Ccl28 (C-C motif chemokine ligand 28) - Rat Genome Database

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Gene: Ccl28 (C-C motif chemokine ligand 28) Rattus norvegicus
Analyze
Symbol: Ccl28
Name: C-C motif chemokine ligand 28
RGD ID: 619937
Description: Predicted to enable chemokine activity. Involved in response to nutrient. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Predicted to colocalize with secretory granule. Biomarker of hypertension and lymphopenia. Orthologous to human CCL28 (C-C motif chemokine ligand 28); PARTICIPATES IN chemokine mediated signaling pathway; cytokine mediated signaling pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C-C motif chemokine 28; CC chemokine CCL28; chemokine (C-C motif) ligand 28; Scya28
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8253,334,071 - 53,358,709 (+)NCBIGRCr8
mRatBN7.2251,601,354 - 51,625,999 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl251,601,331 - 51,625,997 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx258,720,298 - 58,745,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0256,779,014 - 56,803,736 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0251,713,145 - 51,737,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0252,379,341 - 52,403,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl252,379,341 - 52,404,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0270,743,251 - 70,767,888 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4251,688,294 - 51,712,931 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1251,616,526 - 51,641,162 (+)NCBI
Celera247,256,317 - 47,280,946 (+)NCBICelera
Cytogenetic Map2q15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Inflammation of the respiratory tract is associated with CCL28 and CCR10 expression in a murine model of allergic asthma. English K, etal., Immunol Lett. 2006 Mar 15;103(2):92-100. Epub 2005 Oct 21.
2. Serum mucosa-associated epithelial chemokine in atopic dermatitis: a specific marker for severity. Ezzat MH and Shaheen KY, Indian J Dermatol. 2009 Jul;54(3):229-36.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Induction of high-affinity IgE receptor on lung dendritic cells during viral infection leads to mucous cell metaplasia. Grayson MH, etal., J Exp Med. 2007 Oct 29;204(11):2759-69. Epub 2007 Oct 22.
5. Renal NF-kappaB activation and TNF-alpha upregulation correlate with salt-sensitive hypertension in Dahl salt-sensitive rats. Gu JW, etal., Am J Physiol Regul Integr Comp Physiol. 2006 Dec;291(6):R1817-24. Epub 2006 Jul 13.
6. Long-term high salt diet causes hypertension and alters renal cytokine gene expression profiles in Sprague-Dawley rats. Gu JW, etal., Beijing Da Xue Xue Bao. 2009 Oct 18;41(5):505-15.
7. Temporal production of CCL28 corresponds to eosinophil accumulation and airway hyperreactivity in allergic airway inflammation. John AE, etal., Am J Pathol. 2005 Feb;166(2):345-53.
8. Targeting of myelin protein zero in a spontaneous autoimmune polyneuropathy. Kim HJ, etal., J Immunol. 2008 Dec 15;181(12):8753-60.
9. Plasmids encoding the mucosal chemokines CCL27 and CCL28 are effective adjuvants in eliciting antigen-specific immunity in vivo. Kutzler MA, etal., Gene Ther. 2010 Jan;17(1):72-82. Epub 2009 Oct 22.
10. A common mucosal chemokine (mucosae-associated epithelial chemokine/CCL28) selectively attracts IgA plasmablasts. Lazarus NH, etal., J Immunol 2003 Apr 1;170(7):3799-805.
11. Depletion of CD8alpha+ lymphocytes attenuates CCL28 expression in villus epithelia in rats. Lee JS, etal., Immunol Lett. 2009 May 14;124(1):50-4. Epub 2009 Apr 22.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
15. GOA pipeline RGD automated data pipeline
16. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
17. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10781587   PMID:12538707   PMID:18308860   PMID:19199708  


Genomics

Comparative Map Data
Ccl28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8253,334,071 - 53,358,709 (+)NCBIGRCr8
mRatBN7.2251,601,354 - 51,625,999 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl251,601,331 - 51,625,997 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx258,720,298 - 58,745,016 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0256,779,014 - 56,803,736 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0251,713,145 - 51,737,860 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0252,379,341 - 52,403,979 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl252,379,341 - 52,404,246 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0270,743,251 - 70,767,888 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4251,688,294 - 51,712,931 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1251,616,526 - 51,641,162 (+)NCBI
Celera247,256,317 - 47,280,946 (+)NCBICelera
Cytogenetic Map2q15NCBI
CCL28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38543,356,975 - 43,412,391 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl543,376,645 - 43,412,391 (-)EnsemblGRCh38hg38GRCh38
GRCh37543,376,747 - 43,412,493 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36543,417,357 - 43,448,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 34543,412,504 - 43,448,229NCBI
Celera543,272,718 - 43,303,607 (-)NCBICelera
Cytogenetic Map5p12NCBI
HuRef543,332,397 - 43,363,621 (-)NCBIHuRef
CHM1_1543,382,924 - 43,413,832 (-)NCBICHM1_1
T2T-CHM13v2.0543,609,806 - 43,665,221 (-)NCBIT2T-CHM13v2.0
Ccl28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913120,085,355 - 120,115,895 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13120,085,355 - 120,115,895 (+)EnsemblGRCm39 Ensembl
GRCm3813119,623,819 - 119,654,359 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13119,623,819 - 119,654,359 (+)EnsemblGRCm38mm10GRCm38
Celera13124,002,981 - 124,040,196 (+)NCBICelera
Cytogenetic Map13D2.3NCBI
Ccl28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544618,902,636 - 18,925,561 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544618,902,465 - 18,925,178 (+)NCBIChiLan1.0ChiLan1.0
CCL28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2466,938,933 - 66,952,819 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1565,092,559 - 65,106,433 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0566,977,643 - 66,998,420 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1572,012,579 - 72,046,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl572,012,579 - 72,046,031 (+)Ensemblpanpan1.1panPan2
CCL28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1466,567,139 - 66,597,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl466,566,989 - 66,597,459 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha466,327,898 - 66,358,117 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0467,059,634 - 67,089,860 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl467,058,916 - 67,090,314 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1466,817,571 - 66,848,315 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0466,947,140 - 66,977,927 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0467,484,045 - 67,514,790 (+)NCBIUU_Cfam_GSD_1.0
Ccl28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213209,873,838 - 209,888,593 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648018,810,406 - 18,824,894 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648018,819,012 - 18,824,981 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCL28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1627,985,167 - 28,010,858 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11627,990,024 - 28,010,859 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21629,377,476 - 29,399,143 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCL28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1442,163,094 - 42,194,517 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607132,639,127 - 32,653,708 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccl28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475911,759,048 - 11,784,493 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475911,759,304 - 11,781,284 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ccl28
159 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:239
Count of miRNA genes:175
Interacting mature miRNAs:194
Transcripts:ENSRNOT00000023618
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
12879863Bp402Blood pressure QTL 4020.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24112578956532139Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)24280460760653831Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2
Low 1 10 25 9 18 9 8 9 9 29 11 10 8
Below cutoff 7 7 1 7 1 10 2 14 1

Sequence


RefSeq Acc Id: ENSRNOT00000082614   ⟹   ENSRNOP00000068769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl252,397,175 - 52,404,246 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084486   ⟹   ENSRNOP00000074357
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl251,601,331 - 51,625,997 (+)Ensembl
Rnor_6.0 Ensembl252,379,341 - 52,403,977 (+)Ensembl
RefSeq Acc Id: NM_053700   ⟹   NP_446152
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8253,334,071 - 53,358,709 (+)NCBI
mRatBN7.2251,601,354 - 51,625,999 (+)NCBI
Rnor_6.0252,379,341 - 52,403,979 (+)NCBI
Rnor_5.0270,743,251 - 70,767,888 (+)NCBI
RGSC_v3.4251,688,294 - 51,712,931 (+)RGD
Celera247,256,317 - 47,280,946 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_446152 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK52773 (Get FASTA)   NCBI Sequence Viewer  
  EDM10422 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074357.2
RefSeq Acc Id: NP_446152   ⟸   NM_053700
- Peptide Label: precursor
- UniProtKB: A6I5W4 (UniProtKB/TrEMBL),   Q91Y39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074357   ⟸   ENSRNOT00000084486
RefSeq Acc Id: ENSRNOP00000068769   ⟸   ENSRNOT00000082614
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V896-F1-model_v2 AlphaFold G3V896 1-135 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691157
Promoter ID:EPDNEW_R1682
Type:initiation region
Name:Ccl28_1
Description:C-C motif chemokine ligand 28
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0252,379,316 - 52,379,376EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:619937 AgrOrtholog
BioCyc Gene G2FUF-54282 BioCyc
Ensembl Genes ENSRNOG00000059640 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000084486.2 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_CC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report rno:114492 UniProtKB/TrEMBL
NCBI Gene 114492 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 27 FAMILY MEMBER UniProtKB/TrEMBL
  C-C MOTIF CHEMOKINE 28 UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PhenoGen Ccl28 PhenoGen
PROSITE SMALL_CYTOKINES_CC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000059640 RatGTEx
Superfamily-SCOP Chemokine_IL8 UniProtKB/TrEMBL
UniProt A6I5W4 ENTREZGENE, UniProtKB/TrEMBL
  G3V896_RAT UniProtKB/TrEMBL
  Q91Y39 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-08 Ccl28  C-C motif chemokine ligand 28  Ccl28  chemokine (C-C motif) ligand 28  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ccl28  chemokine (C-C motif) ligand 28    CC chemokine CCL28  Name updated 1299863 APPROVED
2004-09-10 Ccl28  CC chemokine CCL28  Scya28    Symbol and Name updated 1299863 APPROVED
2002-08-07 Scya28  CC chemokine CCL28      Symbol and Name status set to provisional 70820 PROVISIONAL