Swd7 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Swd7 (Spike wave discharge measurement QTL 7) Rattus norvegicus

Symbol: Swd7
Name: Spike wave discharge measurement QTL 7
RGD ID: 9685068
Also known as: Agkr2; amygdala kindling rate 2
Trait: brain electrophysiology trait   (VT:0010557)    
Measurement Type: brain spike-and-wave discharge rate   (CMO:0001739)    
LOD Score: 3.2
P Value: 0.01
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.02147,582,596 - 153,667,782RGD_MAPPER_PIPELINERnor6.0
Rnor_5.02166,990,525 - 173,061,969RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.42146,719,424 - 152,898,749RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: LEXF10C/Stm 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
LEXF10C/Stm  (IEA)

References

References - curated
1. Hashimoto R, etal., Exp Anim. 2013;62(3):181-7.

Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Flank 1: (rs105301743)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02147,582,596 - 147,582,596RGD
Rnor_5.02166,990,525 - 166,990,525RGD
RGSC_v3.42146,719,424 - 146,719,424RGD
Celera2136,107,478 - 136,107,478RGD
Peak: (rs105660993)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02171,692,728 - 171,692,728RGD
Rnor_5.02191,029,390 - 191,029,390RGD
RGSC_v3.42164,943,709 - 164,943,709RGD
Celera2153,129,986 - 153,129,986RGD
Flank 2: (rs106578723)
Rat AssemblyChrPosition (strand)Source
Rnor_6.02153,667,782 - 153,667,782RGD
Rnor_5.02173,061,969 - 173,061,969RGD
RGSC_v3.42152,898,749 - 152,898,749RGD
Celera2141,884,151 - 141,884,151RGD


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 6 male rats 7794751
qtl_general software package used: WinQTL Cartographer Version 2.5 7794751
qtl_general measurement method: at 10 weeks of age, bipolar electrode was implanted into the basolateral amygdala; after 2 weeks 60 Hz monophasic pulse was induced, EEG was used to record the severity of seizures 7794751
qtl_general kindling rate was 3.9 for F344/Stm and 10.3 for LEXF10C/Stm 7794751