Nbea (neurobeachin) - Rat Genome Database
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Gene: Nbea (neurobeachin) Rattus norvegicus
Analyze
Symbol: Nbea
Name: neurobeachin
RGD ID: 1562629
Description: Predicted to have protein kinase binding activity. Predicted to be involved in hematopoietic stem cell homeostasis and protein localization. Predicted to localize to several cellular components, including cytosol; nucleus; and trans-Golgi network. Orthologous to human NBEA (neurobeachin); INTERACTS WITH bisphenol A; PCB138; poly(I:C).
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC361948; LOW QUALITY PROTEIN: neurobeachin; RGD1562629; similar to neurobeachin
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
Rnor_6.02145,011,648 - 145,513,439 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02164,423,679 - 164,925,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,839,771 - 145,404,337 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2134,259,760 - 134,817,258 (-)NCBICelera
Cytogenetic Map2q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:11102458   PMID:21821005   PMID:26999814  


Genomics

Comparative Map Data
Nbea
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
Rnor_6.02145,011,648 - 145,513,439 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02164,423,679 - 164,925,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42144,839,771 - 145,404,337 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2134,259,760 - 134,817,258 (-)NCBICelera
Cytogenetic Map2q26NCBI
NBEA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1334,942,270 - 35,673,022 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1334,942,287 - 35,673,022 (+)EnsemblGRCh38hg38GRCh38
GRCh381334,942,270 - 35,672,736 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371335,516,407 - 36,246,873 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361334,414,456 - 35,144,873 (+)NCBINCBI36hg18NCBI36
Build 341334,414,455 - 35,144,872NCBI
Celera1316,583,420 - 17,313,776 (+)NCBI
Cytogenetic Map13q13.3NCBI
HuRef1316,329,086 - 17,059,750 (+)NCBIHuRef
CHM1_11335,484,950 - 36,214,489 (+)NCBICHM1_1
Nbea
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39355,532,616 - 56,091,169 (-)NCBIGRCm39mm39
GRCm39 Ensembl355,532,616 - 56,091,122 (-)Ensembl
GRCm38355,625,195 - 56,183,748 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl355,625,195 - 56,183,701 (-)EnsemblGRCm38mm10GRCm38
MGSCv37355,429,120 - 55,987,623 (-)NCBIGRCm37mm9NCBIm37
Celera355,330,749 - 55,888,966 (-)NCBICelera
Cytogenetic Map3CNCBI
cM Map326.61NCBI
Nbea
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543110,378,993 - 11,018,618 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543110,379,061 - 11,017,884 (-)NCBIChiLan1.0ChiLan1.0
NBEA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11334,615,370 - 35,322,521 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1334,614,820 - 35,322,521 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01316,182,613 - 16,891,082 (+)NCBIMhudiblu_PPA_v0panPan3
NBEA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1254,856,748 - 5,537,040 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl254,858,115 - 5,537,025 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,893,838 - 5,567,788 (-)NCBI
ROS_Cfam_1.0254,960,388 - 5,641,588 (-)NCBI
UMICH_Zoey_3.1254,866,933 - 5,420,020 (-)NCBI
UNSW_CanFamBas_1.0254,862,602 - 5,537,355 (-)NCBI
UU_Cfam_GSD_1.0254,926,906 - 5,600,915 (-)NCBI
Nbea
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_ltri_2NW_024404945166,072,458 - 166,681,142 (-)NCBI
SpeTri2.0NW_00493647229,271,036 - 29,879,698 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NBEA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1111,084,534 - 11,722,852 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11111,085,081 - 11,722,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21111,141,202 - 11,659,359 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NBEA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1313,557,184 - 14,276,240 (+)NCBI
Nbea
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247761,784,253 - 2,502,324 (-)NCBI

Position Markers
D2Rat222  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,514,574 - 145,514,793NCBIRnor6.0
Rnor_5.02164,926,827 - 164,927,046UniSTSRnor5.0
RGSC_v3.42145,318,604 - 145,318,823UniSTSRGSC3.4
RGSC_v3.42145,318,603 - 145,318,823RGDRGSC3.4
RGSC_v3.12145,268,566 - 145,268,786RGD
Celera2134,732,947 - 134,733,162UniSTS
RH 3.4 Map2863.0RGD
RH 3.4 Map2863.0UniSTS
RH 2.0 Map2728.0RGD
SHRSP x BN Map258.2598RGD
Cytogenetic Map2q26UniSTS
D2Rat373  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,431,818 - 145,431,936NCBIRnor6.0
Rnor_5.02164,844,071 - 164,844,189UniSTSRnor5.0
RGSC_v3.42145,236,092 - 145,236,211RGDRGSC3.4
RGSC_v3.42145,236,093 - 145,236,211UniSTSRGSC3.4
RGSC_v3.12145,185,892 - 145,186,204RGD
Celera2134,650,346 - 134,650,464UniSTS
FHH x ACI Map263.3399UniSTS
FHH x ACI Map263.3399RGD
Cytogenetic Map2q26UniSTS
T03409  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,011,680 - 145,011,874NCBIRnor6.0
Rnor_5.02164,423,711 - 164,423,905UniSTSRnor5.0
RGSC_v3.42144,839,803 - 144,839,997UniSTSRGSC3.4
Celera2134,259,792 - 134,259,986UniSTS
Cytogenetic Map2q26UniSTS
BF394609  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,570,626 - 145,570,836NCBIRnor6.0
Rnor_6.02147,057,935 - 147,058,145NCBIRnor6.0
Rnor_5.02166,472,388 - 166,472,598UniSTSRnor5.0
Rnor_5.02164,984,387 - 164,984,597UniSTSRnor5.0
RGSC_v3.42145,377,692 - 145,377,902UniSTSRGSC3.4
Celera2134,789,625 - 134,789,835UniSTS
RH 3.4 Map2962.7UniSTS
Cytogenetic Map2q26UniSTS
BE104314  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,246,804 - 145,246,963NCBIRnor6.0
Rnor_5.02164,659,667 - 164,659,826UniSTSRnor5.0
RGSC_v3.42145,078,664 - 145,078,823UniSTSRGSC3.4
Celera2134,495,178 - 134,495,337UniSTS
RH 3.4 Map2863.0UniSTS
Cytogenetic Map2q26UniSTS
BE107802  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,292,961 - 145,293,113NCBIRnor6.0
Rnor_5.02164,703,991 - 164,704,143UniSTSRnor5.0
RGSC_v3.42145,115,039 - 145,115,191UniSTSRGSC3.4
Celera2134,529,866 - 134,530,018UniSTS
RH 3.4 Map2863.3UniSTS
Cytogenetic Map2q26UniSTS
BF405211  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,017,656 - 145,017,841NCBIRnor6.0
Rnor_5.02164,429,687 - 164,429,872UniSTSRnor5.0
RGSC_v3.42144,845,779 - 144,845,964UniSTSRGSC3.4
Celera2134,265,768 - 134,265,953UniSTS
RH 3.4 Map2861.5UniSTS
Cytogenetic Map2q26UniSTS
AW047968  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,176,878 - 145,176,957NCBIRnor6.0
Rnor_5.02164,589,787 - 164,589,866UniSTSRnor5.0
RGSC_v3.42145,008,133 - 145,008,212UniSTSRGSC3.4
Celera2134,424,991 - 134,425,070UniSTS
Cytogenetic Map2q26UniSTS
BF415673  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02145,569,922 - 145,570,080NCBIRnor6.0
Rnor_6.02147,057,231 - 147,057,389NCBIRnor6.0
Rnor_5.02166,471,684 - 166,471,842UniSTSRnor5.0
Rnor_5.02164,983,683 - 164,983,841UniSTSRnor5.0
RGSC_v3.42145,376,988 - 145,377,146UniSTSRGSC3.4
Celera2134,788,921 - 134,789,079UniSTS
RH 3.4 Map2863.4UniSTS
Cytogenetic Map2q26UniSTS
Nbea  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera2134,816,972 - 134,817,076UniSTS
Cytogenetic Map2q26UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916169852800Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242776916195645082Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)260325352147522851Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)2140566078217498545Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2140566078217498545Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278321410158159410Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246537589217498710Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243133606217498545Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243133606217498545Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256244671217498710Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141583337217498710Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828049217498710Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242776916217498710Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2108880910153880910Rat
1582257Gluco21Glucose level QTL 213.10.0035blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2121750419169852800Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2142053350204585731Rat
1581552Pur12Proteinuria QTL 125.190.0009total urine protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)2115721880154182196Rat
738007Anxrr7Anxiety related response QTL 74.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2123456539168456539Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2116075644228737869Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)223837491149614623Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)268866454149614466Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243141290154583160Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2116075644228737869Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2118446646227707979Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2138901276217498710Rat
1354594Despr10Despair related QTL 100.00000249locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)2119789823164789823Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243149788198704485Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)275687495221880419Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283819608239166203Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266828236243550655Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283819608243901375Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)280631950149614623Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2142053350228984665Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)293995316169852800Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2142355464148295508Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2118446793228582621Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)223837719169852670Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)268865414169852800Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491169852800Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491169852800Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)223837719169852670Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)223837491169852800Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)223837491218957222Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2118446646200453484Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2118446646200453484Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2118446646149614623Rat
1359035Bp276Blood pressure QTL 276arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2118446646149614623Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2133399373173020198Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278321410217498710Rat
5135226Leukc2Leukocyte quantity QTL 2eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)2121750419155965721Rat
9589093Slep10Serum leptin concentration QTL 103.840.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)2102356980147356980Rat
7488931Bp367Blood pressure QTL 3670.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2144631170148295508Rat
6907363Bp357Blood pressure QTL 3574.10.002arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143447078188447078Rat
8662836Vetf8Vascular elastic tissue fragility QTL 80.66thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2110965721155965721Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283754907237610852Rat
12879832Cm83Cardiac mass QTL 830.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2142355464148295508Rat
12879843Am3Aortic mass QTL 30.016aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)227161361148295267Rat
12879841Cm87Cardiac mass QTL 870.026heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)227161361148295267Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)216679272245624402Rat
12879835Kidm60Kidney mass QTL 600.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2142355464148295508Rat
12879831Cm82Cardiac mass QTL 820.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2142355464148295508Rat
12879830Bw178Body weight QTL 1780.001body mass (VT:0001259)body weight (CMO:0000012)2142355464148295508Rat
12879844Kidm62Kidney mass QTL 620.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227161361148295267Rat
12879834Am1Aortic mass QTL 10.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2142355464148295508Rat
12879833Cm84Cardiac mass QTL 840.001heart right ventricle mass (VT:0007033)heart weight to body weight ratio (CMO:0000074)2142355464148295508Rat
12879842Cm88Cardiac mass QTL 880.042heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)227161361148295267Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:62
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000020883, ENSRNOT00000020916, ENSRNOT00000074171
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003753593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005501478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003753593   ⟹   XP_003753641
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,817,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006224127   ⟹   XP_006224189
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,817,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006224128   ⟹   XP_006224190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,817,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006224129   ⟹   XP_006224191
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,817,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006224130   ⟹   XP_006224192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,817,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006224131   ⟹   XP_006224193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,817,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006224132   ⟹   XP_006224194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,817,258 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008761027   ⟹   XP_008759249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02145,011,648 - 145,513,439 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008775152   ⟹   XP_008773374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,687,803 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008775153   ⟹   XP_008773375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera2134,259,760 - 134,689,204 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039103974   ⟹   XP_038959902
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
RefSeq Acc Id: XM_039103975   ⟹   XP_038959903
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,573 (-)NCBI
RefSeq Acc Id: XM_039103976   ⟹   XP_038959904
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
RefSeq Acc Id: XM_039103977   ⟹   XP_038959905
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
RefSeq Acc Id: XM_039103978   ⟹   XP_038959906
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,573 (-)NCBI
RefSeq Acc Id: XM_039103979   ⟹   XP_038959907
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,573 (-)NCBI
RefSeq Acc Id: XM_039103980   ⟹   XP_038959908
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,210,305 (-)NCBI
RefSeq Acc Id: XM_039103981   ⟹   XP_038959909
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22140,077,723 - 140,338,639 (-)NCBI
RefSeq Acc Id: XM_039103982   ⟹   XP_038959910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
RefSeq Acc Id: XM_039103983   ⟹   XP_038959911
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22139,780,021 - 140,338,639 (-)NCBI
RefSeq Acc Id: XR_005501478
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22140,017,556 - 140,338,639 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003753641   ⟸   XM_003753593
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006224194   ⟸   XM_006224132
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006224190   ⟸   XM_006224128
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006224192   ⟸   XM_006224130
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006224193   ⟸   XM_006224131
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006224191   ⟸   XM_006224129
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006224189   ⟸   XM_006224127
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008773375   ⟸   XM_008775153
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_008773374   ⟸   XM_008775152
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008759249   ⟸   XM_008761027
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038959910   ⟸   XM_039103982
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038959911   ⟸   XM_039103983
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038959905   ⟸   XM_039103977
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038959904   ⟸   XM_039103976
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038959902   ⟸   XM_039103974
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959903   ⟸   XM_039103975
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038959907   ⟸   XM_039103979
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038959906   ⟸   XM_039103978
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038959908   ⟸   XM_039103980
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038959909   ⟸   XM_039103981
- Peptide Label: isoform X8


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562629 AgrOrtholog
NCBI Gene 361948 ENTREZGENE
PhenoGen Nbea PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-25 Nbea  neurobeachin  RGD1562629  similar to neurobeachin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562629  similar to neurobeachin   RGD1562629_predicted  similar to neurobeachin (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562629_predicted  similar to neurobeachin (predicted)  LOC361948  similar to neurobeachin  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC361948  similar to neurobeachin      Symbol and Name status set to provisional 70820 PROVISIONAL