Bmd47 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Bmd47 (Bone mineral density QTL 47) Rattus norvegicus

Symbol: Bmd47
Name: Bone mineral density QTL 47
RGD ID: 2300168
Trait: femur mineral mass   (VT:0010011)    
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: 6.6
P Value: 1.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2220,662,448 - 65,662,448RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0220,641,371 - 65,641,371RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0239,687,057 - 84,687,057RGDRnor5.0
RGSC_v3.4220,374,107 - 65,374,107RGDRGSC3.4
Cross Type: intercross
Strains Crossed: COP/OlaHsd DA/OlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
COP/OlaHsd  (IEA)
DA/OlaHsd  (IEA)

References

References - curated
1. Koller DL, etal., J Bone Miner Res. 2008 Sep;23(9):1382-8.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68401Gzmkgranzyme K24484081144848829Rat
619718Sv2csynaptic vesicle glycoprotein 2c22723293327428479Rat
619752Acot12acyl-CoA thioesterase 1222298686723027538Rat
2586F2rcoagulation factor II (thrombin) receptor22686934326885856Rat
2322Cdh6cadherin 626207913962225228Rat
619958Pdzd2PDZ domain containing 226138461461770516Rat
3281Pde4dphosphodiesterase 4D24001493341529190Rat
2238C6complement C625384602753921279Rat
61957Isl1ISL LIM homeobox 124807941248090704Rat
70970Hmgcs13-hydroxy-3-methylglutaryl-CoA synthase 125164936851667100Rat
70974Kif2akinesin family member 2A23836799838431237Rat
2403Crhbpcorticotropin releasing hormone binding protein22669240326704710Rat
620058PolkDNA polymerase kappa22782222827882331Rat
3196Npr3natriuretic peptide receptor 326086548360933432Rat
2633Fstfollistatin24612326046130584Rat
3043Map1bmicrotubule-associated protein 1B23081726130910458Rat
619937Ccl28C-C motif chemokine ligand 2825160135451625999Rat
3387Prkaa1protein kinase AMP-activated catalytic subunit alpha 125424029854275978Rat
3407Prlrprolactin receptor25913414759324719Rat
2677Gdnfglial cell derived neurotrophic factor25689399256919935Rat
2687Ghrgrowth hormone receptor25254145252804960Rat
2923Itga1integrin subunit alpha 124664612546812237Rat
62046Thbs4thrombospondin 422398315824025289Rat
69413Rasgrf2RAS protein-specific guanine nucleotide-releasing factor 222311361323361537Rat
621007Dab2DAB adaptor protein 225551469255567476Rat
621226Golph3golgi phosphoprotein 326134803061376051Rat
621496Bhmtbetaine-homocysteine S-methyltransferase22485987124879449Rat
620688Hcn1hyperpolarization-activated cyclic nucleotide-gated potassium channel 124949577149899702Rat
621696Srek1splicing regulatory glutamic acid and lysine rich protein 123484955234885120Rat
621431LifrLIF receptor subunit alpha25622439356292988Rat
2412Hapln1hyaluronan and proteoglycan link protein 122063164020696388Rat
68345Hspb3heat shock protein family B (small) member 324529528545295999Rat
621571Serinc5serine incorporator 522384689923950346Rat
621281Naip6NLR family, apoptosis inhibitory protein 623150742331559098Rat
620760Plk2polo-like kinase 224196917641974945Rat
621832Plpp1phospholipid phosphatase 124443900244500430Rat
620450Spef2sperm flagellar 225851248958694718Rat
628640Gzmagranzyme A24474063844752471Rat
621632Itga2integrin subunit alpha 224652034546621487Rat
628725Homer1homer scaffold protein 122454277724645715Rat
2606Fgf10fibroblast growth factor 1025080189750875428Rat
727945Otporthopedia homeobox22610815826116359Rat
620923Rab3cRAB3C, member RAS oncogene family24162772041843541Rat
620453Dmgdhdimethylglycine dehydrogenase22491260024987533Rat
621582Sub1SUB1 regulator of transcription26100564661020486Rat
621587Trim23tripartite motif-containing 2323530240535335746Rat
621067Embembigin24907050949125042Rat
620966Map3k1mitogen-activated protein kinase kinase kinase 124334857243414706Rat
621729Dnajc21DnaJ heat shock protein family (Hsp40) member C2125941950559446743Rat
3156Ndufs6NADH:ubiquinone oxidoreductase subunit S622720171327202126Rat
621199Nup155nucleoporin 15525720131057252918Rat
621767Agxt2alanine-glyoxylate aminotransferase 225933625259377664Rat
727976Sgtbsmall glutamine rich tetratricopeptide repeat co-chaperone beta23523304535269527Rat
621124Cdk7cyclin-dependent kinase 723184054531865447Rat
2903Il6stinterleukin 6 cytokine family signal transducer24406597944106255Rat
2500Dhfrdihydrofolate reductase22358587623611199Rat
1305805Card6caspase recruitment domain family, member 625419434354206902Rat
621518Nlnneurolysin23513363435232927Rat
3048Amacralpha-methylacyl-CoA racemase25994615859958255Rat
628641Ptger4prostaglandin E receptor 425433056354347451Rat
620755Smn1survival of motor neuron 1, telomeric23149001831501065Rat
620319C9complement C925557309455621345Rat
61977Ckmt2creatine kinase, mitochondrial 222307992023110518Rat
620866F2rl1F2R like trypsin receptor 122677227426785226Rat
620871F2rl2coagulation factor II (thrombin) receptor-like 222697205426977098Rat
621039Rps23ribosomal protein S2322207933922080909Rat
1306809Nadk2NAD kinase 2, mitochondrial25811767458159815Rat
620318C7complement C725408811654165102Rat
620089Oclnoccludin23165721731707466Rat
621712Foxd1forkhead box D122970255829704978Rat
2272CartptCART prepropeptide23125509831257452Rat
735041Pde8bphosphodiesterase 8B22627511726479725Rat
1305010C1qtnf3C1q and TNF related 325991709959939519Rat
1307506Gpx8glutathione peroxidase 824467644844680042Rat
2803Hmgcr3-hydroxy-3-methylglutaryl-CoA reductase22799752328018983Rat
619940Vcanversican22076171820860637Rat
1306363Wdr41WD repeat domain 4122622279726273840Rat
1305799Depdc1bDEP domain containing 1B23989116339963779Rat
1306393NipblNIPBL, cohesin loading factor25739944357586770Rat
1306438Tent2terminal nucleotidyltransferase 222438013524432099Rat
71013Esm1endothelial cell-specific molecule 124487606744884805Rat
727861Taf9TATA-box binding protein associated factor 923179431631798324Rat
1306592EgflamEGF-like, fibronectin type III and laminin G domains25630194556476665Rat
1307323Adamts12ADAM metallopeptidase with thrombospondin type 1 motif, 1226003287360327629Rat
2845Htr1a5-hydroxytryptamine receptor 1A23669417436695442Rat
3660Selenopselenoprotein P25249812352508409Rat
1302983Osmroncostatin M receptor25590711955961373Rat
1307580Fbxo4F-box protein 425317479853187792Rat
1307450Zcchc9zinc finger CCHC-type containing 922303815623048249Rat
1307607Hexbhexosaminidase subunit beta22848399728504165Rat
1307061Arhgef28Rho guanine nucleotide exchange factor 2822926388629560595Rat
1308508Brix1biogenesis of ribosomes BRX125945060859461486Rat
1308512Bdp1B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB23145752331470119Rat
1306583Trappc13trafficking protein particle complex subunit 1323527049335302049Rat
1306690Slc45a2solute carrier family 45, member 225996359959996408Rat
1307735Ankrd55ankyrin repeat domain 5524388387743983820Rat
1309515Rad17RAD17 checkpoint clamp loader component23176426031794542Rat
1305984MtrexMtr4 exosome RNA helicase24450032644560624Rat
1303108Ankra2ankyrin repeat family A member 222961286729623748Rat
1305413Mroh2bmaestro heat-like repeat family member 2B25400387054063992Rat
2291Ccnb1cyclin B123191219031921163Rat
3698Slc1a3solute carrier family 1 member 325775549557830605Rat
1307224RictorRPTOR independent companion of MTOR, complex 225581187755903893Rat
3625Scamp1secretory carrier membrane protein 122543395825516734Rat
1310204Ppwd1peptidylprolyl isomerase domain and WD repeat containing 123533730135360661Rat
1308095Btf3basic transcription factor 322965976429666898Rat
1309315Mrps36mitochondrial ribosomal protein S3623187054931878335Rat
1309131Cert1ceramide transporter 122788254627987090Rat
1309776Il7rinterleukin 7 receptor25845239358477757Rat
3329Pik3r1phosphoinositide-3-kinase regulatory subunit 123287894232963611Rat
1310461Cenpkcentromere protein K23536013235421372Rat
1310367Snx18sorting nexin 1824523232545258345Rat
1311538Tbcatubulin folding cofactor A22601171426065909Rat
1311550Rxfp3relaxin family peptide receptor 326000325660004686Rat
1307626Droshadrosha ribonuclease III26186488661976688Rat
1309697Mrps30mitochondrial ribosomal protein S3025045625350463128Rat
1310992Utp15UTP15, small subunit processome component22959440529612819Rat
1311881Slc38a9solute carrier family 38, member 924429163744374897Rat
1311890Zfrzinc finger RNA binding protein26113761161200322Rat
2158Arsbarylsulfatase B22500221025162675Rat
1311570Ercc8ERCC excision repair 8, CSA ubiquitin ligase complex subunit23964739339686229Rat
1311752Dimt1DIM1 rRNA methyltransferase and ribosome maturation factor23834308638366760Rat
1560402RGD1560402similar to Phosphoglycerate kinase 124275460542755929Rat
1310888Aggf1angiogenic factor with G patch and FHA domains 122661933626646050Rat
1308372Tnpo1transportin 123020752930300162Rat
1305668Paip1poly(A) binding protein interacting protein 125152314251550241Rat
1306909Marveld2MARVEL domain containing 223174265231764150Rat
1310697Cwc27CWC27 spliceosome associated cyclophilin23576467435975908Rat
1308170Cd180CD180 molecule23385594033870046Rat
1305938RGD1305938similar to expressed sequence AW54987725318978753203981Rat
1305942Rai14retinoic acid induced 1425954628459682687Rat
1310560Elovl7ELOVL fatty acid elongase 723978922939858579Rat
1308793Ddx4DEAD-box helicase 424422794644282867Rat
1310081Cplane1ciliogenesis and planar polarity effector 125726919557369580Rat
1305492Gpbp1GC-rich promoter binding protein 124302350443091146Rat
1306227RGD1306227similar to 4833420G17Rik protein25155322351577090Rat
1309487Wdr70WD repeat domain 7025695134557191244Rat
1307638Zfp131zinc finger protein 13125172277451753662Rat
1307559Ranbp3lRAN binding protein 3-like25805788758113158Rat
1306496Rad1RAD1 checkpoint DNA exonuclease25946159759469707Rat
1306502RGD1306502similar to hypothetical protein FLJ1119326184871661864762Rat
1309854Gfm2GTP dependent ribosome recycling factor mitochondrial 222844945228488200Rat
1306931Slc30a5solute carrier family 30 member 523194574531975969Rat
1307678Adamts6ADAM metallopeptidase with thrombospondin type 1 motif, 623542148335633305Rat
1310308Ptcd2pentatricopeptide repeat domain 223071227630739968Rat
1306624Zswim6zinc finger, SWIM-type containing 623921113139378877Rat
1310256Ap3b1adaptor related protein complex 3 subunit beta 122560006925800937Rat
1308776Capslcalcyphosine-like25839499558425527Rat
1309869Lhfpl2LHFPL tetraspan subfamily member 222528177125428128Rat
1310279Mccc2methylcrotonyl-CoA carboxylase subunit 223130492731375978Rat
1308448Plcxd3phosphatidylinositol-specific phospholipase C, X domain containing 325356702253746384Rat
1309504Actbl2actin, beta-like 224285802042860767Rat
1305356Srek1ip1SREK1-interacting protein 123597604535999630Rat
1307902Mtmr12myotubularin related protein 1226122371461293266Rat
1309665Zbed3zinc finger, BED-type containing 322658762026600177Rat
1310139Mast4microtubule associated serine/threonine kinase family member 423389324134483600Rat
1310597Poc5POC5 centriolar protein22771974527748805Rat
1309360Rgs7bpregulator of G-protein signaling 7 binding protein23613394436231505Rat
1563891Gcnt4glucosaminyl (N-acetyl) transferase 422825331128329381Rat
1562302LOC499530hypothetical protein LOC49953024855717048566072Rat
1311241Mier3MIER family member 324328754643316422Rat
1560462RGD1560462similar to ribosomal protein L10a23719203637193479Rat
1560484RGD1560484similar to ribosomal protein L425498492954986241Rat
1564936Atp6ap1lATPase H+ transporting accessory protein 1 like22203754222079376Rat
1564928Ttc23ltetratricopeptide repeat domain 23-like25947666659538313Rat
1563920Lmbrd2LMBR1 domain containing 225818955858251565Rat
1565105Serf1small EDRK-rich factor 123147577731482030Rat
1566212RGD1566212similar to ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)22683636226836853Rat
1564606RGD1564606similar to 60S ribosomal protein L23a23845281438453384Rat
1562550Tmem267transmembrane protein 26725158021051588937Rat
1563954Msh3mutS homolog 322344432623585777Rat
1564672Shisal2bshisa like 2B23600262236019529Rat
1561129Tmem174transmembrane protein 17422999207029993601Rat
1561503Ccdc152coiled-coil domain containing 15225250798752532880Rat
1561520RGD1561520similar to Ab2-16225139226551393293Rat
1565217Ccnocyclin O24463064044633914Rat
1359591Pelopelota mRNA surveillance and ribosome rescue factor24679785346799621Rat
1560158Ndufaf2NADH:ubiquinone oxidoreductase complex assembly factor 223953568039647378Rat
1562952Erbinerbb2 interacting protein23492696235028440Rat
1564042Ttc33tetratricopeptide repeat domain 3325427990654326851Rat
1562968Ssbp2single-stranded DNA binding protein 222265048822933696Rat
1563421Fyb1FYN binding protein 125562158555781206Rat
1561161Cspg4bchondroitin sulfate proteoglycan 4B24493980745008284Rat
1561673Ccdc125coiled-coil domain containing 12523180912031835538Rat
1563766LOC499542LRRGT0017826072684860735185Rat
1359492Tmem171transmembrane protein 17123003527830045996Rat
1559914Naip5NLR family, apoptosis inhibitory protein 523155770631608722Rat
1303152Enc1ectodermal-neural cortex 122855067028562591Rat
1311133Ipo11importin 1123816968838342929Rat
1310499Gtf2h2general transcription factor IIH subunit 223162375231652697Rat
1561110Fam151bfamily with sequence similarity 151, member B22367431723710420Rat
1562395Spz1spermatogenic leucine zipper 122379674123798337Rat
1560001LOC499544LRRGT0015426097731561004442Rat
621335Nsa2NSA2 ribosome biogenesis factor22844314228449393Rat
1560076RGD1560076similar to 60S ribosomal protein L29 (P23)23972034939720914Rat
1359418Bhmt2betaine-homocysteine S-methyltransferase 222489552524912475Rat
1311829Mrps27mitochondrial ribosomal protein S2723074000730808577Rat
1359573Xrcc4X-ray repair cross complementing 422094846421197705Rat
1308116Nim1kNIM1 serine/threonine protein kinase25167076451714782Rat
1562456Skp2S-phase kinase associated protein 225816122658189293Rat
1584743LOC679799similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38)22760092327601921Rat
1587624Atg10autophagy related 1022210930422398313Rat
1585838LOC680951similar to ubiquitin-conjugating enzyme E2 variant 123124673231247635Rat
1583002Mtx3metaxin 322406633224079708Rat
1359477Mocs2molybdenum cofactor synthesis 224650457446516327Rat
1565852LOC499541LRRGT0004526066714160673354Rat
1584008Oxct13-oxoacid CoA transferase 125323637053384715Rat
1565396Fcho2FCH and mu domain containing endocytic adaptor 223007914330181639Rat
1586478Il31rainterleukin 31 receptor A24411874844189943Rat
1587383LOC294776similar to ets variant gene 525487215354875943Rat
1587384Parp8poly (ADP-ribose) polymerase family, member 824867940548848700Rat
1582992Cmya5cardiomyopathy associated 522427952024378253Rat
1583506Cenphcentromere protein H23189425331910182Rat
1566344RGD1566344similar to eukaryotic translation elongation factor 1 alpha 125353051053547324Rat
1584143Cdc20bcell division cycle 20B24468834944738056Rat
1584164Mcidasmulticiliate differentiation and DNA synthesis associated cell cycle protein24463658144643730Rat
1564365Ugt3a2UDP glycosyltransferase 3 family, polypeptide A225832705858350186Rat
1562902S100zS100 calcium binding protein Z22673878026753611Rat
1589594LOC502504similar to CG11883-PB, isoform B23624601036326648Rat
1564784Zfyve16zinc finger FYVE-type containing 1622371301823757576Rat
1592966LOC680363hypothetical protein LOC68036326045263060453393Rat
1587346Nntnicotinamide nucleotide transhydrogenase25141141351505125Rat
1587155LOC679528similar to peroxiredoxin 122660316726603947Rat
1592273LOC689489similar to DnaJ-like protein 224996595249971527Rat
1592324LOC689438similar to ribonucleic acid binding protein S124918239849183276Rat
1583619LOC679871hypothetical protein LOC67987125810144858102404Rat
1359527Tars1threonyl-tRNA synthetase 126036825160387733Rat
1585493LOC686105similar to solute carrier family 25, member 524210259442103565Rat
1590893Fam169afamily with sequence similarity 169, member A22838416228441361Rat
1586621GaptGrb2-binding adaptor protein, transmembrane24192753341932120Rat
1594499LOC365693similar to Nuclear protein SkiP (Ski-interacting protein) (SNW1 protein) (Nuclear receptor coactivator NCoA-62)25674032056741899Rat
1594500LOC365692similar to ribosomal protein S925658228856582972Rat
1594504LOC365673similar to microfibrillar-associated protein 124689250046893901Rat
1594505LOC365671similar to Protein CGI-11724540489145406036Rat
1594507LOC365655similar to ribosomal protein L22 like 123165479631655280Rat
1594508LOC365654similar to ATP synthase beta chain, mitochondrial precursor22913567729137702Rat
1594510LOC365650similar to metal response element binding transcription factor 222771107527712546Rat
1595422LOC681402similar to Nucleoside diphosphate kinase B (NDK B) (NDP kinase B) (P18)23347098033472009Rat
1594163LOC680268hypothetical protein LOC68026826066996860670245Rat
1596810LOC680078hypothetical protein LOC68007825831491258327069Rat
1585601Jmyjunction mediating and regulatory protein, p53 cofactor22466210424730955Rat
1590323LOC684444similar to HIStone family member (his-41)23038709430387613Rat
1594378LOC499538similar to non-POU domain containing, octamer-binding25738143957382974Rat
1594380Ndufs4NADH:ubiquinone oxidoreductase subunit S424595132746061829Rat
1594381LOC499522similar to 60S ribosomal protein L17 (L23) (Amino acid starvation-induced protein) (ASI)23692858836929161Rat
1594382LOC499517hypothetical LOC49951723098056430981584Rat
1594383Ankrd34bankyrin repeat domain 34B22365108323668041Rat
1594512LOC365643hypothetical LOC36564322381914923820836Rat
1595064Rnf180ring finger protein 18023633028536511168Rat
1597407Arl15ADP-ribosylation factor like GTPase 1524543822145822562Rat
1596440LOC685256similar to small nuclear ribonucleoparticle-associated protein22541765525418541Rat
2318781LOC100362101hypothetical LOC10036210124331935943322764Rat
2319559Rps15al4ribosomal protein S15A-like 425443754454438039Rat
2318361Dhx29DExH-box helicase 2924456065344611450Rat
2322829LOC100363518hypothetical LOC10036351825290706352909893Rat
2320700LOC100361161bolA-like 1-like23172813531729259Rat
2322904Zfp366zinc finger protein 36623057855230640546Rat
2320812LOC100364548hypothetical LOC10036454823009310330100126Rat
2321734Iqgap2IQ motif containing GTPase activating protein 222689483627170270Rat
2323229LOC100363314hypothetical protein LOC10036331425175256851765798Rat
2322653LOC100360196SNRPN upstream reading frame22541723325417480Rat
2323318Tmem167atransmembrane protein 167A22119772821216746Rat
2323466LOC100359774hypothetical LOC10035977426393638763937165Rat
2323519LOC100359721hypothetical LOC10035972126359223363595295Rat
2323520Ankrd31ankyrin repeat domain 3122807918728241722Rat
2323540LOC100359700eukaryotic translation initiation factor 1-like24539105545392369Rat
2324334LOC100362624biliverdin reductase A-like24553851845540448Rat
4888547Mir449cmicroRNA 449c24466917944669277Rat
2325413Mir582microRNA 58224092857140928651Rat
2323951LOC100362827high-mobility group nucleosomal binding domain 2-like25761869057618983Rat
2325536Mir449amicroRNA 449a24467071444670804Rat
2324086LOC100362772ribosomal protein S12-like25761507957615691Rat
2324713LOC100363177ferritin light chain 1-like26154356361544581Rat
2324600Smim15small integral membrane protein 1523952825639533416Rat
2325067Ankdd1bankyrin repeat and death domain containing 1B22775030127814291Rat
6488109LOC100912266uncharacterized LOC10091226622655406226563136Rat
6492359LOC100911520killer cell lectin-like receptor 5-like26421267264217862Rat
6495770LOC100911004heterogeneous nuclear ribonucleoprotein A1-like25729338457298637Rat
6504200LOC100909396uncharacterized LOC10090939626182809661830209Rat
7497054LOC102546726uncharacterized LOC10254672623355267833777029Rat
7497849LOC102548571uncharacterized LOC10254857125245354252486117Rat
7387335Ak6adenylate kinase 623179431631806375Rat
7505570LOC102551027uncharacterized LOC10255102722895496928999400Rat
7534134LOC102550255uncharacterized LOC10255025525516220155180537Rat
7512922LOC102556362uncharacterized LOC10255636225159536651601133Rat
7503607LOC10254829539S ribosomal protein L40, mitochondrial-like25946985759471850Rat
7517146LOC102546512uncharacterized LOC10254651223852728838537176Rat
7503935LOC10255077060S ribosomal protein L21-like25602493656025455Rat
7613080LOC102551263uncharacterized LOC10255126322909986529102988Rat
7613395LOC102555263uncharacterized LOC10255526323210901732216220Rat
7635624LOC102553770uncharacterized LOC10255377023106828531106257Rat
7637192LOC102551224heterogeneous nuclear ribonucleoprotein R-like24433760744340578Rat
7637193LOC10255257060S ribosomal protein L29-like24747080547471791Rat
7638416LOC102550768uncharacterized LOC10255076822879516728849077Rat
7654966LOC102553545uncharacterized LOC10255354523091063030933322Rat
7627562LOC102557393uncharacterized LOC10255739323174211431746654Rat
7643568LOC102547847uncharacterized LOC10254784725206884452075436Rat
7570025LOC102548637uncharacterized LOC10254863725280511752812142Rat
7571143LOC102551152uncharacterized LOC10255115222907398029084474Rat
7572801LOC102548141uncharacterized LOC10254814122476423824771284Rat
7557368LOC102556643uncharacterized LOC10255664325192915351940031Rat
7606174LOC102554307uncharacterized LOC10255430724364744143693619Rat
7567660LOC102547360uncharacterized LOC10254736025163178951640783Rat
7567902LOC102549347uncharacterized LOC10254934723950006339528170Rat
41054385LOC120101168U6 spliceosomal RNA26108224061082346Rat
7691404LOC102557105MLV-related proviral Env polyprotein-like24903190549036174Rat
7736543LOC102554057uncharacterized LOC10255405724349634343504404Rat
7751753LOC102546727uncharacterized LOC10254672723897359938994374Rat
7672686LOC102548891AKT-interacting protein-like23505758135059009Rat
7695496LOC102556361uncharacterized LOC10255636123761814037642341Rat
7676687LOC102546725uncharacterized LOC10254672523004768530053470Rat
7683682LOC102553935uncharacterized LOC10255393524342026843436706Rat
7724377LOC102554146septin-7-like25393384753941923Rat
7716052LOC102548698uncharacterized LOC10254869822655721926579051Rat
7668930LOC102556051uncharacterized LOC10255605123253577832855354Rat
7700687LOC102548142uncharacterized LOC10254814225217956352183483Rat
7679991LOC102554085chromobox protein homolog 3-like22818840428189044Rat
9137253LOC103691419uncharacterized LOC10369141922281453422818085Rat
9137783LOC103691475uncharacterized LOC10369147525438126754427711Rat
9179183LOC10369508940S ribosomal protein S13 pseudogene22923873429239646Rat
9150057LOC103691449uncharacterized LOC10369144923913897439167216Rat
9151583LOC103691446uncharacterized LOC10369144623719043137463186Rat
9191663LOC103691443uncharacterized LOC10369144323344482133447613Rat
9193186LOC103691468uncharacterized LOC10369146825196693351972303Rat
9200405LOC103691481uncharacterized LOC10369148125770176757704913Rat
9201190LOC103691453activated RNA polymerase II transcriptional coactivator p15 pseudogene24329894943300263Rat
9208714LOC103691456uncharacterized LOC10369145624389251943954354Rat
9307820LOC103691422uncharacterized LOC10369142222446878724481554Rat
9353912LOC103691494annexin-2 receptor-like25186121051861735Rat
9314470LOC10369142360S ribosomal protein L36 pseudogene22488384524884266Rat
9243561LOC103691473V-type proton ATPase subunit e 1 pseudogene25285185152852085Rat
9387191LOC103691483uncharacterized LOC10369148325973429159747359Rat
9362373LOC103695100uncharacterized LOC10369510026207365762085399Rat
9428698LOC103691472uncharacterized LOC10369147225251723252536035Rat
9469491LOC103691462serine/arginine-rich splicing factor 3 pseudogene24412959044130630Rat
9436047LOC103691451uncharacterized LOC10369145124272675242733899Rat
9476424LOC103691460putative 60S ribosomal protein L39-like 524747242447472576Rat
9411836LOC103691459uncharacterized LOC10369145924630205646347633Rat
9453411LOC103691452uncharacterized LOC10369145224283068542950401Rat
11449327LOC108349941uncharacterized LOC10834994123877523038811284Rat
11474944LOC108349945uncharacterized LOC10834994524526939345274138Rat
11474953LOC10835016760S ribosomal protein L17 pseudogene24753795647538570Rat
11458063LOC108350222uncharacterized LOC10835022222409945324103141Rat
11356949LOC10835015540S ribosomal protein S6 pseudogene25664481656655429Rat
11451820LOC108349943uncharacterized LOC10834994324158493541590024Rat
11371833LOC10834994960S ribosomal protein L15 pseudogene25151420551515270Rat
11452971LOC108349942uncharacterized LOC10834994223903661239069876Rat
11453461LOC108350230glyceraldehyde-3-phosphate dehydrogenase pseudogene26273716662738204Rat
11413279LOC108349939uncharacterized LOC10834993923861681938657106Rat
11419093LOC108350211uncharacterized LOC10835021123984997239855243Rat
11423879LOC108350223uncharacterized LOC10835022322611811926123605Rat
11374184LOC108349924NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 pseudogene22838740428399084Rat
11374962LOC108349922uncharacterized LOC10834992222590716025922806Rat
11375591LOC10835015340S ribosomal protein S6 pseudogene22114137121151233Rat
11387679LOC108349948uncharacterized LOC10834994824793105447941984Rat
11388086LOC10834995960S ribosomal protein L23-like25753907957542026Rat
11378089LOC108350169glyceraldehyde-3-phosphate dehydrogenase-like25309889553100054Rat
11378090LOC10835022960S ribosomal protein L17 pseudogene25984172659842316Rat
11388888LOC108349921uncharacterized LOC10834992122418322224209061Rat
11390954LOC108350224uncharacterized LOC10835022423313033033134546Rat
11381588LOC108349935uncharacterized LOC10834993523384297833850878Rat
11382166LOC108349962uncharacterized LOC10834996225783544257840143Rat
11382661LOC108349957uncharacterized LOC10834995725631680056349595Rat
11503988LOC108349927uncharacterized LOC10834992723002970630033330Rat
11511747LOC108350170glyceraldehyde-3-phosphate dehydrogenase pseudogene26084791860848940Rat
11487276LOC108350210uncharacterized LOC10835021024102007441032958Rat
11493630LOC10835017160S ribosomal protein L7a pseudogene26242432862430752Rat
11494182LOC10834993260S ribosomal protein L21 pseudogene23252930632531079Rat
41111255LOC120100737E3 SUMO-protein ligase KIAA1586-like25853208058540473Rat
41167126LOC120100700uncharacterized LOC12010070023939181139400380Rat
41235092LOC120100733uncharacterized LOC12010073325562890155632966Rat
41276753LOC120100740uncharacterized LOC12010074025960122159605292Rat
41381356LOC120093165uncharacterized LOC12009316525202302952027944Rat
41087919LOC120101241small nucleolar RNA SNORA2422509833125098459Rat
41113370LOC120101138U6 spliceosomal RNA23552861635528722Rat
41168070LOC120101349small nucleolar RNA SNORA1724997342749973549Rat
41168552NEWGENE_6576114transfer RNA threonine (anticodon AGU)24599777145997843Rat
41204573LOC120100702uncharacterized LOC12010070223949465539499673Rat
41284150LOC120101361small nucleolar RNA SNORA4022927320929273341Rat
41324318LOC120100741uncharacterized LOC12010074126001648260032748Rat
41141093LOC120100722uncharacterized LOC12010072225187453551883271Rat
41170998LOC120100680uncharacterized LOC12010068022978892429842718Rat
41251155LOC12010063960S ribosomal protein L7a-like23201909732019924Rat
41279240LOC120100703uncharacterized LOC12010070324305524743055771Rat
41325769LOC120101262small nucleolar RNA SNORA4823344337933443518Rat
41358011LOC120100987heterogeneous nuclear ribonucleoprotein A1-like25016131450162965Rat
41172051LOC120100725uncharacterized LOC12010072525197693651989635Rat
41172133LOC120101204U6 spliceosomal RNA22984966929849772Rat
41207236LOC120100736uncharacterized LOC12010073625810997758118986Rat
41207854LOC120101081uncharacterized LOC12010108124106008041067591Rat
41253562LOC120100713uncharacterized LOC12010071324538796445393370Rat
41253697LOC120100554uncharacterized LOC12010055422990222129907787Rat
41117892LOC120101248small nucleolar RNA SNORA4424661684846616952Rat
41328657LOC120101363small nucleolar RNA SNORD7225421716054217239Rat
41210646LOC120100677uncharacterized LOC12010067722873301528741444Rat
41122070LOC120101373small nucleolar RNA SNORA4722659426026594397Rat
41151137LOC120100552uncharacterized LOC12010055222717960227186615Rat
41178470LOC120100559uncharacterized LOC12010055925877866258796834Rat
41190503LOC120100693uncharacterized LOC12010069323367858233734740Rat
41213139LOC120100718uncharacterized LOC12010071824648879546493298Rat
41213451LOC120101199U6 spliceosomal RNA25175073951750849Rat
41394010LOC120093056ribosomal protein L3725421535254217429Rat
41191856LOC120101085uncharacterized LOC12010108526102048861021424Rat
41213703LOC12010055760S ribosomal protein L29-like23971531539716074Rat
41213708LOC120101118U2 spliceosomal RNA25692982556930018Rat
41265315LOC120100699uncharacterized LOC12010069923892561638943051Rat
41265375LOC120101296small nucleolar RNA SNORA1725407619354076322Rat
41266376LOC120100553uncharacterized LOC12010055322851713628519470Rat
41266421LOC120100704uncharacterized LOC12010070424338422243413501Rat
41343784LOC120101265small nucleolar RNA SNORA4825127413651274279Rat
41368707LOC120101082uncharacterized LOC12010108224106763841091014Rat
41124508LOC120100991annexin-2 receptor-like25205838852059000Rat
41124781LOC120101383U1 spliceosomal RNA22717466527174822Rat
41156848LOC120101369U6atac minor spliceosomal RNA25282301252823132Rat
41181423LOC120100685uncharacterized LOC12010068523110902531110232Rat
41215863LOC12010067440S ribosomal protein S26-like22809326228094806Rat
41268252NEWGENE_40940579transfer RNA leucine (anticodon AAG)22289107822891152Rat
41288964LOC120100698uncharacterized LOC12010069823886524538876526Rat
41345329LOC120100729small nuclear ribonucleoprotein G-like25429780354301899Rat
41396312LOC120100697uncharacterized LOC12010069723866775238693190Rat
41397082LOC120100738uncharacterized LOC12010073825862629358669887Rat
41157206LOC120100679uncharacterized LOC12010067922966705629674448Rat
41182925LOC120100730uncharacterized LOC12010073025433683354341457Rat
41269108LOC120100988annexin-2 receptor-like25191837451918968Rat
41346751LOC120101137U6 spliceosomal RNA22641538926415495Rat
41347556LOC120101080uncharacterized protein C11orf98 homolog23561335735613723Rat
41371773LOC120100686uncharacterized LOC12010068623111348831132788Rat
41103209LOC120100723annexin-2 receptor-like25200046852001148Rat
41127911LOC120100739non-POU domain-containing octamer-binding protein-like25875832858760040Rat
41160333LOC120100727uncharacterized LOC12010072725215394452162355Rat
41183723LOC120100690uncharacterized LOC12010069023189724131902191Rat
41184907LOC120101260small nucleolar RNA SNORA4825946698059467107Rat
41184943LOC120101307small nucleolar RNA SNORA1722297417022974295Rat
41185079LOC120101129U4 spliceosomal RNA24814008348140209Rat
41292358LOC120100719uncharacterized LOC12010071925159452351596329Rat
41348725LOC120101157U6 spliceosomal RNA23858377138583877Rat
41399437LOC120100710uncharacterized LOC12010071024506283845068931Rat
41072327LOC120101185U6 spliceosomal RNA24682793846828043Rat
41196986LOC120101348small nucleolar RNA SNORA1726516063165160712Rat
41230016LOC120100683uncharacterized LOC12010068323052273030537147Rat
41350418Shld3shieldin complex subunit 323529495635301865Rat
41374960LOC120100726uncharacterized LOC12010072625210296052107722Rat
41080950LOC120100666uncharacterized LOC12010066622342734623431346Rat
41131202LOC120100671uncharacterized LOC12010067122709867227103241Rat
41272581Lrrc70leucine rich repeat containing 7023821350838231099Rat
41401973LOC120100716uncharacterized LOC12010071624574321645773022Rat
41401989LOC120100672uncharacterized LOC12010067222709767727102253Rat
41402336LOC120100724uncharacterized LOC12010072425194594851952730Rat
41081966NEWGENE_40926764transfer RNA proline (anticodon AGG)24319849743198577Rat
41083090LOC120101283small nucleolar RNA SNORA1722969142429691555Rat
41164131LOC120100705uncharacterized LOC12010070524343872443442856Rat
41231663LOC120100995dipeptidyl peptidase 3-like26429759364432049Rat
41232314LOC12010099660S ribosomal protein L13-like26459573764596270Rat
41232441LOC120101238small nucleolar RNA SNORA1523402219734022326Rat
41232818LOC120100714uncharacterized LOC12010071424532182745369348Rat
41274238LOC120093149uncharacterized LOC12009314925203387852045558Rat
41403936LOC120100676uncharacterized LOC12010067622852018928542905Rat
41404161LOC120100992annexin-2 receptor-like25216521252165896Rat
41083925LOC120101290small nucleolar RNA SNORA1725377859953778725Rat
41109932LOC120100706uncharacterized LOC12010070624404788844057753Rat
41132845LOC120101181U6 spliceosomal RNA24403425044034357Rat
41165958LOC120101347small nucleolar RNA SNORA1723106447131064584Rat
40971037LOC120100688uncharacterized LOC12010068823171368231723623Rat
41010767LOC120100712uncharacterized LOC12010071224516406845188903Rat
40973599LOC12010098660S ribosomal protein L32-like24509889445099915Rat
41015821LOC120101076uncharacterized LOC12010107623391285733914443Rat
41341754LOC120100665uncharacterized LOC12010066522257644822585015Rat
40954385LOC120101342small nucleolar RNA SNORA1723644024536440364Rat
40980049LOC120100993high mobility group protein B1-like25535979355406351Rat
40929069LOC120101190U6 spliceosomal RNA22822452328224621Rat
40930512LOC120100715uncharacterized LOC12010071524533384945344756Rat
40930809LOC120100708uncharacterized LOC12010070824500810145013288Rat
40932300LOC120101123small nucleolar RNA U324981712849817210Rat
40982580LOC120101075uncharacterized LOC12010107523389787433938550Rat
40934274LOC120101078uncharacterized LOC12010107823409371134095907Rat
40934801LOC120100627protein dpy-30 homolog25952263859526672Rat
40986804LOC120101201U6 spliceosomal RNA22740036427400468Rat
41007476LOC120100555caspase-6-like23351689533520476Rat
41007563LOC120101130U4 spliceosomal RNA23171010731710236Rat
40962450LOC120101086uncharacterized LOC12010108626132407061330556Rat
40941042LOC120100734uncharacterized LOC12010073425722934357230048Rat
40966847LOC120100678uncharacterized LOC12010067822884711828850605Rat
40967037LOC120100689protein KTI12 homolog23185263531853927Rat
40991465LOC120100717uncharacterized LOC12010071724612810946130571Rat
40941687LOC120100669uncharacterized LOC12010066922691733826929267Rat
40942807LOC120101187U6 spliceosomal RNA24799928247999387Rat
40993190NEWGENE_40933816transfer RNA valine (anticodon AAC)24060367340603753Rat
40994045LOC12010073560S ribosomal protein L9-like25739033357399288Rat
40995943LOC120100742uncharacterized LOC12010074226558793765606771Rat
40996532LOC120100670uncharacterized LOC12010067022698515927001342Rat
41046346LOC120100687uncharacterized LOC12010068723148769831489974Rat
41047976LOC120100990annexin-2 receptor-like25205628752056881Rat
41074866LOC120100728coenzyme Q-binding protein COQ10 homolog B, mitochondrial-like25241448352418437Rat
41242421LOC120100989annexin-2 receptor-like25200256852003181Rat
41024273LOC120101084uncharacterized LOC12010108424131450641320081Rat
41024443LOC120101173U6 spliceosomal RNA26280651762806619Rat
41048152LOC120100731uncharacterized LOC12010073125453591354549230Rat
41075573LOC120100551uncharacterized LOC12010055122306050123065411Rat
41076301LOC120100663uncharacterized LOC12010066322205753722070249Rat
41244732LOC120101365small nucleolar RNA SNORD7822668496026685025Rat
41026454LOC120100681uncharacterized LOC12010068123002762630029202Rat
41077530LOC120101211small nucleolar RNA SNORD3625147495151475023Rat
41078389LOC120101271small nucleolar RNA SNORA4822509230325092451Rat
41078971LOC120100692uncharacterized LOC12010069223343819133470167Rat
41247549LOC12009309960S ribosomal protein L36-like23175516131755493Rat
41319327LOC120100732uncharacterized LOC12010073225557598655580855Rat
41029337LOC12010069540S ribosomal protein S29-like23574579835764518Rat
41030574LOC120100694uncharacterized LOC12010069423509379335099838Rat
41053152LOC120100556uncharacterized LOC12010055623460940034615966Rat
41332544LOC120100558uncharacterized LOC12010055825292745152929546Rat
41144197LOC120101125U4 spliceosomal RNA25642213356422274Rat
41338505LOC120100668succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like22654966026551984Rat
41152305LOC120100667uncharacterized LOC12010066722511381725136139Rat
41152499LOC120100720uncharacterized LOC12010072025171595651722569Rat
41056464LOC120101077uncharacterized LOC12010107723447471034477122Rat
41056682LOC120100625peptidyl-prolyl cis-trans isomerase FKBP3-like25642709656427708Rat
41258804LOC120101170U6 spliceosomal RNA23347197733472081Rat
41267733LOC120101372small nucleolar RNA U10922120778021207914Rat
41224681LOC120100664uncharacterized LOC12010066422223421222241323Rat
41337111LOC120100721NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4-like25176779751768492Rat
41035860LOC120100682translation initiation factor IF-223029947430302657Rat
41036237LOC120100985egl nine homolog 1-like23974837339749980Rat
41235450LOC120101111U2 spliceosomal RNA25079720950797380Rat
41064988LOC120100684uncharacterized LOC12010068423103987531070957Rat
41066036LOC120101289small nucleolar RNA SNORA1726034044160340572Rat
41041387LOC120100626mitochondrial cardiolipin hydrolase-like25702950057031550Rat
41305934LOC120100709uncharacterized LOC12010070924502713745050955Rat
41019158LOC120100701uncharacterized LOC12010070123943749039446872Rat
41068271LOC120100707uncharacterized LOC12010070724441967844426375Rat
41307324LOC120100675uncharacterized LOC12010067522834563728381004Rat
41308381LOC120100711prefoldin subunit 2-like24512485645125320Rat
41308577LOC120101083uncharacterized LOC12010108324027851940287658Rat
41240399LOC120101337small nucleolar RNA SNORA1725528960555289731Rat
41241035LOC120100994UDP-glucuronosyltransferase 3A1-like25838571458389680Rat
41022741LOC120100691uncharacterized LOC12010069123261736632625636Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10602D2Wox1318224613067246130826Ratregion
10924D2Mit318424328333143283515Ratregion
10925D2Wox1213224328330043283432Ratregion
10966D2Uwm3420022720502327205223Ratregion
11155D2Wox1418225932445459324636Ratregion
11156D2Mit2431025932437759324691Ratregion
33824D2Mit418826158212361582311Ratregion
34278D2Mgh1412024315456643154682Ratregion
34334D2Mgh2115025604303156043181Ratregion
34397D2Mgh213324006794440068089Ratregion
34425D2Mgh113423513484135134970Ratregion
34487D2Mgh330426251660962516896Ratregion
34514D2Mit3116523669541436695579Ratregion
36071D2Rat1517024713789847138066Ratregion
36089D2Rat416822146301221463190Ratregion
36145D2Rat7317022699957126999741Ratregion
36171D2Rat715022828423028284380Ratregion
36356D2Mit3318125314797553148156Ratregion
37520D2Rat11612023409103934091161Ratregion
35250D2Rat1313623808169038081826Ratregion
35272D2Rat1914025760561257605741Ratregion
35292D2Rat1817624112578941125954Ratregion
35427D2Rat812523051368330513808Ratregion
36850D2Rat2016025994328659943463Ratregion
36896D2Rat913023374476633744889Ratregion
36902D2Rat27017325382274753822920Ratregion
37018D2Rat1414224280460742804738Ratregion
37880D2Rat9422023152340931523629Ratregion
36428D2Rat1018623602318436023379Ratregion
36470D2Rat1617024366500843665178Ratregion
36532D2Rat1112723493800734938128Ratregion
36546D2Rat515022555172725551874Ratregion
36659D2Rat1713324826852848268661Ratregion
35699D2Rat614222796038727960546Ratregion
35941D2Rat1215423937437639374529Ratregion
39668D2Rat25424024390765543907909Ratregion
39728D2Rat19220622794025927940466Ratregion
39834D2Rat25218922490385324904033Ratregion
39874D2Rat19814824316236643162530Ratregion
38064D2Rat15322024278647942786683Ratregion
40446D2Rat29815524440524444405397Ratregion
40470D2Rat29917026353190063532066Ratregion
40672D2Rat20220025172913951729300Ratregion
38414D2Rat9012123173567231735799Ratregion
38476D2Rat14211124259119142591300Ratregion
38576D2Rat18224322541342325413652Ratregion
38770D2Rat18421924034027540340327Ratregion
38770D2Rat18421924034010640340593Ratregion
38770D2Rat18421924034010640340327Ratregion
40242D2Rat19417522997159329971768Ratregion
38950D2Rat17323724900313349003364Ratregion
38976D2Rat12421522691794826918153Ratregion
38976D2Rat12421522691781726918153Ratregion
39046D2Rat17522325943983459440061Ratregion
39170D2Rat17418225974481759745001Ratregion
39280D2Rat15410323091721630917319Ratregion
39460D2Rat20012624877318548773307Ratregion
39558D2Rat25316422655981726560006Ratregion
42104D2Arb124023852858938528872Ratregion
42117D2Arb4223026499184564992091Ratregion
42119D2Arb633525932430759324662Ratregion
42121D2Arb715025666087956661032Ratregion
41158D2Rat19724824006783540068095Ratregion
41334D2Rat20117324965706949657252Ratregion
41380D2Rat19515523420301234203179Ratregion
41402D2Rat19116022255537922555559Ratregion
42559D2Rat30821622164545221645651Ratregion
42560D2Rat26615324445797644458140Ratregion
42561D2Rat30921722459022824590426Ratregion
42564D2Rat31210823946200539462111Ratregion
42566D2Rat26714124388870143888824Ratregion
42567D2Rat26924724468070444680951Ratregion
42569D2Rat31624024997620649976429Ratregion
42570D2Rat31412524904333549043454Ratregion
42571D2Rat31524124876408448764308Ratregion
42572D2Rat31821025146482951465022Ratregion
42573D2Rat38523325752299657523239Ratregion
42575D2Rat31924225646919956469449Ratregion
42576D2Rat27114526030523460305371Ratregion
42577D2Rat32020726185874561858937Ratregion
42592D2Rat37722222258926722589503Ratregion
41016D2Rat19310123168580531685914Ratregion
41538D2Rat19913324124396341244106Ratregion
44552D9Wox2113625038964950389703Ratregion
44552D9Wox2113623740565337405710Ratregion
43463D2Got1422323750492237505150Ratregion
43464D2Got2119823808329338083501Ratregion
43465D2Got2018523808168538081874Ratregion
43466D2Got2328323751261037512902Ratregion
43467D2Got2414224157675441576896Ratregion
43468D2Got1918323785178437851955Ratregion
43469D2Got1717323988474239884915Ratregion
43470D2Got1819223936291339363105Ratregion
43471D2Got2223923927635739276596Ratregion
43472D2Got1613723903305739033194Ratregion
43473D2Got1511223617934336179445Ratregion
43474D2Got319622637731126377507Ratregion
43475D2Got18014922672849926728648Ratregion
43477D2Got417022668513726685307Ratregion
43479D2Got519422942916129429355Ratregion
43480D2Got722322986524029865463Ratregion
43481D2Wox3220623199099831991192Ratregion
43483D2Got19511423311776833117872Ratregion
43484D2Got617323223089632231087Ratregion
43485D2Got1014423284403732844191Ratregion
43486D2Got1210823476314034763246Ratregion
43488D2Got18217824312578443125962Ratregion
43488D2Got18217824312539943125962Ratregion
43489D2Got18118924294670342946889Ratregion
43490D2Got2715824445844044458595Ratregion
43491D2Got2819124550883445509022Ratregion
43492D2Wox516024600308546003241Ratregion
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5062674BF40377422024079801740798237Ratregion
5064250BE12088315423020811030208264Ratregion
5064404BI30210521324710772147107934Ratregion
5063650BE10790516422226320222263366Ratregion
5063760AW53510415224650819546508347Ratregion
5065168BE12106115522774424627744401Ratregion
5065404AA95756019524302352243023717Ratregion
5063892BE12017915222848341628483568Ratregion
5064080BE11400916023057115330571313Ratregion
5065668BF41272519523208019532080390Ratregion
5060882BE10465220122069615220696353Ratregion
5062548BI28898517224412396044124131Ratregion
5064242BE12084718025629097456291154Ratregion
5066038BF41318317824584264645842824Ratregion
5066068BE11670415622976927429769430Ratregion
5066072BE11673415823148915631489315Ratregion
5061080AW53213219025756959557569785Ratregion
5062914AA95555318623985838439858570Ratregion
5064506BI29686519823600124636001444Ratregion
5064518BI30223615022380558023805730Ratregion
5064594BE10816919023189471131894900Ratregion
5066124BF41348520722504182725042041Ratregion
5061326BE09962517424991038749910561Ratregion
5063034BF39827315824453845444538612Ratregion
5063122BE1137769223021162330211715Ratregion
5064756BE10845516222742344227423604Ratregion
5063212BI30143920224355485143555053Ratregion
5063262BF40404319424650812446508318Ratregion
5063264BE10749615024500645145006601Ratregion
5066452AU04834822423013468830136229Ratregion
5066460AU04834330025710293657103236Ratregion
5066584AU04827117726340346163403638Ratregion
5061648BF39698512922959500029595129Ratregion
5082007BF40904122122477094424771165Ratregion
5082099BF40950112922723159427231723Ratregion
5082247BE11901519022460304624603236Ratregion
5086080AI17931415022729849227298648Ratregion
5087080BQ19287518824135685041357038Ratregion
5087161AI22869819722844162528441823Ratregion
5087522PMC26870P224525080196650802211Ratregion
5082355BE11922415424805431348054467Ratregion
5086498BF40159421724133146541331682Ratregion
5087270AW53220916523058216030582325Ratregion
5087219AW52416516325725469957254862Ratregion
5087724Ccnb1-rs113823191412731914445Ratregion
5089785AU04936221024693101846931228Ratregion
5082663BE11995321224723108347231306Ratregion
5083197BF39096617924162397741624156Ratregion
5087995Map3k118524334880943348994Ratregion
5088060Prlr13525929089759291032Ratregion
5088263AU04846426125472421254724441Ratregion
5088263AU04846426125472418054724441Ratregion
5088285AU04847817223283995732840121Ratregion
5089503AU04919429625417444354174479Ratregion
5090625AU04986515622501881125018969Ratregion
5090691AU04990319624379939343799589Ratregion
5090727AU04992722825776599157766219Ratregion
5083677BF41805913224469432944694461Ratregion
5083783AI41290013022361336123613491Ratregion
5090415AU04973722723135033831350565Ratregion
5090643AU04987518623368898433689148Ratregion
5084194AA94506720623821623438216442Ratregion
5081673BE11797221525750218957502404Ratregion
5084652AI00817122023931989539320115Ratregion
5084812AI1793779123465265534652747Ratregion
5084962AI17180722324410337444103597Ratregion
5087781D13Die2516723157535631575523Ratregion
5087781D13Die2516723152654431526711Ratregion
5088011UniSTS:14392820523082682230827027Ratregion
5082203BI27412420323950042339500626Ratregion
5082429BE11937216822664491926645087Ratregion
5085487BE09695915123425007434250224Ratregion
5090745AU04993813523374020033740321Ratregion
5090809AU04997619225328865253288845Ratregion
5080994RH14190219825072747750727675Ratregion
5085286AI59920615022625424126254391Ratregion
5090323AU04968320325639939156399448Ratregion
5081152RH14199518822317416623174354Ratregion
5081316RH14209018822409950524099693Ratregion
5085659BF4165949725323769953237796Ratregion
5089979AU04947718124333968943339874Ratregion
5088947AU04886315624848086948481025Ratregion
5089181AU04900316125985060859850769Ratregion
5089261AU04905118125994321459943395Ratregion
5082633BE11988616822469530324695471Ratregion
5085960AI01400616022690554826905708Ratregion
5080724RH14174518623110601131106197Ratregion
5084592AI17040418424652067946520863Ratregion
5086357AA89158519022962325629623447Ratregion
5086357AA89158519022962325629623447Ratregion
5081124RH14197820523613405936134264Ratregion
5083147BF39087815623669596636696122Ratregion
5083171BF39091816123613634036136501Ratregion
5081643BE11782420025150608551506285Ratregion
5085258AW53275016724152864441528811Ratregion
5081747BE11801116622840440628404572Ratregion
5081999BG37253615122782516927825320Ratregion
5082001BG37254013822311880323118941Ratregion
5085792BM39231216523562236335622528Ratregion
5085840BF38818520323161236231612565Ratregion
5085842BM38290715223513501335135165Ratregion
5083881AI01065111623953379139533907Ratregion
5507507ECD0947662024331578443316404Ratregion
5503458GDNF_315047625691674556917221Ratregion
5503877CRTL124622068537720685623Ratregion
5507641Ddx4165924424700444248663Ratregion
5507666Ghr10025255176852552167Ratregion
5504304D10S1272E19724433872444338921Ratregion
5504857ha260088825878094258781904Ratregion
5505500D1S284289825242276052423658Ratregion
5504444PMC208779P159024424700444247594Ratregion
5504480PMC22098P152226093092960931451Ratregion
5505271Hmgcr022799872027999556Ratregion
5505654UniSTS:488481155824192783441929393Ratregion
5505901UniSTS:4960186322402114124021204Ratregion
5506029NM_1942839325941952659419619Ratregion
5506054UniSTS:49824518622358223623582422Ratregion
5506915G4794025523940154439401799Ratregion
5506467G1600124225080192750802169Ratregion
5506505D16S506135322507075225072105Ratregion
5506674REN2846526124331604643316307Ratregion
5506676REN2847124124331486143315102Ratregion
5506853G4646529623385878333859079Ratregion
5506670REN2800522824341375043413978Ratregion
5506672REN2835725424334939943349653Ratregion
5507223UniSTS:22534416525075831750758482Ratregion
5499575D4Ertd639e22223191410731914953Ratregion
5500133UniSTS:23708520122843871328438914Ratregion
5500135UniSTS:23709011523020778930207904Ratregion
5500139UniSTS:23711320824884081848841026Ratregion
5501229PMC156147P911022687191526872025Ratregion
5501988MARC_21845-21846:1025102921:176525748300657483771Ratregion
5500362GDB:33540916925776772057767887Ratregion
5500143UniSTS:23709610723177018231770289Ratregion
5500787stSG625181136024331485943316219Ratregion
5500789stSG625182108124331379843314879Ratregion
5500791stSG625183113824331268043313818Ratregion
5500318GDB:187013120023094744130948641Ratregion
5500903RP_L37_191225421647554217387Ratregion
5500957MARC_9941-9942:996688685:2024332104643321420Ratregion
5500615RH136262022844753228447820Ratregion
5503534HCN1__670186124989887449899735Ratregion
5501518G0732917123492697034927141Ratregion
5504922Isl16824807971648079784Ratregion
5501460D9S5527025797253357972803Ratregion
5501620REN122C19023816007038161096Ratregion
5501844MARC_15693-15694:1017691889:161923533042335331042Ratregion
5506183UniSTS:49873717523191404631914401Ratregion
5506210Mbd333822550152725501865Ratregion
5501974MARC_21512-21513:1032982746:3101325724384857244861Ratregion
5506678REN2860924024328803243288272Ratregion
5502760THBS4022399420923994558Ratregion
5502799MIER322524331238443312609Ratregion
5502873Foxd185122970400729704858Ratregion
5502293RH12430311224308942843089540Ratregion
Position Markers

Peak: (D2Rat198)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2243,162,366 - 43,162,530 (+)MAPPER
Rnor_6.0243,141,290 - 43,141,453NCBI
Rnor_5.0262,186,976 - 62,187,139UniSTS
RGSC_v3.4242,874,025 - 42,874,189RGD
RGSC_v3.4242,874,026 - 42,874,189UniSTS
RGSC_v3.1242,794,388 - 42,794,756RGD
Celera238,947,922 - 38,948,069UniSTS
SHRSP x BN Map218.4498RGD
SHRSP x BN Map218.4498UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631682Bp115Blood pressure QTL 1154.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2137410502Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61368Mcs1Mammary carcinoma susceptibility QTL 14.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777223319447Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1354592Rf50Renal function QTL 503.5urine output (VT:0003620)timed urine volume (CMO:0000260)25382274774786777Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1579916Bp270Blood pressure QTL 2700.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)25653191259324719Rat
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25666087974786777Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25760561276539510Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general measurement method: at 26 weeks of age femur was removed and frozen at -20oC, later it was scanned using a fan-beam Hologic QDR 4500A DXA machine with Hologic version 11.2:3 software 2300109
qtl_general software package: R/qtl software 2300109
qtl_general number of animals used: 405 males and 423 females from F2 progeny 2300109