Kidm24 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Kidm24 (Kidney mass QTL 24) Rattus norvegicus

Symbol: Kidm24
Name: Kidney mass QTL 24
RGD ID: 1358894
Previously known as: Km24
Trait: kidney mass   (VT:0002707)    
Measurement Type: both kidneys wet weight to body weight ratio   (CMO:0000340)    
LOD Score: 4.03
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8227,148,328 - 159,440,891RGD_MAPPER_PIPELINE
mRatBN7.2225,413,423 - 157,142,209RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0223,837,491 - 169,852,800RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0243,009,380 - 189,197,988RGDRnor5.0
RGSC_v3.4224,474,447 - 163,154,358RGDRGSC3.4
RGSC_v3.1224,394,817 - 163,104,321RGD
Cross Type: Not Available
Strains Crossed: LEW HTG 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm24Rathypertension  IAGP 1303386 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm24Ratdecreased kidney weight  IAGP 1303386 RGD 
Kidm24Ratincreased kidney weight  IAGP 1303386 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm24Ratboth kidneys wet weight to body weight ratio  IDA 1303386 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm24Ratlosartan  IDA 1303386 RGD 
Kidm24RatNG-nitroarginine methyl ester  IDA 1303386 RGD 
Kidm24Ratpentolinium  IDA 1303386 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm24Ratpost excision weight measurement  IDA 1303386 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm24RatHTG  IEA 1303386 RGD 
Kidm24RatLEW  IEA 1303386 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Kidm24Ratkidney mass  IDA 1303386 RGD 


#
Reference Title
Reference Citation
1. Gender-specific genetic determinants of blood pressure and organ weight: pharmacogenetic approach. Ueno T, etal., Physiol Res 2003;52(6):689-700.


1 to 20 of 1173 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1309869Lhfpl2LHFPL tetraspan subfamily member 222528177125428128Rat
2322653Snurf-ps1SNRPN upstream open reading frame, pseudogene 122541723325417480Rat
1596440Snrpn-ps5small nuclear ribonucleoprotein polypeptide N, pseudogene 522541765525418541Rat
3625Scamp1secretory carrier membrane protein 122543395825516734Rat
1310256Ap3b1adaptor related protein complex 3 subunit beta 122560006925800937Rat
11374962LOC108349922uncharacterized LOC10834992222590716025922806Rat
1311538Tbcatubulin folding cofactor A22601171426065909Rat
727945Otporthopedia homeobox22610815826116359Rat
11423879LOC108350223uncharacterized LOC10835022322611811926123605Rat
1306363Wdr41WD repeat domain 4122622279726273849Rat
735041Pde8bphosphodiesterase 8B22627511726479725Rat
41346751LOC120101137U6 spliceosomal RNA22641538926415495Rat
41338505Sdhc-ps1succinate dehydrogenase complex subunit C, pseudogene 122654966026551984Rat
6488109LOC100912266uncharacterized LOC10091226622655406226563136Rat
1309665Zbed3zinc finger, BED-type containing 322658762026600177Rat
41122070Snora47small nucleolar RNA, H/ACA box 4722659426026594397Rat
1310888Aggf1angiogenic factor with G patch and FHA domains 122661933626646050Rat
41244732LOC120101365small nucleolar RNA SNORD7822668496026685025Rat
2403Crhbpcorticotropin releasing hormone binding protein22669240326704710Rat
1562902S100zS100 calcium binding protein Z22673779626753611Rat

1 to 20 of 1173 rows
1 to 20 of 1614 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10121D2Mco341982102854285102854485Ratregion
10122D2Mco352912102853080102853371Ratregion
10319D2Mco4121627381172573811941Ratregion
10387D2Mgh261382102771168102771306Ratregion
10602D2Wox1315424613067246130826Ratregion
10904D2Mco332442147752777147753017Ratregion
10924D2Mit318424328333143283515Ratregion
10925D2Wox1213224328330043283432Ratregion
10966D2Uwm3420022720502327205223Ratregion
11155D2Wox1418225932445459324636Ratregion
11156D2Mit2431425932437759324691Ratregion
33824D2Mit418826158212361582311Ratregion
33983D2Mit233022141596551141596857Ratregion
34005D2Mit81582143657411143657569Ratregion
34114D2Mgh151562141194931141195087Ratregion
34190D2Mgh1915428357507283575226Ratregion
34204D2Mgh72272150540301150540526Ratregion
34278D2Mgh1412024315456643154682Ratregion
34334D2Mgh2115025604303156043181Ratregion
34383D2Mgh51162103794961103795077Ratregion
1 to 20 of 1614 rows

Flank 1: (D2Rat182)
Rat AssemblyChrPosition (strand)Source
GRCr8227,148,328 - 27,148,557 (+)Marker Load Pipeline
mRatBN7.2225,413,423 - 25,413,652 (+)MAPPER
Rnor_6.0223,837,491 - 23,837,719NCBI
Rnor_5.0243,009,380 - 43,009,608UniSTS
RGSC_v3.4224,474,447 - 24,474,676RGD
RGSC_v3.4224,474,448 - 24,474,676UniSTS
RGSC_v3.1224,394,817 - 24,395,045RGD
Celera221,486,419 - 21,486,647UniSTS
RH 3.4 Map213.3RGD
RH 3.4 Map213.3UniSTS
RH 2.0 Map276.4RGD
SHRSP x BN Map26.9998RGD
FHH x ACI Map211.3699RGD
Cytogenetic Map2q12UniSTS
Peak: (D2Rat182)
Rat AssemblyChrPosition (strand)Source
GRCr8227,148,328 - 27,148,557 (+)Marker Load Pipeline
mRatBN7.2225,413,423 - 25,413,652 (+)MAPPER
Rnor_6.0223,837,491 - 23,837,719NCBI
Rnor_5.0243,009,380 - 43,009,608UniSTS
RGSC_v3.4224,474,447 - 24,474,676RGD
RGSC_v3.4224,474,448 - 24,474,676UniSTS
RGSC_v3.1224,394,817 - 24,395,045RGD
Celera221,486,419 - 21,486,647UniSTS
RH 3.4 Map213.3RGD
RH 3.4 Map213.3UniSTS
RH 2.0 Map276.4RGD
SHRSP x BN Map26.9998RGD
FHH x ACI Map211.3699RGD
Cytogenetic Map2q12UniSTS
Flank 2: (D2Rat40)
Rat AssemblyChrPosition (strand)Source
GRCr82159,440,760 - 159,440,891 (+)Marker Load Pipeline
mRatBN7.22157,142,078 - 157,142,209 (+)MAPPER
Rnor_6.02169,852,670 - 169,852,800NCBI
Rnor_5.02189,197,858 - 189,197,988UniSTS
RGSC_v3.42163,154,228 - 163,154,358UniSTS
RGSC_v3.42163,154,227 - 163,154,358RGD
RGSC_v3.12163,104,191 - 163,104,321RGD
Celera2151,402,589 - 151,402,703UniSTS
RH 3.4 Map21025.6RGD
RH 3.4 Map21025.6UniSTS
RH 2.0 Map2778.0RGD
SHRSP x BN Map266.0998RGD
FHH x ACI Map269.9399RGD


1 to 10 of 158 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat
1549841Bp256Blood pressure QTL 2560.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2137219876142323610Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2102803808147803808Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1358360Sradr2Stress Responsive Adrenal Weight QTL 210.24adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)2129164097152195315Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2127447387143657569Rat
12879830Bw178Body weight QTL 1780.001body mass (VT:0001259)body weight (CMO:0000012)2137219876142323610Rat
12879831Cm82Cardiac mass QTL 820.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2137219876142323610Rat

1 to 10 of 158 rows



Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Kidm24  Kidney mass QTL 24  Km24    Symbol updated 1299863 APPROVED

Note Type Note Reference
qtl_general QTL detected in F2 males 1303386
qtl_statistics_details QTL mapping was carried out with the Map Manager QT program and is consistent with results obtained through one way analysis of variance (ANOVA) testing 1303386