532 - 145,504,744 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02143,583,554 - 143,616,770 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02138,215,391 - 138,248,605 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02143,892,609 - 143,925,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2143,892,567 - 143,925,633 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02160,337,768 - 160,370,787 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42143,921,831 - 143,955,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12143,871,793 - 143,904,995 (+)NCBI
Celera2133,382,206 - 133,415,296 (+)NCBICelera
Cytogenetic Map2q26NCBI
SUPT20H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381337,009,312 - 37,059,688 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1337,009,312 - 37,059,713 (-)EnsemblGRCh38hg38GRCh38
GRCh371337,583,449 - 37,633,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361336,481,449 - 36,531,850 (-)NCBINCBI36Build 36hg18NCBI36
Build 341336,481,630 - 36,531,787NCBI
Celera1318,650,692 - 18,701,096 (-)NCBICelera
Cytogenetic Map13q13.3NCBI
HuRef1318,394,967 - 18,445,535 (-)NCBIHuRef
CHM1_11337,550,999 - 37,601,397 (-)NCBICHM1_1
T2T-CHM13v2.01336,228,509 - 36,278,887 (-)NCBIT2T-CHM13v2.0
Supt20
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39354,600,181 - 54,636,184 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl354,600,228 - 54,636,187 (+)EnsemblGRCm39 Ensembl
GRCm38354,692,760 - 54,728,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl354,692,807 - 54,728,766 (+)EnsemblGRCm38mm10GRCm38
MGSCv37354,497,027 - 54,520,759 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36354,781,034 - 54,804,766 (+)NCBIMGSCv36mm8
Celera354,414,785 - 54,438,517 (+)NCBICelera
Cytogenetic Map3CNCBI
cM Map325.59NCBI
Supt20h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554319,014,726 - 9,050,844 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554319,013,325 - 9,050,844 (+)NCBIChiLan1.0ChiLan1.0
SUPT20H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21436,529,677 - 36,581,604 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11327,635,860 - 27,687,764 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01318,217,142 - 18,268,937 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11336,647,184 - 36,698,654 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1336,647,544 - 36,687,513 (-)Ensemblpanpan1.1panPan2
SUPT20H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1253,658,528 - 3,698,487 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl253,658,795 - 3,701,763 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha253,688,667 - 3,728,598 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0253,756,852 - 3,796,789 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl253,756,805 - 3,800,065 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,659,884 - 3,699,722 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0253,650,940 - 3,690,848 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0253,722,917 - 3,762,860 (+)NCBIUU_Cfam_GSD_1.0
Supt20h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945164,818,279 - 164,832,479 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647231,119,671 - 31,129,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUPT20H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,825,762 - 12,864,929 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,825,758 - 12,864,935 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21112,814,393 - 12,827,510 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUPT20H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1315,529,023 - 15,578,330 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl315,529,378 - 15,578,293 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605728,706,306 - 28,755,612 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Supt20h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624776185,095 - 223,325 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624776185,196 - 223,316 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Supt20h
107 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2136445150202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2118111229149559726Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2118189491163189491Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2112456140212696837Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2129540907174540907Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2104559726149559726Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2133914684202447032Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2114654253159654253Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2114837675212549332Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527185876470Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527185876470Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2114837527143657569Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2114837527143657569Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2118111229157142209Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2136916935189599348Rat
1581552Pur12Proteinuria QTL 125.190.0009urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2112103657148076632Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2127447387143657569Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2114837527211674221Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2112456140212696837Rat
12879833Cm84Cardiac mass QTL 840.001heart right ventricle mass (VT:0007033)heart weight to body weight ratio (CMO:0000074)2137219876142323610Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2135552573202446871Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2135552573202446871Rat
12879831Cm82Cardiac mass QTL 820.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2137219876142323610Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
12879832Cm83Cardiac mass QTL 830.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2137219876142323610Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
12879835Kidm60Kidney mass QTL 600.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2137219876142323610Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2136916935213594495Rat
12879830Bw178Body weight QTL 1780.001body mass (VT:0001259)body weight (CMO:0000012)2137219876142323610Rat
12879834Am1Aortic mass QTL 10.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2137219876142323610Rat

Markers in Region
AI450544  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22138,918,413 - 138,918,534 (+)MAPPERmRatBN7.2
Rnor_6.02143,913,652 - 143,913,772NCBIRnor6.0
Rnor_5.02160,349,729 - 160,349,849UniSTSRnor5.0
RGSC_v3.42143,942,951 - 143,943,071UniSTSRGSC3.4
Celera2133,403,215 - 133,403,335UniSTS
Cytogenetic Map2q26UniSTS
RH129336  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22138,930,450 - 138,930,948 (+)MAPPERmRatBN7.2
mRatBN7.2562,498,224 - 62,498,442 (+)MAPPERmRatBN7.2
Rnor_6.0563,918,395 - 63,918,612NCBIRnor6.0
Rnor_6.02143,925,689 - 143,926,186NCBIRnor6.0
Rnor_5.0568,435,750 - 68,435,967UniSTSRnor5.0
Rnor_5.02160,337,315 - 160,337,812UniSTSRnor5.0
RGSC_v3.42143,954,988 - 143,955,485UniSTSRGSC3.4
RGSC_v3.4564,850,065 - 64,850,282UniSTSRGSC3.4
Celera565,096,714 - 65,096,931UniSTS
Celera2133,415,252 - 133,415,749UniSTS
RH 3.4 Map2860.6UniSTS
Cytogenetic Map2q26UniSTS
Cytogenetic Map5q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 10 74 35 41 11 8
Low 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_172645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008760999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC081923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000080026   ⟹   ENSRNOP00000070797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2138,897,708 - 138,930,253 (+)Ensembl
Rnor_6.0 Ensembl2143,895,982 - 143,913,935 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000080443   ⟹   ENSRNOP00000075507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2138,897,533 - 138,930,453 (+)Ensembl
Rnor_6.0 Ensembl2143,892,567 - 143,925,633 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099639   ⟹   ENSRNOP00000078999
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2138,901,155 - 138,930,495 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101018   ⟹   ENSRNOP00000081981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2138,897,416 - 138,930,495 (+)Ensembl
RefSeq Acc Id: NM_001395599   ⟹   NP_001382528
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,563 - 141,080,656 (+)NCBI
mRatBN7.22138,897,399 - 138,930,493 (+)NCBI
RefSeq Acc Id: NR_172645
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,563 - 141,080,656 (+)NCBI
mRatBN7.22138,897,399 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_006232338   ⟹   XP_006232400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,482 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
Rnor_6.02143,892,609 - 143,925,731 (+)NCBI
Rnor_5.02160,337,768 - 160,370,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232342   ⟹   XP_006232404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,569 - 141,080,656 (+)NCBI
mRatBN7.22138,897,496 - 138,930,493 (+)NCBI
Rnor_6.02143,892,727 - 143,925,731 (+)NCBI
Rnor_5.02160,337,768 - 160,370,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232344   ⟹   XP_006232406
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,584 - 141,080,656 (+)NCBI
mRatBN7.22138,897,499 - 138,930,493 (+)NCBI
Rnor_6.02143,892,727 - 143,925,731 (+)NCBI
Rnor_5.02160,337,768 - 160,370,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232345   ⟹   XP_006232407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,493 (+)NCBI
Rnor_6.02143,892,609 - 143,925,731 (+)NCBI
Rnor_5.02160,337,768 - 160,370,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232346   ⟹   XP_006232408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,611 - 141,080,656 (+)NCBI
mRatBN7.22138,897,497 - 138,930,493 (+)NCBI
Rnor_6.02143,892,727 - 143,925,731 (+)NCBI
Rnor_5.02160,337,768 - 160,370,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008760996   ⟹   XP_008759218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,479 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,493 (+)NCBI
Rnor_6.02143,892,728 - 143,925,731 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008760998   ⟹   XP_008759220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,493 (+)NCBI
Rnor_6.02143,892,728 - 143,925,731 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761000   ⟹   XP_008759222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,493 (+)NCBI
Rnor_6.02143,892,728 - 143,925,731 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008761001   ⟹   XP_008759223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,493 (+)NCBI
Rnor_6.02143,892,728 - 143,925,731 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039102602   ⟹   XP_038958530
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,818 - 141,080,656 (+)NCBI
mRatBN7.22138,897,496 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102603   ⟹   XP_038958531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102604   ⟹   XP_038958532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,593 - 141,080,656 (+)NCBI
mRatBN7.22138,897,451 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102605   ⟹   XP_038958533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102606   ⟹   XP_038958534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102608   ⟹   XP_038958536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102609   ⟹   XP_038958537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,625 - 141,080,656 (+)NCBI
mRatBN7.22138,897,498 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102610   ⟹   XP_038958538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102611   ⟹   XP_038958539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102612   ⟹   XP_038958540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102613   ⟹   XP_038958541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,242 (+)NCBI
RefSeq Acc Id: XM_039102614   ⟹   XP_038958542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,317 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_039102615   ⟹   XP_038958543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
mRatBN7.22138,897,316 - 138,930,493 (+)NCBI
RefSeq Acc Id: XM_063282073   ⟹   XP_063138143
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,838 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282074   ⟹   XP_063138144
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,569 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282075   ⟹   XP_063138145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282076   ⟹   XP_063138146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,611 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282077   ⟹   XP_063138147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,569 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282078   ⟹   XP_063138148
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282079   ⟹   XP_063138149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,584 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282080   ⟹   XP_063138150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,579 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282081   ⟹   XP_063138151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,575 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282082   ⟹   XP_063138152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282083   ⟹   XP_063138153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282084   ⟹   XP_063138154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282085   ⟹   XP_063138155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,569 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282086   ⟹   XP_063138156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282087   ⟹   XP_063138157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,584 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282088   ⟹   XP_063138158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,583 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282089   ⟹   XP_063138159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282090   ⟹   XP_063138160
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,593 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282091   ⟹   XP_063138161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282092   ⟹   XP_063138162
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282093   ⟹   XP_063138163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282094   ⟹   XP_063138164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,080,656 (+)NCBI
RefSeq Acc Id: XM_063282095   ⟹   XP_063138165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,491 - 141,069,108 (+)NCBI
RefSeq Acc Id: XM_063282096   ⟹   XP_063138166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,569 - 141,069,108 (+)NCBI
RefSeq Acc Id: XM_063282097   ⟹   XP_063138167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,583 - 141,069,108 (+)NCBI
RefSeq Acc Id: XM_063282098   ⟹   XP_063138168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82141,047,564 - 141,069,108 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001382528 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232400 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232404 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232406 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232407 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232408 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759218 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759220 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759222 (Get FASTA)   NCBI Sequence Viewer  
  XP_008759223 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958530 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958531 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958532 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958533 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958534 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958536 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958537 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958538 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958539 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958540 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958541 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958542 (Get FASTA)   NCBI Sequence Viewer  
  XP_038958543 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138143 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138144 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138145 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138146 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138147 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138148 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138149 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138150 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138151 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138152 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138153 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138154 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138155 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138156 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138157 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138158 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138159 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138160 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138161 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138162 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138163 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138164 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138165 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138166 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138167 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138168 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH81923 (Get FASTA)   NCBI Sequence Viewer  
  EDM14925 (Get FASTA)   NCBI Sequence Viewer  
  EDM14926 (Get FASTA)   NCBI Sequence Viewer  
  EDM14927 (Get FASTA)   NCBI Sequence Viewer  
  EDM14928 (Get FASTA)   NCBI Sequence Viewer  
  EDM14929 (Get FASTA)   NCBI Sequence Viewer  
  EDM14930 (Get FASTA)   NCBI Sequence Viewer  
  EDM14931 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070797
  ENSRNOP00000070797.2
  ENSRNOP00000075507
  ENSRNOP00000075507.2
  ENSRNOP00000078999.1
  ENSRNOP00000081981
  ENSRNOP00000081981.1
GenBank Protein Q66HC7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_006232407   ⟸   XM_006232345
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232400   ⟸   XM_006232338
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232408   ⟸   XM_006232346
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232404   ⟸   XM_006232342
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232406   ⟸   XM_006232344
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759218   ⟸   XM_008760996
- Peptide Label: isoform X10
- UniProtKB: A0A0G2KAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759220   ⟸   XM_008760998
- Peptide Label: isoform X20
- UniProtKB: A0A0G2KAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759222   ⟸   XM_008761000
- Peptide Label: isoform X11
- UniProtKB: A0A0G2KAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008759223   ⟸   XM_008761001
- Peptide Label: isoform X21
- UniProtKB: A0A0G2KAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075507   ⟸   ENSRNOT00000080443
RefSeq Acc Id: ENSRNOP00000070797   ⟸   ENSRNOT00000080026
RefSeq Acc Id: XP_038958531   ⟸   XM_039102603
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958536   ⟸   XM_039102608
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958533   ⟸   XM_039102605
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958540   ⟸   XM_039102612
- Peptide Label: isoform X8
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958543   ⟸   XM_039102615
- Peptide Label: isoform X9
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958534   ⟸   XM_039102606
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958538   ⟸   XM_039102610
- Peptide Label: isoform X5
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958539   ⟸   XM_039102611
- Peptide Label: isoform X6
- UniProtKB: A0A8I6G6T8 (UniProtKB/TrEMBL),   A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958542   ⟸   XM_039102614
- Peptide Label: isoform X16
- UniProtKB: A0A0G2KAS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958541   ⟸   XM_039102613
- Peptide Label: isoform X14
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958532   ⟸   XM_039102604
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958530   ⟸   XM_039102602
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958537   ⟸   XM_039102609
- Peptide Label: isoform X4
- UniProtKB: A0A0G2JYU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078999   ⟸   ENSRNOT00000099639
RefSeq Acc Id: ENSRNOP00000081981   ⟸   ENSRNOT00000101018
RefSeq Acc Id: NP_001382528   ⟸   NM_001395599
- UniProtKB: A0A0G2KAS5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138148   ⟸   XM_063282078
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063138156   ⟸   XM_063282086
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063138159   ⟸   XM_063282089
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063138152   ⟸   XM_063282082
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063138161   ⟸   XM_063282091
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063138163   ⟸   XM_063282093
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063138145   ⟸   XM_063282075
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063138154   ⟸   XM_063282084
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063138153   ⟸   XM_063282083
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063138162   ⟸   XM_063282092
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063138164   ⟸   XM_063282094
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063138165   ⟸   XM_063282095
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063138168   ⟸   XM_063282098
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063138144   ⟸   XM_063282074
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063138147   ⟸   XM_063282077
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063138155   ⟸   XM_063282085
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063138166   ⟸   XM_063282096
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063138151   ⟸   XM_063282081
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063138150   ⟸   XM_063282080
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063138158   ⟸   XM_063282088
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063138167   ⟸   XM_063282097
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063138149   ⟸   XM_063282079
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063138157   ⟸   XM_063282087
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063138160   ⟸   XM_063282090
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063138146   ⟸   XM_063282076
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063138143   ⟸   XM_063282073
- Peptide Label: isoform X1
Protein Domains
Spt20-like SEP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HC7-F1-model_v2 AlphaFold Q66HC7 1-530 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691327
Promoter ID:EPDNEW_R1852
Type:initiation region
Name:Supt20h_1
Description:SPT20 homolog, SAGA complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02143,892,688 - 143,892,748EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307812 AgrOrtholog
BioCyc Gene G2FUF-53077 BioCyc
Ensembl Genes ENSRNOG00000059480 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080026.2 UniProtKB/TrEMBL
  ENSRNOT00000080443.2 UniProtKB/TrEMBL
  ENSRNOT00000099639 ENTREZGENE
  ENSRNOT00000099639.1 UniProtKB/TrEMBL
  ENSRNOT00000101018.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112766 IMAGE-MGC_LOAD
InterPro Spt20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spt20-like_SEP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361946 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93903 IMAGE-MGC_LOAD
NCBI Gene 361946 ENTREZGENE
PANTHER PTHR13526 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR SPT20 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Spt20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Supt20h PhenoGen
RatGTEx ENSRNOG00000059480 RatGTEx
UniProt A0A0G2JYU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KAS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMJ0_RAT UniProtKB/TrEMBL
  A0A8I6G6T8 ENTREZGENE, UniProtKB/TrEMBL
  Q66HC7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-14 Supt20h  SPT20 homolog, SAGA complex component  Supt20  suppressor of Ty 20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-02 Supt20  suppressor of Ty 20  Fam48a  family with sequence similarity 48, member A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Fam48a  family with sequence similarity 48, member A  RGD1307812  similar to transcription factor (p38 interacting protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307812  similar to transcription factor (p38 interacting protein)  RGD1307812_predicted  similar to transcription factor (p38 interacting protein) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307812_predicted  similar to transcription factor (p38 interacting protein) (predicted)  LOC361946_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361946_predicted  similar to transcription factor (p38 interacting protein) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL